RchiOBHm_Chr2g0118261

UPF0235 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011998
Physical Location & Seq
Forward (+)
30598514 .. 30600700
2187 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
ATGGCTCCAGCGAAGAAGGGAAAGGCCAAGGCCAAACCTGCCGCCGCCGCCGAGTCGACTCAGTCCTCCGCTACCAACAATTTCCCGGCATGTATTCGCTCCGTACCTCCCTCCTCCGTCGCCATCACCATCCACGCCAAGCCTGGCTCCAAACTCGCCTCCATCACTGATTTCAGTGATGAGGCGTTGGGTGTGCAGATCGACGCCCCTGCAAAGGACGGCGAAGCTAACGCCGCCCTACTCGACTACATTAGTTCGGTTTTAGGTGTAAAAAGAAGGCAGGTTTCTATTGGATGTGGCTCTAAATCAAGAGACAAGGTTGTTATTGTAGAGGAGATGACACTACAAAGTGTTTTTGACATTCTGGAGAGAGCTTCAAAGTGCAGCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF167

Protein Analysis

130

Amino Acids

13.45

Weight (kDa)

9.07

Isoelectric Point (pI)

53.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF167 PF02594 40 - 111 9.5e-21 Uncharacterised ACR, YggU family COG1872
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 46, 271
AccI GTMKAC 1 cut(s) 56
AciI CCGC 5 cut(s) 42, 45, 48, 69, 234
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 1 cut(s) 378
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 2 cut(s) 227, 374
AluI AGCT 2 cut(s) 227, 374
Alw26I GTCTC 1 cut(s) 306
AoxI GGCC 2 cut(s) 24, 30
ApeKI GCWGC 1 cut(s) 384
AspLEI GCGC 1 cut(s) 389
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 118
BccI CCATC 3 cut(s) 131, 137, 170
BceAI ACGGC 1 cut(s) 235
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 1 cut(s) 144
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 306
BfuAI ACCTGC 2 cut(s) 46, 271
BisI GCNGC 5 cut(s) 42, 45, 48, 234, 385
BlsI GCNGC 5 cut(s) 43, 46, 49, 235, 386
Bme1390I CCNGG 2 cut(s) 86, 144
BmiI GGNNCC 2 cut(s) 6, 148
BmrFI CCNGG 2 cut(s) 86, 144
BpmI CTGGAG 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 129, 299
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 74
BseRI GAGGAG 2 cut(s) 103, 347
BsgI GTGCAG 1 cut(s) 215
BshFI GGCC 2 cut(s) 26, 32
BsiSI CCGG 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 306
BsnI GGCC 2 cut(s) 26, 32
Bsp143I GATC 1 cut(s) 198
BspACI CCGC 5 cut(s) 42, 45, 48, 69, 234
BspANI GGCC 2 cut(s) 26, 32
BspCNI CTCAG 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 6, 148
BspMI ACCTGC 2 cut(s) 46, 271
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 198
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 204
BstDEI CTNAG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 129, 299
BstHHI GCGC 1 cut(s) 389
BstKTI GATC 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 1 cut(s) 198
BstMWI GCNNNNNNNGC 3 cut(s) 38, 47, 233
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 2 cut(s) 84, 142
BsuRI GGCC 2 cut(s) 26, 32
BtsCI GGATG 2 cut(s) 129, 299
BtsIMutI CAGTG 2 cut(s) 165, 181
BveI ACCTGC 2 cut(s) 46, 271
CfoI GCGC 1 cut(s) 389
CseI GACGC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 104
CviAII CATG 1 cut(s) 90
CviJI RGCY 8 cut(s) 5, 26, 32, 142, 147, 227, 300, 374
CviKI_1 RGCY 8 cut(s) 5, 26, 32, 142, 147, 227, 300, 374
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 1 cut(s) 60
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 1 cut(s) 93
FaiI YATR 2 cut(s) 91, 391
FatI CATG 1 cut(s) 89
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 5 cut(s) 42, 45, 48, 234, 385
FokI GGATG 2 cut(s) 116, 306
Fsp4HI GCNGC 5 cut(s) 42, 45, 48, 234, 385
GlaI GCGC 1 cut(s) 388
GluI GCNGC 5 cut(s) 42, 45, 48, 234, 385
GsuI CTGGAG 1 cut(s) 386
HaeIII GGCC 2 cut(s) 26, 32
HapII CCGG 1 cut(s) 86
HgaI GACGC 1 cut(s) 212
HhaI GCGC 1 cut(s) 389
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 1 cut(s) 93
Hin6I GCGC 1 cut(s) 387
HinP1I GCGC 1 cut(s) 387
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 2 cut(s) 53, 58
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 57
Hpy188III TCNNGA 2 cut(s) 309, 365
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 2 cut(s) 122, 206
HpyAV CCTTC 2 cut(s) 10, 270
HpyCH4V TGCA 3 cut(s) 196, 212, 384
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 47, 233
HpyF3I CTNAG 1 cut(s) 60
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 1 cut(s) 93
HspAI GCGC 1 cut(s) 387
Kzo9I GATC 1 cut(s) 198
LmnI GCTCC 3 cut(s) 10, 104, 152
LpnPI CCDG 8 cut(s) 21, 51, 99, 129, 156, 222, 266, 350
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 1 cut(s) 25
MluCI AATT 1 cut(s) 79
MlyI GAGTC 2 cut(s) 52, 62
MnlI CCTC 7 cut(s) 76, 117, 121, 124, 169, 175, 325
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 2 cut(s) 86, 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 38, 47, 233
NciI CCSGG 1 cut(s) 86
NdeII GATC 1 cut(s) 198
NlaIII CATG 1 cut(s) 93
NlaIV GGNNCC 2 cut(s) 6, 148
NmeAIII GCCGAG 1 cut(s) 76
NspI RCATGY 1 cut(s) 93
PflFI GACNNNGTC 1 cut(s) 61
PkrI GCNGC 5 cut(s) 43, 46, 49, 235, 386
PleI GAGTC 2 cut(s) 52, 61
PpsI GAGTC 2 cut(s) 52, 61
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 6, 148
PsyI GACNNNGTC 1 cut(s) 61
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SalI GTCGAC 1 cut(s) 55
SatI GCNGC 5 cut(s) 42, 45, 48, 234, 385
Sau3AI GATC 1 cut(s) 198
SchI GAGTC 2 cut(s) 52, 62
ScrFI CCNGG 2 cut(s) 86, 144
SetI ASST 7 cut(s) 40, 109, 229, 268, 285, 321, 376
Sse9I AATT 1 cut(s) 79
SsiI CCGC 5 cut(s) 42, 45, 48, 69, 234
StyD4I CCNGG 2 cut(s) 84, 142
StyI CCWWGG 1 cut(s) 27
TaqI TCGA 3 cut(s) 56, 201, 243
TasI AATT 1 cut(s) 79
TauI GCSGC 4 cut(s) 44, 47, 50, 236
TscAI CASTG 2 cut(s) 172, 181
TseI GCWGC 1 cut(s) 384
TspGWI ACGGA 2 cut(s) 91, 106
TspRI CASTG 2 cut(s) 172, 181
Tth111I GACNNNGTC 1 cut(s) 61
XceI RCATGY 1 cut(s) 93
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.