Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012989

Physical Location & Seq

Genomic Coordinates Reverse (-)

40061817 .. 40062955

Gene Structure 1139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCAGCAGCTGCGGCCGTAGCTGCCACCCATCCGCAGATGCAGCAGACTCCTCAGTATCACCATCACAGGCAGCCGCAGGTGGGGCATTTTGGCTCTCCACCAAATCCAAATGGGCAATTTGAACATCCATTCCTGGCGAGGCAGTCACAGGCAGTGCATAGGATGGGGGCACCAATTCACAGTCCAGCTGTGCCAGGGTATATTGAGGACATGGAATCAGCTAATGCAACTGGTGCAACTGGCAGGAAAGTTCTTACTCTTTTTCCTACTGGGGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009933 GO:0009966 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048583 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

94

Amino Acids

10.07

Weight (kDa)

6.69

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40970 AT3G10760 AT5G05090
fragaria_vesca	FvH4_6g25730
malus_domestica	MD12G1092500.v1.1 MD12G1094000.v1.1
prunus_persica	Prupe.7G027500_v2.0.a1
pyrus_communis	pycom12g07980
rosa_chinensis	RchiOBHm_Chr2g0125991
rosa_laevigata	RLG00000018885
rosa_multiflora	Rmu_sc0006201.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117470
rosa_rugosa	Rorug02G0260200
rosa_samantha	Rh2AG318000 Rh2BG326400 Rh2DG344000 Rh2DG344300
rosa_wichuraiana	Rw2G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	70
Acc36I	ACCTGC	1 cut(s)	70
AccB1I	GGYRCC	1 cut(s)	172
AciI	CCGC	3 cut(s)	14, 35, 77
AcoI	YGGCCR	1 cut(s)	15
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	125
AjnI	CCWGG	2 cut(s)	135, 196
AloI	GAACNNNNNNTCC	2 cut(s)	117, 149
AluBI	AGCT	4 cut(s)	11, 23, 191, 224
AluI	AGCT	4 cut(s)	11, 23, 191, 224
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	6 cut(s)	5, 8, 11, 23, 43, 73
AsuHPI	GGTGA	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	172
BbvI	GCAGC	5 cut(s)	10, 17, 20, 55, 85
BccI	CCATC	3 cut(s)	39, 72, 160
BceAI	ACGGC	1 cut(s)	2
BciT130I	CCWGG	2 cut(s)	137, 198
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	8 cut(s)	6, 9, 12, 15, 24, 44, 74, 77
BlsI	GCNGC	8 cut(s)	7, 10, 13, 16, 25, 45, 75, 78
Bme1390I	CCNGG	2 cut(s)	137, 198
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	2 cut(s)	137, 198
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	30
BmuI	ACTGGG	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	3 cut(s)	238, 247, 277
BseBI	CCWGG	2 cut(s)	137, 198
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	4 cut(s)	31, 127, 171, 283
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	3 cut(s)	238, 247, 277
BseRI	GAGGAG	1 cut(s)	42
BseSI	GKGCMC	1 cut(s)	175
BseX3I	CGGCCG	1 cut(s)	15
BseXI	GCAGC	5 cut(s)	10, 17, 20, 55, 85
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	17
BshNI	GGYRCC	1 cut(s)	172
BsiEI	CGRYCG	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	83
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	175
BspACI	CCGC	3 cut(s)	14, 35, 77
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	174
BspMI	ACCTGC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	172
BsrI	ACTGG	3 cut(s)	238, 247, 277
BssECI	CCNNGG	1 cut(s)	197
Bst2UI	CCWGG	2 cut(s)	137, 198
Bst4CI	ACNGT	1 cut(s)	185
BstAPI	GCANNNNNTGC	2 cut(s)	11, 236
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	4 cut(s)	31, 127, 171, 283
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 14, 20, 23, 43, 85, 236
BstNI	CCWGG	2 cut(s)	137, 198
BstSCI	CCNGG	2 cut(s)	135, 196
BstSLI	GKGCMC	1 cut(s)	175
BstV1I	GCAGC	5 cut(s)	10, 17, 20, 55, 85
BstZI	CGGCCG	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	17
BtsCI	GGATG	4 cut(s)	31, 127, 171, 283
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	70
CaiI	CAGNNNCTG	1 cut(s)	11
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	7 cut(s)	11, 17, 23, 76, 96, 191, 224
CviKI_1	RGCY	7 cut(s)	11, 17, 23, 76, 96, 191, 224
DdeI	CTNAG	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	15
EagI	CGGCCG	1 cut(s)	15
EclXI	CGGCCG	1 cut(s)	15
Eco52I	CGGCCG	1 cut(s)	15
EcoRII	CCWGG	2 cut(s)	135, 196
FaeI	CATG	1 cut(s)	217
FaiI	YATR	3 cut(s)	162, 204, 215
FatI	CATG	1 cut(s)	213
Fnu4HI	GCNGC	8 cut(s)	6, 9, 12, 15, 24, 44, 74, 77
FokI	GGATG	3 cut(s)	18, 114, 178
Fsp4HI	GCNGC	8 cut(s)	6, 9, 12, 15, 24, 44, 74, 77
GluI	GCNGC	8 cut(s)	6, 9, 12, 15, 24, 44, 74, 77
HaeIII	GGCC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	217
HinfI	GANTC	2 cut(s)	49, 218
HphI	GGTGA	1 cut(s)	53
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	4 cut(s)	43, 160, 230, 239
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 14, 20, 23, 43, 85, 236
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	217
Lsp1109I	GCAGC	5 cut(s)	10, 17, 20, 55, 85
LweI	GCATC	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	2 cut(s)	119, 177
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	3 cut(s)	63, 135, 202
MspA1I	CMGCKG	2 cut(s)	11, 191
MspR9I	CCNGG	2 cut(s)	137, 198
MvaI	CCWGG	2 cut(s)	137, 198
MwoI	GCNNNNNNNGC	7 cut(s)	11, 14, 20, 23, 43, 85, 236
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	147
PaqCI	CACCTGC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	8 cut(s)	7, 10, 13, 16, 25, 45, 75, 78
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp6I	CCWGG	2 cut(s)	135, 196
PspGI	CCWGG	2 cut(s)	135, 196
PspN4I	GGNNCC	1 cut(s)	174
PstNI	CAGNNNCTG	1 cut(s)	11
PvuII	CAGCTG	2 cut(s)	11, 191
SatI	GCNGC	8 cut(s)	6, 9, 12, 15, 24, 44, 74, 77
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	2 cut(s)	137, 198
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	5 cut(s)	13, 25, 84, 193, 226
SfaNI	GCATC	1 cut(s)	30
Sse9I	AATT	2 cut(s)	119, 177
SsiI	CCGC	3 cut(s)	14, 35, 77
StyD4I	CCNGG	2 cut(s)	135, 196
TaaI	ACNGT	1 cut(s)	185
TasI	AATT	2 cut(s)	119, 177
TauI	GCSGC	2 cut(s)	17, 79
TfiI	GAWTC	1 cut(s)	218
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	147
TseI	GCWGC	6 cut(s)	5, 8, 11, 23, 43, 73
Tsp45I	GTSAC	1 cut(s)	147
TspRI	CASTG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.