RchiOBHm_Chr2g0136311

Protein PHLOEM PROTEIN 2-LIKE A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011580
Physical Location & Seq
Reverse (-)
53676976 .. 53677358
383 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
ATGGAGGTGGCGAAACTATCGCGTGTATGCTGGCTACATCTGAGAGGACACATAAAGATGTCTGAGCTCTCATCCGGCGTAGAGTATGAGATTGCATACATAGTCAAACTAACAAATGGAGCATCTGGATGGGAACTCCCTATCACACTCAAACTAAGGCACCCAGATGGCAGAGAACAAACGCGCCGACAAAGTATACTCGAGAAGCCGAGAGGAGAGTGGATGGAGCTCAGTGGTGGTACCTTTCGGACCAACCAAGAAGAAACTGGAGAATTCTGGTTTGATCTTTGTGAACATGGTGGACACTGGAAAACTGGGCTCATCGTCAAGGGTATTATTGCCAAGCCGAAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

118

Amino Acids

13.55

Weight (kDa)

8.62

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 2 - 116 3.1e-23 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 239
AccB1I GGYRCC 2 cut(s) 159, 239
AccI GTMKAC 1 cut(s) 196
AccII CGCG 2 cut(s) 22, 184
AcsI RAATTY 1 cut(s) 272
AfaI GTAC 1 cut(s) 241
AluBI AGCT 2 cut(s) 67, 229
AluI AGCT 2 cut(s) 67, 229
Alw21I GWGCWC 2 cut(s) 69, 231
Ama87I CYCGRG 1 cut(s) 200
ApoI RAATTY 1 cut(s) 272
Asp718I GGTACC 1 cut(s) 239
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 249
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 1 cut(s) 249
BanI GGYRCC 2 cut(s) 159, 239
BanII GRGCYC 3 cut(s) 69, 231, 321
Bbv12I GWGCWC 2 cut(s) 69, 231
BccI CCATC 3 cut(s) 123, 161, 217
Bme18I GGWCC 1 cut(s) 249
BmeT110I CYCGRG 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 2 cut(s) 161, 241
BmrI ACTGGG 1 cut(s) 324
BmsI GCATC 1 cut(s) 131
BmuI ACTGGG 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 288
Bse1I ACTGG 3 cut(s) 271, 311, 319
BseGI GGATG 3 cut(s) 71, 134, 228
BseMII CTCAG 3 cut(s) 32, 54, 244
BseNI ACTGG 3 cut(s) 271, 311, 319
BseRI GAGGAG 1 cut(s) 228
Bsh1236I CGCG 2 cut(s) 22, 184
BshNI GGYRCC 2 cut(s) 159, 239
BsiHKAI GWGCWC 2 cut(s) 69, 231
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 1 cut(s) 75
BsoBI CYCGRG 1 cut(s) 200
Bsp1286I GDGCHC 3 cut(s) 69, 231, 321
Bsp143I GATC 1 cut(s) 283
BspCNI CTCAG 3 cut(s) 33, 55, 243
BspFNI CGCG 2 cut(s) 22, 184
BspLI GGNNCC 2 cut(s) 161, 241
BspT107I GGYRCC 2 cut(s) 159, 239
BsrI ACTGG 3 cut(s) 271, 311, 319
BssMI GATC 1 cut(s) 283
BssNAI GTATAC 1 cut(s) 197
Bst1107I GTATAC 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 4 cut(s) 41, 63, 155, 230
BstF5I GGATG 3 cut(s) 71, 134, 228
BstFNI CGCG 2 cut(s) 22, 184
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 1 cut(s) 286
BstMBI GATC 1 cut(s) 283
BstUI CGCG 2 cut(s) 22, 184
BstZ17I GTATAC 1 cut(s) 197
BtsCI GGATG 3 cut(s) 71, 134, 228
BtsIMutI CAGTG 2 cut(s) 238, 304
Cac8I GCNNGC 1 cut(s) 32
CfoI GCGC 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 249
Csp6I GTAC 1 cut(s) 240
CviAII CATG 1 cut(s) 296
CviJI RGCY 6 cut(s) 34, 67, 208, 229, 319, 346
CviKI_1 RGCY 6 cut(s) 34, 67, 208, 229, 319, 346
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 4 cut(s) 41, 63, 155, 230
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
Ecl136II GAGCTC 2 cut(s) 67, 229
Eco24I GRGCYC 3 cut(s) 69, 231, 321
Eco47I GGWCC 1 cut(s) 249
Eco53kI GAGCTC 2 cut(s) 67, 229
Eco88I CYCGRG 1 cut(s) 200
EcoICRI GAGCTC 2 cut(s) 67, 229
EcoRI GAATTC 1 cut(s) 272
EcoT38I GRGCYC 3 cut(s) 69, 231, 321
FaeI CATG 1 cut(s) 299
FaiI YATR 7 cut(s) 28, 53, 87, 97, 101, 197, 297
FatI CATG 1 cut(s) 295
FblI GTMKAC 1 cut(s) 196
FokI GGATG 3 cut(s) 58, 141, 235
FriOI GRGCYC 3 cut(s) 69, 231, 321
GlaI GCGC 1 cut(s) 185
GsuI CTGGAG 1 cut(s) 288
HapII CCGG 1 cut(s) 75
HhaI GCGC 1 cut(s) 186
Hin1II CATG 1 cut(s) 299
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HpaII CCGG 1 cut(s) 75
Hpy166II GTNNAC 3 cut(s) 197, 293, 302
Hpy188I TCNGA 3 cut(s) 42, 64, 249
Hpy188III TCNNGA 2 cut(s) 126, 202
Hpy8I GTNNAC 3 cut(s) 197, 293, 302
HpyCH4V TGCA 1 cut(s) 95
HpyF3I CTNAG 4 cut(s) 41, 63, 155, 230
Hsp92II CATG 1 cut(s) 299
HspAI GCGC 1 cut(s) 184
KpnI GGTACC 1 cut(s) 243
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 2 cut(s) 119, 226
LpnPI CCDG 8 cut(s) 16, 88, 111, 177, 252, 262, 292, 300
LweI GCATC 1 cut(s) 131
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 1 cut(s) 272
MhlI GDGCHC 3 cut(s) 69, 231, 321
MluCI AATT 1 cut(s) 272
MnlI CCTC 2 cut(s) 38, 206
MslI CAYNNNNRTG 3 cut(s) 56, 127, 165
MspI CCGG 1 cut(s) 75
MvnI CGCG 2 cut(s) 22, 184
NdeII GATC 1 cut(s) 283
NlaIII CATG 1 cut(s) 299
NlaIV GGNNCC 2 cut(s) 161, 241
NmeAIII GCCGAG 1 cut(s) 234
PaeR7I CTCGAG 1 cut(s) 200
Psp124BI GAGCTC 2 cut(s) 69, 231
PspN4I GGNNCC 2 cut(s) 161, 241
PspPI GGNCC 1 cut(s) 249
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
RseI CAYNNNNRTG 3 cut(s) 56, 127, 165
SacI GAGCTC 2 cut(s) 69, 231
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 1 cut(s) 249
SduI GDGCHC 3 cut(s) 69, 231, 321
SetI ASST 4 cut(s) 9, 69, 231, 245
SfaNI GCATC 1 cut(s) 131
Sfr274I CTCGAG 1 cut(s) 200
SinI GGWCC 1 cut(s) 249
SlaI CTCGAG 1 cut(s) 200
SmiMI CAYNNNNRTG 3 cut(s) 56, 127, 165
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 1 cut(s) 272
SstI GAGCTC 2 cut(s) 69, 231
TaqI TCGA 1 cut(s) 201
TasI AATT 1 cut(s) 272
TscAI CASTG 2 cut(s) 238, 311
TspRI CASTG 2 cut(s) 238, 311
VpaK11BI GGWCC 1 cut(s) 249
XapI RAATTY 1 cut(s) 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 263
XhoI CTCGAG 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.