Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006190

Physical Location & Seq

Genomic Coordinates Reverse (-)

35593760 .. 35600793

Gene Structure 7034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCTCCTCCTCCCATCCTTTCCTTGGCTCTGCCTTCCGAGACTGGTCGAGTTCTCAGTATCCAATCCCACACTGTTCAGGGATATGTTGGGAATAAATCAGCTGTGTTCCCCCTGCAATTATTAGGCTATGATGTGGATCCAATTAATTCTGTCCAGTTCTCAAACCACACAGGCAAGCTGCTTCTATTTCATTCAAACAGATACCCAACATTTAAGGGTCAAGTTTTAAATGGAGAACAGCTTTGGGCATTGATACAAGGCCTTGAATCAAATGATCTATTATACTACACTCATTTATTAACAGGTTATATTGGTTCAGTTTCTTTTCTGAGCACTGTATTGGAAGTTGTCAATAAACTTCGCTCTATAAACCCAAAACTTAGATATGTCTGTGATCCAGTGATGGGTGATGAAGGAAAGCTGTATGTCCCTCCAGAGCTGGTATCTGTTTATCGTGAAAAGGTTGTCCCTGTTGCTTCAATGTTGACTCCCAACCAGTTTGAAGCAGAATTGTTGACCAACTCCAGGATTGAGTCTGAAAGAGATGGCCGTGAAGCTTGTAACATTCTTCACGCTGCTGGACCATCAATGGTTGTGATAACAAGCATAAATATAGATGGTAATCTTCTTCTAATTGGTAGTCATCAAAAGGAACAAGGTCTGTCTCCAGAACAATTCAAGATTGTGATTCCTAAGATTCCTGCGTATTTCACGGGTACAGGAGATCTTACAACTGCGCTTCTACTTGGTTGGAGTAATAAATATCCTAACAACCTAGATAAGGCTGCGGAGCTTGCTGTATCAACCGTGCAGGCCCTTTTGCAGAGAACAGTAAATGATTATAAAACTGCTGGCCATGATCCCCAGTCAACCAGTTTAGAGATTCGATTAATACAAAGTCAAGATGACATTCGTCAACCTGAGATTAAATTCAGAGCTGAAAGATATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0008478 GO:0008614 GO:0008615 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0042364 GO:0042538 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043094 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 map00750 map01100

Pfam Domains

Protein Families

Phos_pyr_kin

Protein Analysis

318

Amino Acids

35.17

Weight (kDa)

5.99

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phos_pyr_kin	PF08543	102 - 276	1.5e-14	Phosphomethylpyrimidine kinase
PfkB	PF00294	154 - 218	6.4e-06	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37850 AT5G37850 AT5G37850 AT5G37850
fragaria_vesca	FvH4_1g24900 FvH4_1g24900 FvH4_1g24900 FvH4_1g24900
malus_domestica	MD12G1075700.v1.1
prunus_persica	Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1
pyrus_communis	pycom12g06500
rosa_chinensis	RchiOBHm_Chr2g0122561
rosa_laevigata	RLG00000018690
rosa_multiflora	Rmu_sc0003832.1_g000001 Rmu_sc0028505.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121470
rosa_rugosa	Rorug02G0239500 Rorug02G0239600
rosa_samantha	Rh2AG298200 Rh2BG307000 Rh2CG285100 Rh2DG321800
rosa_wichuraiana	Rw2G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	846
AciI	CCGC	1 cut(s)	791
AclWI	GGATC	4 cut(s)	134, 147, 392, 857
AcoI	YGGCCR	2 cut(s)	550, 856
AcsI	RAATTY	1 cut(s)	932
AfaI	GTAC	1 cut(s)	721
AfiI	CCNNNNNNNGG	4 cut(s)	25, 407, 528, 784
AgsI	TTSAA	5 cut(s)	198, 269, 483, 506, 682
AjnI	CCWGG	1 cut(s)	527
AluBI	AGCT	8 cut(s)	104, 181, 244, 424, 442, 560, 796, 941
AluI	AGCT	8 cut(s)	104, 181, 244, 424, 442, 560, 796, 941
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	2 cut(s)	35, 672
AlwI	GGATC	4 cut(s)	134, 147, 392, 857
AoxI	GGCC	4 cut(s)	262, 550, 816, 856
ApeKI	GCWGC	3 cut(s)	181, 578, 788
ApoI	RAATTY	1 cut(s)	932
AseI	ATTAAT	2 cut(s)	147, 893
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	2 cut(s)	584, 817
AsuHPI	GGTGA	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	584
BalI	TGGCCA	1 cut(s)	858
BamHI	GGATCC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	168, 565, 775
BccI	CCATC	5 cut(s)	23, 400, 542, 595, 614
BceAI	ACGGC	1 cut(s)	537
BciT130I	CCWGG	1 cut(s)	529
BciVI	GTATCC	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	35, 672
BfaI	CTAG	1 cut(s)	779
BfuI	GTATCC	1 cut(s)	71
BglII	AGATCT	1 cut(s)	727
BisI	GCNGC	3 cut(s)	182, 579, 789
BlsI	GCNGC	3 cut(s)	183, 580, 790
Bme1390I	CCNGG	1 cut(s)	529
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	2 cut(s)	584, 817
BmiI	GGNNCC	2 cut(s)	6, 141
BmrFI	CCNGG	1 cut(s)	529
BmrI	ACTGGG	1 cut(s)	862
BmuI	ACTGGG	1 cut(s)	862
BoxI	GACNNNNGTC	1 cut(s)	915
BpmI	CTGGAG	3 cut(s)	420, 511, 654
BsaBI	GATNNNNATC	2 cut(s)	138, 624
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 407, 528, 784
Bse1I	ACTGG	6 cut(s)	49, 157, 401, 499, 868, 876
Bse8I	GATNNNNATC	2 cut(s)	138, 624
BseBI	CCWGG	1 cut(s)	529
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	15
BseJI	GATNNNNATC	2 cut(s)	138, 624
BseLI	CCNNNNNNNGG	4 cut(s)	25, 407, 528, 784
BseMII	CTCAG	3 cut(s)	70, 323, 915
BseNI	ACTGG	6 cut(s)	49, 157, 401, 499, 868, 876
BseXI	GCAGC	3 cut(s)	168, 565, 775
BsgI	GTGCAG	1 cut(s)	833
BshFI	GGCC	4 cut(s)	264, 552, 818, 858
BsiHKAI	GWGCWC	1 cut(s)	338
BslFI	GGGAC	2 cut(s)	416, 455
BslI	CCNNNNNNNGG	4 cut(s)	25, 407, 528, 784
BsmAI	GTCTC	2 cut(s)	35, 672
BsmFI	GGGAC	2 cut(s)	416, 455
BsnI	GGCC	4 cut(s)	264, 552, 818, 858
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	5 cut(s)	139, 277, 397, 727, 862
BspACI	CCGC	1 cut(s)	791
BspANI	GGCC	4 cut(s)	264, 552, 818, 858
BspCNI	CTCAG	3 cut(s)	69, 324, 916
BspLI	GGNNCC	2 cut(s)	6, 141
BspPI	GGATC	4 cut(s)	134, 147, 392, 857
BsrI	ACTGG	6 cut(s)	49, 157, 401, 499, 868, 876
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	5 cut(s)	139, 277, 397, 727, 862
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	529
Bst4CI	ACNGT	4 cut(s)	76, 340, 811, 835
BstC8I	GCNNGC	4 cut(s)	179, 798, 816, 856
BstDEI	CTNAG	5 cut(s)	56, 332, 383, 696, 924
BstENI	CCTNNNNNAGG	1 cut(s)	782
BstF5I	GGATG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	5 cut(s)	142, 280, 400, 730, 865
BstMAI	GTCTC	2 cut(s)	35, 672
BstMBI	GATC	5 cut(s)	139, 277, 397, 727, 862
BstMWI	GCNNNNNNNGC	1 cut(s)	797
BstNI	CCWGG	1 cut(s)	529
BstPAI	GACNNNNGTC	1 cut(s)	915
BstSCI	CCNGG	1 cut(s)	527
BstV1I	GCAGC	3 cut(s)	168, 565, 775
BstX2I	RGATCY	2 cut(s)	139, 727
BstYI	RGATCY	2 cut(s)	139, 727
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	4 cut(s)	264, 552, 818, 858
BtsCI	GGATG	1 cut(s)	15
BtsIMutI	CAGTG	3 cut(s)	72, 336, 408
Cac8I	GCNNGC	4 cut(s)	179, 798, 816, 856
CfoI	GCGC	1 cut(s)	742
Cfr13I	GGNCC	2 cut(s)	584, 817
Csp6I	GTAC	1 cut(s)	720
CviAII	CATG	1 cut(s)	860
CviQI	GTAC	1 cut(s)	720
DdeI	CTNAG	5 cut(s)	56, 332, 383, 696, 924
DpnI	GATC	5 cut(s)	141, 279, 399, 729, 864
DpnII	GATC	5 cut(s)	139, 277, 397, 727, 862
DraI	TTTAAA	1 cut(s)	231
EaeI	YGGCCR	2 cut(s)	550, 856
Eco130I	CCWWGG	1 cut(s)	24
Eco147I	AGGCCT	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	584
EcoNI	CCTNNNNNAGG	1 cut(s)	782
EcoO109I	RGGNCCY	1 cut(s)	817
EcoRII	CCWGG	1 cut(s)	527
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	1 cut(s)	863
FaqI	GGGAC	2 cut(s)	416, 455
FatI	CATG	1 cut(s)	859
Fnu4HI	GCNGC	3 cut(s)	182, 579, 789
FokI	GGATG	1 cut(s)	2
Fsp4HI	GCNGC	3 cut(s)	182, 579, 789
FspBI	CTAG	1 cut(s)	779
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	3 cut(s)	182, 579, 789
GsuI	CTGGAG	3 cut(s)	420, 511, 654
HaeIII	GGCC	4 cut(s)	264, 552, 818, 858
HhaI	GCGC	1 cut(s)	742
Hin1II	CATG	1 cut(s)	863
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HincII	GTYRAC	4 cut(s)	489, 519, 873, 920
HindII	GTYRAC	4 cut(s)	489, 519, 873, 920
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	6 cut(s)	269, 490, 536, 691, 700, 886
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	4 cut(s)	489, 519, 873, 920
Hpy188I	TCNGA	4 cut(s)	40, 333, 541, 938
Hpy188III	TCNNGA	5 cut(s)	437, 458, 671, 682, 905
Hpy8I	GTNNAC	4 cut(s)	489, 519, 873, 920
HpyAV	CCTTC	2 cut(s)	45, 410
HpyCH4III	ACNGT	4 cut(s)	76, 340, 811, 835
HpyCH4V	TGCA	3 cut(s)	118, 814, 826
HpyF10VI	GCNNNNNNNGC	1 cut(s)	797
HpyF3I	CTNAG	5 cut(s)	56, 332, 383, 696, 924
Hsp92II	CATG	1 cut(s)	863
HspAI	GCGC	1 cut(s)	740
Kzo9I	GATC	5 cut(s)	139, 277, 397, 727, 862
LmnI	GCTCC	2 cut(s)	10, 793
Lsp1109I	GCAGC	3 cut(s)	168, 565, 775
MaeI	CTAG	1 cut(s)	779
MaeIII	GTNAC	1 cut(s)	563
MalI	GATC	5 cut(s)	141, 279, 399, 729, 864
MboI	GATC	5 cut(s)	139, 277, 397, 727, 862
MboII	GAAGA	3 cut(s)	563, 620, 623
MflI	RGATCY	2 cut(s)	139, 727
MhlI	GDGCHC	1 cut(s)	338
MlsI	TGGCCA	1 cut(s)	858
MluCI	AATT	7 cut(s)	119, 144, 148, 512, 636, 677, 932
MluNI	TGGCCA	1 cut(s)	858
MlyI	GAGTC	2 cut(s)	484, 545
MmeI	TCCRAC	1 cut(s)	734
MnlI	CCTC	3 cut(s)	18, 21, 444
Mox20I	TGGCCA	1 cut(s)	858
MscI	TGGCCA	1 cut(s)	858
MseI	TTAA	6 cut(s)	147, 216, 230, 302, 893, 930
Msp20I	TGGCCA	1 cut(s)	858
MspA1I	CMGCKG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	529
MvaI	CCWGG	1 cut(s)	529
MwoI	GCNNNNNNNGC	1 cut(s)	797
NdeII	GATC	5 cut(s)	139, 277, 397, 727, 862
NlaIII	CATG	1 cut(s)	863
NlaIV	GGNNCC	2 cut(s)	6, 141
PceI	AGGCCT	1 cut(s)	264
PfeI	GAWTC	4 cut(s)	269, 691, 700, 886
PfoI	TCCNGGA	1 cut(s)	527
PkrI	GCNGC	3 cut(s)	183, 580, 790
PleI	GAGTC	2 cut(s)	484, 544
PpsI	GAGTC	2 cut(s)	484, 544
PshAI	GACNNNNGTC	1 cut(s)	915
PshBI	ATTAAT	2 cut(s)	147, 893
PsiI	TTATAA	1 cut(s)	846
Psp6I	CCWGG	1 cut(s)	527
PspGI	CCWGG	1 cut(s)	527
PspN4I	GGNNCC	2 cut(s)	6, 141
PspPI	GGNCC	2 cut(s)	584, 817
PsuI	RGATCY	2 cut(s)	139, 727
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	1 cut(s)	721
RsaNI	GTAC	1 cut(s)	720
SaqAI	TTAA	6 cut(s)	147, 216, 230, 302, 893, 930
SatI	GCNGC	3 cut(s)	182, 579, 789
Sau3AI	GATC	5 cut(s)	139, 277, 397, 727, 862
Sau96I	GGNCC	2 cut(s)	584, 817
SchI	GAGTC	2 cut(s)	484, 545
ScrFI	CCNGG	1 cut(s)	529
SduI	GDGCHC	1 cut(s)	338
SinI	GGWCC	1 cut(s)	584
Sse9I	AATT	7 cut(s)	119, 144, 148, 512, 636, 677, 932
SseBI	AGGCCT	1 cut(s)	264
SsiI	CCGC	1 cut(s)	791
SspMI	CTAG	1 cut(s)	779
StuI	AGGCCT	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	527
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	4 cut(s)	76, 340, 811, 835
TaqI	TCGA	2 cut(s)	49, 889
TasI	AATT	7 cut(s)	119, 144, 148, 512, 636, 677, 932
TfiI	GAWTC	4 cut(s)	269, 691, 700, 886
Tru1I	TTAA	6 cut(s)	147, 216, 230, 302, 893, 930
Tru9I	TTAA	6 cut(s)	147, 216, 230, 302, 893, 930
TscAI	CASTG	3 cut(s)	79, 343, 408
TseI	GCWGC	3 cut(s)	181, 578, 788
TspDTI	ATGAA	2 cut(s)	182, 429
TspRI	CASTG	3 cut(s)	79, 343, 408
VpaK11BI	GGWCC	1 cut(s)	584
VspI	ATTAAT	2 cut(s)	147, 893
XagI	CCTNNNNNAGG	1 cut(s)	782
XapI	RAATTY	1 cut(s)	932
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22
XspI	CTAG	1 cut(s)	779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.