Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014395

Physical Location & Seq

Genomic Coordinates Reverse (-)

145964 .. 146364

Gene Structure 401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGAAGGCAGAGGCGGAGTAGTAGGTGAAATACGGCGACTTAACATCATCTACTTCCTATGTAGTCTTGGCCGCATTGATCATCCCCATCTCATTCGTGTCCATCATCTTAACCGAAACGGCGTTTTTCTGCGAGACATCAAGAGGTGGCTTGCGGATTTACGAGGGAAGGATATGCCAGAGACCTTCACTTGGTCTTACAAGAGGTTCAAATCAATTTTATATATCTTCAATCTTCTTCTATCTTTTTCTTTTGAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF966

Protein Analysis

87

Amino Acids

10.41

Weight (kDa)

10.11

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SOK	PF06136	15 - 72	7.9e-14	SOSEKI protein DIX-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05577
fragaria_vesca	FvH4_2g11530
malus_domestica	MD07G1001300.v1.1 MD07G1001400.v1.1
prunus_persica	Prupe.2G001400_v2.0.a1 Prupe.2G001400_v2.0.a1
pyrus_communis	pycom07g00180
rosa_chinensis	RchiOBHm_Chr1g0313061
rosa_laevigata	RLG00000030824
rosa_multiflora	Rmu_sc0001606.1_g000003
rosa_roxburghii	Rroxscaffold_4G00332510
rosa_rugosa	RorugPtG0000700
rosa_samantha	Rh1AG000600 Rh1CG002200 Rh1CG004800 Rh1DG000300
rosa_wichuraiana	Rw0G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	15, 73, 155
AcoI	YGGCCR	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	211, 232
Alw26I	GTCTC	2 cut(s)	129, 176
AoxI	GGCC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	38
BccI	CCATC	2 cut(s)	96, 111
BceAI	ACGGC	2 cut(s)	50, 136
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	129, 176
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	2 cut(s)	129, 176
BsnI	GGCC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	3 cut(s)	15, 73, 155
BspANI	GGCC	1 cut(s)	72
BspTNI	GGTCTC	1 cut(s)	176
BssMI	GATC	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	2 cut(s)	129, 176
BstMBI	GATC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	153
CviJI	RGCY	2 cut(s)	72, 151
CviKI_1	RGCY	2 cut(s)	72, 151
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	70
EciI	GGCGGA	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	176
FaiI	YATR	4 cut(s)	61, 176, 223, 225
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	72
HphI	GGTGA	1 cut(s)	38
Hpy188III	TCNNGA	1 cut(s)	142
HpyAV	CCTTC	2 cut(s)	163, 196
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	79
LpnPI	CCDG	1 cut(s)	192
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	3 cut(s)	220, 227, 230
MluCI	AATT	2 cut(s)	216, 259
MnlI	CCTC	4 cut(s)	5, 138, 158, 198
MseI	TTAA	3 cut(s)	42, 111, 262
NdeII	GATC	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	74
SaqAI	TTAA	3 cut(s)	42, 111, 262
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	1 cut(s)	79
SetI	ASST	4 cut(s)	28, 149, 188, 209
SgeI	CNNG	9 cut(s)	80, 110, 146, 154, 164, 176, 191, 204, 214
Sse9I	AATT	2 cut(s)	216, 259
SsiI	CCGC	3 cut(s)	15, 73, 155
TasI	AATT	2 cut(s)	216, 259
TauI	GCSGC	1 cut(s)	75
Tru1I	TTAA	3 cut(s)	42, 111, 262
Tru9I	TTAA	3 cut(s)	42, 111, 262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.