Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010293

Physical Location & Seq

Genomic Coordinates Forward (+)

53246075 .. 53246374

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGGGAAGGGAATGCCATACTCCGACGTCGAAAAGGGGCCAGAAAGGGGGCAAGAGAAGAGGCGGCACAGGAGTCGACCACCTCCGCCACAAATTTGCCCCCCACCAGAGAAGCCATGGTTTCCGTGGCTCGTGCCAGTCATATTTTCAGCCAATCTCATCATGTTCATCATCACCATGTATATCAACGACTGCCCGTCTCAAGAGAATCATCCTCGGTGCGTTTTGCCTTTCTTGAAGAGGTTCTCTTTCCAACCCTTCAAAGAAAACATCCTCCTTGGTCCTTCTGCACTCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

99

Amino Acids

11.48

Weight (kDa)

9.45

Isoelectric Point (pI)

80.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52580
fragaria_vesca	FvH4_6g29990 FvH4_6g29990
prunus_persica	Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136001 RchiOBHm_Chr2g0136011
rosa_laevigata	RLG00000019496
rosa_multiflora	Rmu_ssc0000343.1_g000028
rosa_roxburghii	Rroxscaffold_2G00108700
rosa_rugosa	Rorug02G0327300 Rorug02G0327400 Rorug02G0327500 Rorug02G0327600
rosa_samantha	Rh2AG379300 Rh2BG385900 Rh2CG364900 Rh2DG402100
rosa_wichuraiana	Rw2G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	30
AccI	GTMKAC	1 cut(s)	76
AciI	CCGC	2 cut(s)	64, 86
AcsI	RAATTY	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	238, 262
AhdI	GACNNNNNGTC	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	204
AoxI	GGCC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	93
Asp700I	GAANNNNTTC	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	38, 281
AsuHPI	GGTGA	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	281
BauI	CACGAG	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BcoDI	GTCTC	1 cut(s)	204
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme18I	GGWCC	1 cut(s)	281
BmeRI	GACNNNNNGTC	1 cut(s)	196
BmgT120I	GGNCC	2 cut(s)	38, 281
BmiI	GGNNCC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	27
BsaJI	CCNNGG	4 cut(s)	116, 125, 215, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	137
BseDI	CCNNGG	4 cut(s)	116, 125, 215, 277
BseGI	GGATG	2 cut(s)	211, 270
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	137
BsgI	GTGCAG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmAI	GTCTC	1 cut(s)	204
BsmBI	CGTCTC	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	40
Bsp19I	CCATGG	1 cut(s)	116
BspACI	CCGC	2 cut(s)	64, 86
BspANI	GGCC	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	137
BssECI	CCNNGG	4 cut(s)	116, 125, 215, 277
BssNI	GRCGYC	1 cut(s)	27
BssSI	CACGAG	1 cut(s)	131
BssT1I	CCWWGG	2 cut(s)	116, 277
Bst2BI	CACGAG	1 cut(s)	131
Bst6I	CTCTTC	2 cut(s)	53, 233
BstACI	GRCGYC	1 cut(s)	27
BstBAI	YACGTR	1 cut(s)	297
BstDSI	CCRYGG	2 cut(s)	116, 125
BstF5I	GGATG	2 cut(s)	211, 270
BstMAI	GTCTC	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	40
BtgI	CCRYGG	2 cut(s)	116, 125
BtsCI	GGATG	2 cut(s)	211, 270
Cfr13I	GGNCC	2 cut(s)	38, 281
CviAII	CATG	3 cut(s)	117, 163, 178
CviJI	RGCY	4 cut(s)	40, 115, 130, 152
CviKI_1	RGCY	4 cut(s)	40, 115, 130, 152
DriI	GACNNNNNGTC	1 cut(s)	196
Eam1104I	CTCTTC	2 cut(s)	53, 233
Eam1105I	GACNNNNNGTC	1 cut(s)	196
EarI	CTCTTC	2 cut(s)	53, 233
EciI	GGCGGA	1 cut(s)	75
Eco130I	CCWWGG	2 cut(s)	116, 277
Eco47I	GGWCC	1 cut(s)	281
EcoT14I	CCWWGG	2 cut(s)	116, 277
ErhI	CCWWGG	2 cut(s)	116, 277
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	3 cut(s)	120, 166, 181
FaiI	YATR	6 cut(s)	19, 118, 143, 164, 179, 183
FatI	CATG	3 cut(s)	116, 162, 177
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	2 cut(s)	198, 257
Fsp4HI	GCNGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	120, 166, 181
HincII	GTYRAC	1 cut(s)	77
HindII	GTYRAC	1 cut(s)	77
HinfI	GANTC	2 cut(s)	73, 208
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	203, 235
Hpy8I	GTNNAC	1 cut(s)	77
Hpy99I	CGWCG	2 cut(s)	29, 32
HpyAV	CCTTC	2 cut(s)	268, 294
HpyCH4IV	ACGT	2 cut(s)	27, 296
HpyCH4V	TGCA	1 cut(s)	290
HpySE526I	ACGT	2 cut(s)	27, 296
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	120, 166, 181
LpnPI	CCDG	4 cut(s)	54, 55, 120, 150
MaeII	ACGT	2 cut(s)	27, 296
MboII	GAAGA	2 cut(s)	70, 250
MluCI	AATT	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	2 cut(s)	48, 277
MnlI	CCTC	5 cut(s)	54, 93, 225, 234, 284
MroXI	GAANNNNTTC	1 cut(s)	242
MslI	CAYNNNNRTG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	18
NcoI	CCATGG	1 cut(s)	116
NlaIII	CATG	3 cut(s)	120, 166, 181
NlaIV	GGNNCC	1 cut(s)	39
PctI	GAATGC	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
Ppu21I	YACGTR	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	38, 281
RseI	CAYNNNNRTG	1 cut(s)	176
SalI	GTCGAC	1 cut(s)	75
SatI	GCNGC	1 cut(s)	65
Sau96I	GGNCC	2 cut(s)	38, 281
SchI	GAGTC	1 cut(s)	82
SetI	ASST	4 cut(s)	30, 85, 245, 299
SinI	GGWCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	1 cut(s)	93
SsiI	CCGC	2 cut(s)	64, 86
StyI	CCWWGG	2 cut(s)	116, 277
TaiI	ACGT	2 cut(s)	30, 299
TaqI	TCGA	2 cut(s)	30, 76
TasI	AATT	1 cut(s)	93
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	157
TspGWI	ACGGA	1 cut(s)	114
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	1 cut(s)	93
XcmI	CCANNNNNNNNNTGG	2 cut(s)	114, 123
XmiI	GTMKAC	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	242
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.