RchiOBHm_Chr2g0125081

protein disulfide oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016640
Physical Location & Seq
Reverse (-)
38668259 .. 38669953
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1014 bp
ATGCTCTTGTTCTTCTTCTTCTTCTTCTTCAGCTTCCATAAACTCCTCACCATTCCCACTCCGAAGAGCCCTCTCTCTTGTTCATCACCCACCTCTCAAAAAGGGCGACACCAACCACCTTGTCTCTCTCACCTCCACCACTTATGGTTCTCTCCGTATCATCGACCACCCTCTTCCTTCATCCCCATTATCATACACCAATCTCCACAGTCAGGACCAACCCCAGACAAGTCCTCATCTTTTTCTCCCGACTCCGTCATCAACACCTGGGAACTTATGGACGGTCTTAACGATGAATCCCATTCTCCTTCTTTTGCACAAAAACCACAATCTTCAGTGAAATTCATAGGAGCGCAAAAGAAGCCGCTATGGCAGCATTTATCAGAGGAATCATTGCTGGCAAAGATGGACCCCAATGTGGTTTCCACTTATAGGAGAGCTCTATCTTCTAGCAAATTGCGCACAACGCTGCCTTTTAAGAGCCGCCCTTTGAATTGTTCTACTTCTTCTTCACCAGCACCGGTAAATTCCAATTCCAATGCTTGTTTTCTTCTCCCGGGGAGTGAAGACAAAATCGTCGTCTACTCCACCAGTTTGAGAGGAATCCGAAAGACTTACGAGGATTGCTGCGCTGTTCGGATGATCTTCAGGGGTTTGCGCGTGGCTGTGGATGAGAGGGACATTTCAATGGACTCCCAGTACAAGAAAGAGTTGCAGAATGCAGTTAGAGGTAAAGCACCAGTGAGGCTGCCGCAAGTGTTTGTTAGAGGGAATTATATTGGAGGAGCCGAGGAGGTTAAGCAACTCAATGAGCTTGGAGAATTGGCATTGCTTTTGAAGGGTTTTCCTAGTGCTTCTGCGTTTGGTTGTGATGGATGTGGAGATGTGAGATTTGTGCCGTGTACTACCTGTAATGGCAGCCAAAAGTTGTTTGATGAAAACAAAGGGGAATTGAGGAGGTGCCCGCATTGCAACGAGAACGGATTGATTAGGTGCTCTGCTTGCTGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

337

Amino Acids

37.47

Weight (kDa)

9.01

Isoelectric Point (pI)

58.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 192 - 260 8.4e-11 Glutaredoxin
GRXCR1-2_C PF23733 290 - 336 2.1e-19 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016640)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41330 AT3G57070
malus_domestica MD14G1084700.v1.1
prunus_persica Prupe.7G043200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0125081
rosa_laevigata RLG00000018848
rosa_multiflora Rmu_sc0003505.1_g000023 Rmu_sc0003505.1_g000024
rosa_roxburghii Rroxscaffold_2G00118710
rosa_rugosa Rorug02G0255600
rosa_samantha Rh2AG314000 Rh2BG322300 Rh2DG340700
rosa_wichuraiana Rw2G025410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 575
Acc16I TGCGCA 1 cut(s) 461
AccB1I GGYRCC 1 cut(s) 960
AccI GTMKAC 1 cut(s) 582
AccII CGCG 1 cut(s) 660
AciI CCGC 4 cut(s) 365, 484, 752, 965
AcsI RAATTY 2 cut(s) 341, 526
AcuI CTGAAG 3 cut(s) 13, 318, 631
AfaI GTAC 2 cut(s) 701, 904
AfiI CCNNNNNNNGG 3 cut(s) 212, 418, 432
AgeI ACCGGT 1 cut(s) 520
AgsI TTSAA 3 cut(s) 493, 687, 838
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 3 cut(s) 33, 440, 814
AluI AGCT 3 cut(s) 33, 440, 814
Alw21I GWGCWC 2 cut(s) 442, 998
Alw26I GTCTC 1 cut(s) 128
Ama87I CYCGRG 1 cut(s) 556
ApeKI GCWGC 5 cut(s) 373, 469, 627, 748, 918
ApoI RAATTY 2 cut(s) 341, 526
ArsI GACNNNNNNTTYG 2 cut(s) 564, 596
AsiGI ACCGGT 1 cut(s) 520
AspLEI GCGC 4 cut(s) 355, 462, 632, 660
AspS9I GGNCC 2 cut(s) 215, 409
AsuC2I CCSGG 2 cut(s) 557, 558
AsuHPI GGTGA 4 cut(s) 40, 78, 122, 504
AvaI CYCGRG 1 cut(s) 556
AvaII GGWCC 2 cut(s) 215, 409
BaeGI GKGCMC 1 cut(s) 965
BanI GGYRCC 1 cut(s) 960
BanII GRGCYC 2 cut(s) 71, 442
BbsI GAAGAC 1 cut(s) 573
Bbv12I GWGCWC 2 cut(s) 442, 998
BbvI GCAGC 5 cut(s) 385, 456, 614, 735, 930
BccI CCATC 2 cut(s) 400, 866
BceAI ACGGC 1 cut(s) 883
BciT130I CCWGG 1 cut(s) 268
BcnI CCSGG 2 cut(s) 557, 558
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 2 cut(s) 450, 849
BglI GCCNNNNNGGC 1 cut(s) 370
BisI GCNGC 8 cut(s) 365, 374, 470, 484, 628, 749, 752, 919
BlsI GCNGC 8 cut(s) 366, 375, 471, 485, 629, 750, 753, 920
Bme1390I CCNGG 3 cut(s) 268, 557, 558
Bme18I GGWCC 2 cut(s) 215, 409
BmeT110I CYCGRG 1 cut(s) 556
BmgT120I GGNCC 2 cut(s) 215, 409
BmiI GGNNCC 3 cut(s) 411, 787, 962
BmrFI CCNGG 3 cut(s) 268, 557, 558
BmrI ACTGGG 1 cut(s) 691
BmuI ACTGGG 1 cut(s) 691
BpiI GAAGAC 1 cut(s) 573
BpuMI CCSGG 2 cut(s) 557, 558
BsaJI CCNNGG 4 cut(s) 267, 556, 557, 789
BsaWI WCCGGW 1 cut(s) 520
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 418, 432
Bse118I RCCGGY 1 cut(s) 520
Bse1I ACTGG 3 cut(s) 591, 697, 740
Bse3DI GCAATG 3 cut(s) 392, 827, 967
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 4 cut(s) 267, 556, 557, 789
BseGI GGATG 4 cut(s) 180, 645, 676, 881
BseLI CCNNNNNNNGG 3 cut(s) 212, 418, 432
BseMI GCAATG 3 cut(s) 392, 827, 967
BseNI ACTGG 3 cut(s) 591, 697, 740
BseRI GAGGAG 4 cut(s) 35, 798, 806, 970
BseSI GKGCMC 1 cut(s) 965
BseXI GCAGC 5 cut(s) 385, 456, 614, 735, 930
Bsh1236I CGCG 1 cut(s) 660
BshNI GGYRCC 1 cut(s) 960
BshTI ACCGGT 1 cut(s) 520
BsiHKAI GWGCWC 2 cut(s) 442, 998
BsiHKCI CYCGRG 1 cut(s) 556
BsiSI CCGG 2 cut(s) 521, 557
BslFI GGGAC 1 cut(s) 692
BslI CCNNNNNNNGG 3 cut(s) 212, 418, 432
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 692
BsmI GAATGC 1 cut(s) 724
BsoBI CYCGRG 1 cut(s) 556
Bsp1286I GDGCHC 4 cut(s) 71, 442, 965, 998
Bsp143I GATC 1 cut(s) 642
BspACI CCGC 4 cut(s) 365, 484, 752, 965
BspFNI CGCG 1 cut(s) 660
BspLI GGNNCC 3 cut(s) 411, 787, 962
BspQI GCTCTTC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 960
BsrDI GCAATG 3 cut(s) 392, 827, 967
BsrFI RCCGGY 1 cut(s) 520
BsrI ACTGG 3 cut(s) 591, 697, 740
BssAI RCCGGY 1 cut(s) 520
BssECI CCNNGG 4 cut(s) 267, 556, 557, 789
BssMI GATC 1 cut(s) 642
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 2 cut(s) 210, 284
Bst6I CTCTTC 2 cut(s) 59, 178
BstC8I GCNNGC 3 cut(s) 399, 965, 1003
BstF5I GGATG 4 cut(s) 180, 645, 676, 881
BstFNI CGCG 1 cut(s) 660
BstHHI GCGC 4 cut(s) 355, 462, 632, 660
BstKTI GATC 1 cut(s) 645
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 642
BstMWI GCNNNNNNNGC 7 cut(s) 361, 370, 373, 459, 466, 969, 1002
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 3 cut(s) 266, 555, 556
BstSLI GKGCMC 1 cut(s) 965
BstUI CGCG 1 cut(s) 660
BstV1I GCAGC 5 cut(s) 385, 456, 614, 735, 930
BstV2I GAAGAC 1 cut(s) 573
BtsCI GGATG 4 cut(s) 180, 645, 676, 881
BtsIMutI CAGTG 2 cut(s) 342, 747
Cac8I GCNNGC 3 cut(s) 399, 965, 1003
CfoI GCGC 4 cut(s) 355, 462, 632, 660
Cfr10I RCCGGY 1 cut(s) 520
Cfr13I GGNCC 2 cut(s) 215, 409
Cfr9I CCCGGG 1 cut(s) 556
Csp6I GTAC 2 cut(s) 700, 903
CspAI ACCGGT 1 cut(s) 520
CviQI GTAC 2 cut(s) 700, 903
DpnI GATC 1 cut(s) 644
DpnII GATC 1 cut(s) 642
DrdI GACNNNNNNGTC 1 cut(s) 575
DseDI GACNNNNNNGTC 1 cut(s) 575
Eam1104I CTCTTC 2 cut(s) 59, 178
EarI CTCTTC 2 cut(s) 59, 178
Ecl136II GAGCTC 1 cut(s) 440
Eco24I GRGCYC 2 cut(s) 71, 442
Eco47I GGWCC 2 cut(s) 215, 409
Eco53kI GAGCTC 1 cut(s) 440
Eco57I CTGAAG 3 cut(s) 13, 318, 631
Eco88I CYCGRG 1 cut(s) 556
EcoICRI GAGCTC 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 266
EcoT38I GRGCYC 2 cut(s) 71, 442
FaiI YATR 8 cut(s) 39, 145, 194, 278, 347, 370, 432, 777
FaqI GGGAC 1 cut(s) 692
FauI CCCGC 1 cut(s) 972
FblI GTMKAC 1 cut(s) 582
Fnu4HI GCNGC 8 cut(s) 365, 374, 470, 484, 628, 749, 752, 919
FokI GGATG 4 cut(s) 167, 652, 683, 888
FriOI GRGCYC 2 cut(s) 71, 442
Fsp4HI GCNGC 8 cut(s) 365, 374, 470, 484, 628, 749, 752, 919
FspBI CTAG 2 cut(s) 450, 849
FspI TGCGCA 1 cut(s) 461
GlaI GCGC 4 cut(s) 354, 461, 631, 659
GluI GCNGC 8 cut(s) 365, 374, 470, 484, 628, 749, 752, 919
HapII CCGG 2 cut(s) 521, 557
HhaI GCGC 4 cut(s) 355, 462, 632, 660
Hin6I GCGC 4 cut(s) 353, 460, 630, 658
HinP1I GCGC 4 cut(s) 353, 460, 630, 658
HinfI GANTC 5 cut(s) 251, 296, 389, 603, 692
HpaII CCGG 2 cut(s) 521, 557
HphI GGTGA 4 cut(s) 40, 78, 122, 504
Hpy166II GTNNAC 2 cut(s) 583, 903
Hpy188I TCNGA 4 cut(s) 63, 385, 608, 639
Hpy188III TCNNGA 2 cut(s) 213, 248
Hpy8I GTNNAC 2 cut(s) 583, 903
Hpy99I CGWCG 1 cut(s) 581
HpyAV CCTTC 3 cut(s) 187, 318, 832
HpyCH4III ACNGT 2 cut(s) 210, 284
HpyCH4V TGCA 4 cut(s) 317, 715, 722, 972
HpyF10VI GCNNNNNNNGC 7 cut(s) 361, 370, 373, 459, 466, 969, 1002
HspAI GCGC 4 cut(s) 353, 460, 630, 658
Kzo9I GATC 1 cut(s) 642
LguI GCTCTTC 1 cut(s) 59
LmnI GCTCC 2 cut(s) 350, 785
Lsp1109I GCAGC 5 cut(s) 385, 456, 614, 735, 930
MaeI CTAG 2 cut(s) 450, 849
MalI GATC 1 cut(s) 644
MboI GATC 1 cut(s) 642
MhlI GDGCHC 4 cut(s) 71, 442, 965, 998
MluCI AATT 8 cut(s) 341, 455, 493, 526, 532, 772, 821, 950
MlyI GAGTC 2 cut(s) 245, 686
MseI TTAA 3 cut(s) 288, 477, 798
MslI CAYNNNNRTG 1 cut(s) 686
MspI CCGG 2 cut(s) 521, 557
MspR9I CCNGG 3 cut(s) 268, 557, 558
Mva1269I GAATGC 1 cut(s) 724
MvaI CCWGG 1 cut(s) 268
MvnI CGCG 1 cut(s) 660
MwoI GCNNNNNNNGC 7 cut(s) 361, 370, 373, 459, 466, 969, 1002
NciI CCSGG 2 cut(s) 557, 558
NdeII GATC 1 cut(s) 642
NlaIV GGNNCC 3 cut(s) 411, 787, 962
NmeAIII GCCGAG 1 cut(s) 814
NsbI TGCGCA 1 cut(s) 461
PciSI GCTCTTC 1 cut(s) 59
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PctI GAATGC 1 cut(s) 724
PfeI GAWTC 3 cut(s) 296, 389, 603
PflFI GACNNNGTC 1 cut(s) 254
PinAI ACCGGT 1 cut(s) 520
PkrI GCNGC 8 cut(s) 366, 375, 471, 485, 629, 750, 753, 920
PleI GAGTC 2 cut(s) 245, 686
PpsI GAGTC 2 cut(s) 245, 686
Psp124BI GAGCTC 1 cut(s) 442
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 3 cut(s) 411, 787, 962
PspPI GGNCC 2 cut(s) 215, 409
PsyI GACNNNGTC 1 cut(s) 254
RsaI GTAC 2 cut(s) 701, 904
RsaNI GTAC 2 cut(s) 700, 903
RseI CAYNNNNRTG 1 cut(s) 686
SacI GAGCTC 1 cut(s) 442
SapI GCTCTTC 1 cut(s) 59
SaqAI TTAA 3 cut(s) 288, 477, 798
SatI GCNGC 8 cut(s) 365, 374, 470, 484, 628, 749, 752, 919
Sau3AI GATC 1 cut(s) 642
Sau96I GGNCC 2 cut(s) 215, 409
SchI GAGTC 2 cut(s) 245, 686
ScrFI CCNGG 3 cut(s) 268, 557, 558
SduI GDGCHC 4 cut(s) 71, 442, 965, 998
SinI GGWCC 2 cut(s) 215, 409
SmaI CCCGGG 1 cut(s) 558
SmiMI CAYNNNNRTG 1 cut(s) 686
Sse9I AATT 8 cut(s) 341, 455, 493, 526, 532, 772, 821, 950
SsiI CCGC 4 cut(s) 365, 484, 752, 965
SspMI CTAG 2 cut(s) 450, 849
SstI GAGCTC 1 cut(s) 442
StyD4I CCNGG 3 cut(s) 266, 555, 556
TaaI ACNGT 2 cut(s) 210, 284
TaqI TCGA 1 cut(s) 163
TasI AATT 8 cut(s) 341, 455, 493, 526, 532, 772, 821, 950
TatI WGTACW 2 cut(s) 699, 902
TauI GCSGC 3 cut(s) 367, 486, 754
TfiI GAWTC 3 cut(s) 296, 389, 603
Tru1I TTAA 3 cut(s) 288, 477, 798
Tru9I TTAA 3 cut(s) 288, 477, 798
TscAI CASTG 2 cut(s) 342, 747
TseI GCWGC 5 cut(s) 373, 469, 627, 748, 918
TspDTI ATGAA 5 cut(s) 72, 169, 309, 334, 951
TspGWI ACGGA 3 cut(s) 144, 244, 996
TspMI CCCGGG 1 cut(s) 556
TspRI CASTG 2 cut(s) 342, 747
Tth111I GACNNNGTC 1 cut(s) 254
VpaK11BI GGWCC 2 cut(s) 215, 409
XapI RAATTY 2 cut(s) 341, 526
XmaI CCCGGG 1 cut(s) 556
XmiI GTMKAC 1 cut(s) 582
XspI CTAG 2 cut(s) 450, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.