Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016945

Physical Location & Seq

Genomic Coordinates Forward (+)

61150071 .. 61150894

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCGCCTCTTCTCGAGTCTGTTCCGGTTGGTCTTCGACGGCTTTGTCAAGCCTCTCCAGGCTCTCGCCCAGTTTCTCGGTCCCCGCGGATATTCCTCATTGGCATCATCACTGCCTATCGGGAATGAAGACGACAACGGCGAGTCTAGCAAGCCGGCGTCACGCACCACTCCCCCACTCAGGTGCTCAAGAATTTCAATGAGGTTCGATTCCTCCGGATCGAGCTTCCCTCCGGAGAGCTGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

82

Amino Acids

8.96

Weight (kDa)

9.18

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016945)

Species	Orthologous Gene IDs
malus_domestica	MD07G1192700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0143491
rosa_multiflora	Rmu_sc0005795.1_g000010
rosa_roxburghii	Rroxscaffold_4G00326350
rosa_samantha	Rh1AG171600 Rh2CG177900 Rh4CG356500 Rh5BG541500 Rh5CG564100 Rh6DG130700 Rh7AG226100 Rh7CG240400 Rh7CG519100 Rh7DG235000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AccII	CGCG	1 cut(s)	87
AccIII	TCCGGA	2 cut(s)	215, 232
AciI	CCGC	2 cut(s)	85, 87
AclWI	GGATC	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	192
AcyI	GRCGYC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	198
AjnI	CCWGG	1 cut(s)	57
AleI	CACNNNNGTG	1 cut(s)	181
AluBI	AGCT	2 cut(s)	225, 240
AluI	AGCT	2 cut(s)	225, 240
Alw21I	GWGCWC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	13
Aor13HI	TCCGGA	2 cut(s)	215, 232
ApoI	RAATTY	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	80
BbsI	GAAGAC	2 cut(s)	25, 135
Bbv12I	GWGCWC	1 cut(s)	188
BceAI	ACGGC	2 cut(s)	55, 154
BciT130I	CCWGG	1 cut(s)	59
BfaI	CTAG	1 cut(s)	147
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	80
BmeT110I	CYCGRG	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	59
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	113
BmuI	ACTGGG	1 cut(s)	64
BpiI	GAAGAC	2 cut(s)	25, 135
BplI	GAGNNNNNCTC	2 cut(s)	214, 246
BpmI	CTGGAG	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	85
BsaWI	WCCGGW	3 cut(s)	24, 215, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	70
BseAI	TCCGGA	2 cut(s)	215, 232
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	193
BseNI	ACTGG	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	13
BsiSI	CCGG	4 cut(s)	25, 155, 216, 233
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp13I	TCCGGA	2 cut(s)	215, 232
Bsp143I	GATC	1 cut(s)	218
BspACI	CCGC	2 cut(s)	85, 87
BspCNI	CTCAG	1 cut(s)	192
BspEI	TCCGGA	2 cut(s)	215, 232
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	82
BspPI	GGATC	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	70
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	1 cut(s)	218
BssNI	GRCGYC	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	152, 156
BstDEI	CTNAG	1 cut(s)	179
BstDSI	CCRYGG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	57
BstUI	CGCG	1 cut(s)	87
BstV2I	GAAGAC	2 cut(s)	25, 135
BtgI	CCRYGG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	110
Cac8I	GCNNGC	2 cut(s)	152, 156
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	80
Cfr42I	CCGCGG	1 cut(s)	88
CseI	GACGC	1 cut(s)	147
CviJI	RGCY	6 cut(s)	42, 52, 62, 154, 225, 240
CviKI_1	RGCY	6 cut(s)	42, 52, 62, 154, 225, 240
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	57
FaiI	YATR	1 cut(s)	247
FaqI	GGGAC	1 cut(s)	66
FauI	CCCGC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	244
GsuI	CTGGAG	1 cut(s)	41
HapII	CCGG	4 cut(s)	25, 155, 216, 233
HgaI	GACGC	1 cut(s)	147
HhaI	GCGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	3 cut(s)	16, 143, 209
HpaII	CCGG	4 cut(s)	25, 155, 216, 233
Hpy188III	TCNNGA	5 cut(s)	13, 121, 189, 216, 233
Hpy99I	CGWCG	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HpyF3I	CTNAG	1 cut(s)	179
Hsp92I	GRCGYC	1 cut(s)	158
HspAI	GCGC	1 cut(s)	4
Kpn2I	TCCGGA	2 cut(s)	215, 232
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
KspI	CCGCGG	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	218
LpnPI	CCDG	8 cut(s)	38, 44, 71, 83, 166, 168, 226, 229
LweI	GCATC	1 cut(s)	113
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	159
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MboII	GAAGA	2 cut(s)	25, 140
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	1 cut(s)	192
MlyI	GAGTC	2 cut(s)	25, 152
MnlI	CCTC	6 cut(s)	17, 63, 106, 195, 223, 240
MroI	TCCGGA	2 cut(s)	215, 232
MroNI	GCCGGC	1 cut(s)	154
MslI	CAYNNNNRTG	1 cut(s)	181
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	4 cut(s)	25, 155, 216, 233
MspR9I	CCNGG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	147
NaeI	GCCGGC	1 cut(s)	156
NdeII	GATC	1 cut(s)	218
NgoMIV	GCCGGC	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	159
OliI	CACNNNNGTG	1 cut(s)	181
PaeR7I	CTCGAG	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdiI	GCCGGC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	209
PleI	GAGTC	2 cut(s)	24, 151
PpsI	GAGTC	2 cut(s)	24, 151
Psp6I	CCWGG	1 cut(s)	57
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	181
SacII	CCGCGG	1 cut(s)	88
Sau3AI	GATC	1 cut(s)	218
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	2 cut(s)	25, 152
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	4 cut(s)	185, 206, 227, 242
SfaNI	GCATC	1 cut(s)	113
Sfr274I	CTCGAG	1 cut(s)	13
Sfr303I	CCGCGG	1 cut(s)	88
SgrBI	CCGCGG	1 cut(s)	88
SinI	GGWCC	1 cut(s)	80
SlaI	CTCGAG	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	181
SmlI	CTYRAG	2 cut(s)	13, 187
SmoI	CTYRAG	2 cut(s)	13, 187
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	2 cut(s)	85, 87
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	57
TaqI	TCGA	4 cut(s)	14, 36, 207, 221
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	209
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	159
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	80
XapI	RAATTY	1 cut(s)	192
XhoI	CTCGAG	1 cut(s)	13
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.