Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0017419

Physical Location & Seq

Genomic Coordinates Reverse (-)

22721282 .. 22724525

Gene Structure 3244 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001897

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGAAATTGAGTTTTGGTTTAGGGCTCCTCCTCATTTTCATCTTCACTGGTGGAAGGGATGGTTTCTCTCTAAGGAGAGGAAGGATTTTGAGAGGGGATTTGCATTGTATGGTGTTGATGGAGGATCAGAGGTGCTGGAGTACGCTAGAGAAAATTGGTGGCAGGTCGTTTGTGGTTGTGTTGATGTGGCCTGGTGTGAGTGACTTCATAGAAGACTGGATCAAAATTGGCCAAGCTGCCAAGAACAAGGTGAAGGTACTACATGAAGGTGCTTCCTTCCCTGAACTATGCACTCACTGTGAAAAGGAAGTGAAGCAGACGAACCTGAATTGTCGGTGTGCATGGTTAATGCAATTATTACAGAGATTATACAAATATGCAGTTGAGGCACAGAAAGCAGTTGAGTGGCTTGATGGAAGAGTTGTTGATGGTTGCGAAATAACTGCCCAGTTTGCAAAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010033 GO:0010037 GO:0010119 GO:0010319 GO:0015979 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055035 GO:0065007 GO:0071944 GO:0072347 GO:0098542 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

156

Amino Acids

17.73

Weight (kDa)

8.49

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017419)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0113531 RchiOBHm_Chr2g0171981 RchiOBHm_Chr2g0172081 RchiOBHm_Chr6g0290101
rosa_laevigata	RLG00000001897
rosa_roxburghii	Rroxscaffold_1G00002340
rosa_samantha	Rh2AG413300 Rh4CG190800 Rh6AG366900 Rh6BG077100 Rh6CG333400 Rh7AG247600 Rh7CG388400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	156
AclWI	GGATC	2 cut(s)	135, 230
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	461
AfaI	GTAC	2 cut(s)	145, 261
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
AlwI	GGATC	2 cut(s)	135, 230
AoxI	GGCC	2 cut(s)	191, 232
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	4 cut(s)	56, 115, 410, 425
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciT130I	CCWGG	1 cut(s)	195
BfaI	CTAG	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	156
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	195
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	195
BmrI	ACTGGG	1 cut(s)	445
BmuI	ACTGGG	1 cut(s)	445
BpiI	GAAGAC	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	160
Bse1I	ACTGG	3 cut(s)	55, 224, 451
BseBI	CCWGG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	67
BseNI	ACTGG	3 cut(s)	55, 224, 451
BseRI	GAGGAG	2 cut(s)	20, 23
BseXI	GCAGC	1 cut(s)	226
BshFI	GGCC	2 cut(s)	193, 234
BsnI	GGCC	2 cut(s)	193, 234
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	127, 222
BspANI	GGCC	2 cut(s)	193, 234
BspLI	GGNNCC	1 cut(s)	29
BspMI	ACCTGC	1 cut(s)	156
BspPI	GGATC	2 cut(s)	135, 230
BsrI	ACTGG	3 cut(s)	55, 224, 451
BssMI	GATC	2 cut(s)	127, 222
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	1 cut(s)	415
BstDEI	CTNAG	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	2 cut(s)	130, 225
BstMBI	GATC	2 cut(s)	127, 222
BstMWI	GCNNNNNNNGC	3 cut(s)	389, 398, 455
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
BstV1I	GCAGC	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	193, 234
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	48, 298
BveI	ACCTGC	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	144, 260
CviAII	CATG	2 cut(s)	266, 345
CviJI	RGCY	5 cut(s)	28, 193, 234, 239, 412
CviKI_1	RGCY	5 cut(s)	28, 193, 234, 239, 412
CviQI	GTAC	2 cut(s)	144, 260
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	2 cut(s)	129, 224
DpnII	GATC	2 cut(s)	127, 222
EaeI	YGGCCR	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	30
FaeI	CATG	2 cut(s)	269, 348
FaiI	YATR	7 cut(s)	113, 212, 267, 292, 346, 373, 381
FatI	CATG	2 cut(s)	265, 344
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	193, 234
Hin1II	CATG	2 cut(s)	269, 348
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	1 cut(s)	132
HpyAV	CCTTC	5 cut(s)	51, 78, 250, 263, 289
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4V	TGCA	6 cut(s)	106, 294, 344, 355, 383, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	389, 398, 455
HpyF3I	CTNAG	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	269, 348
Kzo9I	GATC	2 cut(s)	127, 222
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	9 cut(s)	36, 124, 151, 180, 205, 207, 297, 341, 464
Lsp1109I	GCAGC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	2 cut(s)	129, 224
MboI	GATC	2 cut(s)	127, 222
MboII	GAAGA	3 cut(s)	37, 227, 432
MhlI	GDGCHC	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	234
MluCI	AATT	6 cut(s)	8, 156, 228, 331, 356, 461
MluNI	TGGCCA	1 cut(s)	234
MnlI	CCTC	7 cut(s)	41, 44, 74, 89, 118, 126, 382
Mox20I	TGGCCA	1 cut(s)	234
MscI	TGGCCA	1 cut(s)	234
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	3 cut(s)	389, 398, 455
NdeII	GATC	2 cut(s)	127, 222
NlaIII	CATG	2 cut(s)	269, 348
NlaIV	GGNNCC	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	29
RsaI	GTAC	2 cut(s)	145, 261
RsaNI	GTAC	2 cut(s)	144, 260
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	2 cut(s)	127, 222
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	7 cut(s)	137, 170, 241, 255, 261, 274, 330
SmiMI	CAYNNNNRTG	1 cut(s)	270
Sse9I	AATT	6 cut(s)	8, 156, 228, 331, 356, 461
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	302
TasI	AATT	6 cut(s)	8, 156, 228, 331, 356, 461
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	2 cut(s)	55, 305
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	3 cut(s)	31, 199, 282
TspRI	CASTG	2 cut(s)	55, 305
XapI	RAATTY	1 cut(s)	461
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.