Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008321

Physical Location & Seq

Genomic Coordinates Forward (+)

79376801 .. 79377118

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCCTACAACTACAAGCAGCAGCACCAGAATTGTCCATCCATGGAAGTCTCCATTACCTTACCTCTTTGGCAGCTTAGCCGTAATACTGCTACTCATTTTTGTTGCATTGATCATCCTCGTCTGCTCGTACCGCGAGGGCTCTTCTGGATCATCAAGTGATCGAGATGAAGAGAAGCCGAAAAAGCCCAACACGAACAGTACAGTGTGCGAAGACGAGCCTAAGATTGTTGTCATAATAATGGCCGGAGAAGACCAGCCCACGCACTTGGCTACACCGGTCACCTCTGTCTGCTCTTGCTCTTGCGAGAAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0032879 GO:0032890 GO:0034762 GO:0034765 GO:0043269 GO:0044070 GO:0050789 GO:0051049 GO:0051952 GO:0051955 GO:0065007 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.35

Weight (kDa)

5.58

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30725
fragaria_vesca	FvH4_6g45940
malus_domestica	MD09G1078800.v1.1 MD17G1069100.v1.1
prunus_persica	Prupe.3G245400_v2.0.a1
pyrus_communis	pycom09g00560
rosa_chinensis	RchiOBHm_Chr2g0164151 RchiOBHm_Chr2g0164161
rosa_laevigata	RLG00000021439 RLG00000021440
rosa_multiflora	Rmu_sc0001427.1_g000018 Rmu_sc0001427.1_g000019
rosa_roxburghii	Rroxscaffold_2G00086750
rosa_rugosa	Rorug02G0506700 Rorug02G0506700
rosa_samantha	Rh2AG575000 Rh2AG575100 Rh2BG585600 Rh2BG585700 Rh2CG556400 Rh2CG556500 Rh2DG595200
rosa_wichuraiana	Rw2G047590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	135
AciI	CCGC	1 cut(s)	133
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	243
AfaI	GTAC	2 cut(s)	131, 202
AgeI	ACCGGT	1 cut(s)	277
AluBI	AGCT	1 cut(s)	75
AluI	AGCT	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	1 cut(s)	157
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	3 cut(s)	18, 21, 72
AsiGI	ACCGGT	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	143
BbsI	GAAGAC	2 cut(s)	219, 258
BbvI	GCAGC	3 cut(s)	30, 33, 84
BccI	CCATC	1 cut(s)	45
BceAI	ACGGC	1 cut(s)	65
BclI	TGATCA	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	54
BisI	GCNGC	3 cut(s)	19, 22, 73
BlpI	GCTNAGC	1 cut(s)	76
BlsI	GCNGC	3 cut(s)	20, 23, 74
BpiI	GAAGAC	2 cut(s)	219, 258
Bpu1102I	GCTNAGC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	41
BsaWI	WCCGGW	1 cut(s)	277
Bse118I	RCCGGY	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	2 cut(s)	37, 114
BseXI	GCAGC	3 cut(s)	30, 33, 84
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	245
BshTI	ACCGGT	1 cut(s)	277
BsiSI	CCGG	2 cut(s)	246, 278
BsmAI	GTCTC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	3 cut(s)	111, 149, 160
Bsp1720I	GCTNAGC	1 cut(s)	76
Bsp19I	CCATGG	1 cut(s)	41
BspACI	CCGC	1 cut(s)	133
BspANI	GGCC	1 cut(s)	245
BspFNI	CGCG	1 cut(s)	135
BspPI	GGATC	1 cut(s)	157
BspQI	GCTCTTC	1 cut(s)	148
BsrFI	RCCGGY	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	3 cut(s)	111, 149, 160
BssT1I	CCWWGG	1 cut(s)	41
Bst4CI	ACNGT	2 cut(s)	200, 205
Bst6I	CTCTTC	2 cut(s)	148, 165
BstDEI	CTNAG	2 cut(s)	76, 222
BstDSI	CCRYGG	1 cut(s)	41
BstEII	GGTNACC	1 cut(s)	280
BstF5I	GGATG	2 cut(s)	37, 114
BstFNI	CGCG	1 cut(s)	135
BstKTI	GATC	3 cut(s)	114, 152, 163
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	3 cut(s)	111, 149, 160
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 184
BstPI	GGTNACC	1 cut(s)	280
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	3 cut(s)	30, 33, 84
BstV2I	GAAGAC	2 cut(s)	219, 258
BstXI	CCANNNNNNTGG	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	2 cut(s)	37, 114
BtsIMutI	CAGTG	1 cut(s)	210
Cfr10I	RCCGGY	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	130, 201
CspAI	ACCGGT	1 cut(s)	277
CviAII	CATG	1 cut(s)	42
CviJI	RGCY	9 cut(s)	75, 80, 141, 178, 187, 220, 245, 259, 272
CviKI_1	RGCY	9 cut(s)	75, 80, 141, 178, 187, 220, 245, 259, 272
CviQI	GTAC	2 cut(s)	130, 201
DdeI	CTNAG	2 cut(s)	76, 222
DpnI	GATC	3 cut(s)	113, 151, 162
DpnII	GATC	3 cut(s)	111, 149, 160
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	2 cut(s)	148, 165
EarI	CTCTTC	2 cut(s)	148, 165
Eco130I	CCWWGG	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	143
Eco91I	GGTNACC	1 cut(s)	280
EcoO65I	GGTNACC	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	1 cut(s)	45
FaiI	YATR	2 cut(s)	43, 236
FatI	CATG	1 cut(s)	41
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	3 cut(s)	19, 22, 73
FokI	GGATG	2 cut(s)	24, 101
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	3 cut(s)	19, 22, 73
GluI	GCNGC	3 cut(s)	19, 22, 73
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	2 cut(s)	246, 278
Hin1II	CATG	1 cut(s)	45
HpaII	CCGG	2 cut(s)	246, 278
HphI	GGTGA	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	317
Hpy188III	TCNNGA	2 cut(s)	147, 164
HpyCH4III	ACNGT	2 cut(s)	200, 205
HpyCH4V	TGCA	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 184
HpyF3I	CTNAG	2 cut(s)	76, 222
Hsp92II	CATG	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	3 cut(s)	111, 149, 160
LguI	GCTCTTC	1 cut(s)	148
LpnPI	CCDG	5 cut(s)	40, 132, 259, 269, 291
Lsp1109I	GCAGC	3 cut(s)	30, 33, 84
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	3 cut(s)	113, 151, 162
MboI	GATC	3 cut(s)	111, 149, 160
MboII	GAAGA	4 cut(s)	135, 182, 224, 263
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	1 cut(s)	30
MnlI	CCTC	4 cut(s)	74, 128, 130, 295
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	2 cut(s)	246, 278
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	132, 184
NcoI	CCATGG	1 cut(s)	41
NdeII	GATC	3 cut(s)	111, 149, 160
NlaIII	CATG	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	148
PinAI	ACCGGT	1 cut(s)	277
PkrI	GCNGC	3 cut(s)	20, 23, 74
PspEI	GGTNACC	1 cut(s)	280
RsaI	GTAC	2 cut(s)	131, 202
RsaNI	GTAC	2 cut(s)	130, 201
RseI	CAYNNNNRTG	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	148
SatI	GCNGC	3 cut(s)	19, 22, 73
Sau3AI	GATC	3 cut(s)	111, 149, 160
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	4 cut(s)	61, 66, 77, 287
SmiMI	CAYNNNNRTG	1 cut(s)	239
Sse9I	AATT	1 cut(s)	30
SsiI	CCGC	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	200, 205
TaqI	TCGA	1 cut(s)	163
TasI	AATT	1 cut(s)	30
TatI	WGTACW	1 cut(s)	200
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	3 cut(s)	18, 21, 72
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.