RchiOBHm_Chr2g0137311

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010876
Physical Location & Seq
Reverse (-)
54981190 .. 54984102
2913 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 333 bp
ATGTACGTGAAAGTCAGCATGGATGGTGCGCCTTTTCTTCGTAAAATAGACTTGGGCATGCACAACTGCTATGCAGATCTTGCTGTGGCCTTGGAGAAGCTATTTGGTTGTTTTGGTATAGGCGAGGTGTTGAAGGATGCAGACAGCTGCGAGTTTGCACCCATTTATGAAGACAAGGATGGAGATTGGATGCTAGTGGGAGACGTCCCTTGGGAGATGTTTCTCGAGTCATGCAAGAGACTACGGATCATGAAGAGATCGGATGCCAAGGGATTTGGAGTCCTGGAGTCCAAGGGCTTCCTCAAGGCAACGATGAAAGACGAACCTAAATAA

Protein Analysis

110

Amino Acids

12.41

Weight (kDa)

5.15

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 1 - 92 1.1e-39 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15580 AT1G52830 AT3G15540
fragaria_vesca FvH4_6g30860
malus_domestica MD17G1198100.v1.1
prunus_persica Prupe.3G074800_v2.0.a1
pyrus_communis pycom09g13290 pycom17g20300
rosa_chinensis RchiOBHm_Chr2g0137311 RchiOBHm_Chr2g0137321
rosa_laevigata RLG00000019650
rosa_multiflora Rmu_sc0010947.1_g000009
rosa_roxburghii Rroxscaffold_2G00107210
rosa_rugosa Rorug02G0341100 Rorug02G0341100 Rorug02G0341100
rosa_samantha Rh2AG389300 Rh2BG397200 Rh2DG412100
rosa_wichuraiana Rw2G031920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 207
AclWI GGATC 1 cut(s) 254
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 133
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 2 cut(s) 100, 147
AluI AGCT 2 cut(s) 100, 147
Alw26I GTCTC 2 cut(s) 195, 232
AlwI GGATC 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 134
BccI CCATC 2 cut(s) 17, 173
BciT130I CCWGG 1 cut(s) 284
BcoDI GTCTC 2 cut(s) 195, 232
BfaI CTAG 1 cut(s) 194
BglII AGATCT 1 cut(s) 76
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 224
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 3 cut(s) 127, 180, 253
BpiI GAAGAC 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 287
BsaAI YACGTR 1 cut(s) 7
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 4 cut(s) 90, 209, 267, 291
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 4 cut(s) 90, 209, 267, 291
BseGI GGATG 5 cut(s) 28, 142, 184, 195, 268
BseXI GCAGC 1 cut(s) 134
BshFI GGCC 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 224
BslFI GGGAC 1 cut(s) 191
BsmAI GTCTC 2 cut(s) 195, 232
BsmBI CGTCTC 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 191
BsnI GGCC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 224
Bsp143I GATC 3 cut(s) 76, 246, 257
BspANI GGCC 1 cut(s) 89
BspHI TCATGA 1 cut(s) 249
BspPI GGATC 1 cut(s) 254
BssECI CCNNGG 4 cut(s) 90, 209, 267, 291
BssMI GATC 3 cut(s) 76, 246, 257
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 4 cut(s) 90, 209, 267, 291
Bst2UI CCWGG 1 cut(s) 284
Bst6I CTCTTC 1 cut(s) 248
BstACI GRCGYC 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 80
BstBAI YACGTR 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 59
BstF5I GGATG 5 cut(s) 28, 142, 184, 195, 268
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 3 cut(s) 79, 249, 260
BstMAI GTCTC 2 cut(s) 195, 232
BstMBI GATC 3 cut(s) 76, 246, 257
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 284
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 134
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 5 cut(s) 28, 142, 184, 195, 268
Cac8I GCNNGC 1 cut(s) 59
CciI TCATGA 1 cut(s) 249
CfoI GCGC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 4
CviAII CATG 4 cut(s) 19, 58, 231, 250
CviJI RGCY 4 cut(s) 89, 100, 147, 297
CviKI_1 RGCY 4 cut(s) 89, 100, 147, 297
CviQI GTAC 1 cut(s) 4
DpnI GATC 3 cut(s) 78, 248, 259
DpnII GATC 3 cut(s) 76, 246, 257
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Eco130I CCWWGG 4 cut(s) 90, 209, 267, 291
Eco88I CYCGRG 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 282
EcoT14I CCWWGG 4 cut(s) 90, 209, 267, 291
ErhI CCWWGG 4 cut(s) 90, 209, 267, 291
Esp3I CGTCTC 1 cut(s) 195
FaeI CATG 4 cut(s) 22, 61, 234, 253
FaiI YATR 7 cut(s) 20, 59, 72, 119, 168, 232, 251
FaqI GGGAC 1 cut(s) 191
FatI CATG 4 cut(s) 18, 57, 230, 249
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 5 cut(s) 35, 149, 191, 202, 275
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 1 cut(s) 194
GlaI GCGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 148
GsuI CTGGAG 1 cut(s) 305
HaeIII GGCC 1 cut(s) 89
HhaI GCGC 1 cut(s) 31
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 4 cut(s) 22, 61, 234, 253
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HinfI GANTC 3 cut(s) 227, 279, 287
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 2 cut(s) 224, 250
HpyAV CCTTC 1 cut(s) 127
HpyCH4IV ACGT 2 cut(s) 6, 204
HpyCH4V TGCA 5 cut(s) 61, 74, 140, 158, 234
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpySE526I ACGT 2 cut(s) 6, 204
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 4 cut(s) 22, 61, 234, 253
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 3 cut(s) 76, 246, 257
LpnPI CCDG 2 cut(s) 269, 296
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 3 cut(s) 127, 180, 253
MaeI CTAG 1 cut(s) 194
MaeII ACGT 2 cut(s) 6, 204
MalI GATC 3 cut(s) 78, 248, 259
MboI GATC 3 cut(s) 76, 246, 257
MboII GAAGA 3 cut(s) 29, 182, 265
MflI RGATCY 1 cut(s) 76
MlyI GAGTC 3 cut(s) 236, 288, 296
MnlI CCTC 2 cut(s) 118, 311
MspA1I CMGCKG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 3 cut(s) 76, 246, 257
NlaIII CATG 4 cut(s) 22, 61, 234, 253
NspI RCATGY 1 cut(s) 61
PaeI GCATGC 1 cut(s) 61
PaeR7I CTCGAG 1 cut(s) 224
PagI TCATGA 1 cut(s) 249
PfoI TCCNGGA 1 cut(s) 282
PkrI GCNGC 1 cut(s) 149
PleI GAGTC 3 cut(s) 235, 287, 295
PpsI GAGTC 3 cut(s) 235, 287, 295
Ppu21I YACGTR 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PsuI RGATCY 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 147
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 3 cut(s) 76, 246, 257
SchI GAGTC 3 cut(s) 236, 288, 296
ScrFI CCNGG 1 cut(s) 284
SetI ASST 6 cut(s) 9, 102, 129, 149, 207, 328
SfaNI GCATC 3 cut(s) 127, 180, 253
Sfr274I CTCGAG 1 cut(s) 224
SlaI CTCGAG 1 cut(s) 224
SmlI CTYRAG 2 cut(s) 224, 302
SmoI CTYRAG 2 cut(s) 224, 302
SphI GCATGC 1 cut(s) 61
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 282
StyI CCWWGG 4 cut(s) 90, 209, 267, 291
TaiI ACGT 2 cut(s) 9, 207
TaqI TCGA 1 cut(s) 225
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 3 cut(s) 183, 266, 329
TspGWI ACGGA 1 cut(s) 259
XceI RCATGY 1 cut(s) 61
XhoI CTCGAG 1 cut(s) 224
XspI CTAG 1 cut(s) 194
ZraI GACGTC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.