Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008675

Physical Location & Seq

Genomic Coordinates Forward (+)

7350257 .. 7351527

Gene Structure 1271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGCCTGAGAGGAACACTTTCAGTTGGAACTGCATCATTACCGCATTTACGGAGTTGGGTTTTGTTGATGAGGCTTTGCAGAGTTTTAGGTCAATGCCGGAGCCTGACCAGTGCTCATGGAACTCGATGGTTTCGGGGTTTGCACAGCAGCATGGTCGCTTTGAGGATGCTTTGGAATATTTTGTTAACATTCATGGGGAGGATTTTGTTCTTAATGAATACACATTCGGTAGTGCTCTTAGTGCTTGTGCAGGTTTAAGAGCTGAAAATGGGTTTTTTGATTGCACGAGTGTGCGAAATGTTGTTTCTTGGAATAGTTTGATAACTTGTTACGAGCAAAATGGTCCAGCAAGCGAAGCCGTACAAGTGTTTGTGAGGATGATGGATTGTGGGTTTAAACCAGACGAGTTGACTTTAGCCAGTATGGTGAGTGCTTGTGCGAGCTTGTCCGCAGTGGAAGAAGGTCGGCAAATACATGCTTGTGTTATGAAATGTGATAAGTACAGGAATGATGTTGTATTATGCAATGCATTAGTTGATATGTATGCAAAATGCAACAGAATAAATGAGGCCAGAAGGGTTTCCGATGGGATGCCTATCAGAAATGTGGTCTCAGAAACTTCTATGAATGGAGAGAATGAAGAGGCCCTTGGACTCTTTCTCCTCCTGAAAAGAGAGTCTGTTTGGCCCACCCACTACACATTTACGAATCTACTCAATGCTTGTGCAAGTCTTGTTGATCTGCAGCTTGGCAGGCAAGCTCATTCACACATATTGAAGCATGGTTTTCAATTCCAGGTTGGTGAAGAGCCTGATATATTTGTTGGAAATTCTCTAATAGATATGTACATGAAATGTGGGTCTATTGAAGATGGCTGTCAGATGTTTAGAAATATGGTGGAAAGGGATCATGTCTCATGGAATGCTATGATTGTGGGACATGCGCAAAATGGTCATGGGACTGAAGCTCTTGAAATATTTAGAAAAATGCTGGTATCAGGTAAAATTGAGCAGAAAGATATGATAACTATATACTGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009451 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0023052 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

347

Amino Acids

39.07

Weight (kDa)

4.98

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	99 - 147	4.8e-10	PPR repeat family
PPR	PF01535	102 - 132	1.1e-06	PPR repeat
PPR	PF01535	305 - 334	3.8e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13600
fragaria_vesca	FvH4_7g02360 FvH4_7g02360
malus_domestica	MD02G1294800.v1.1 MD07G1031100.v1.1 MD07G1032100.v1.1
prunus_persica	Prupe.7G009700_v2.0.a1
pyrus_communis	pycom07g02270
rosa_chinensis	RchiOBHm_Chr1g0319691 RchiOBHm_Chr7g0218591
rosa_laevigata	RLG00000002327 RLG00000030463
rosa_multiflora	Rmu_sc0001301.1_g000024
rosa_roxburghii	Rroxscaffold_3G00240770
rosa_rugosa	Rorug01G0029400 Rorug07G0178600
rosa_samantha	Rh1BG038400 Rh7AG319700 Rh7BG311700 Rh7CG336600 Rh7DG318700
rosa_wichuraiana	Rw0G015750 Rw7G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	945
Acc36I	ACCTGC	1 cut(s)	242
AciI	CCGC	2 cut(s)	42, 450
AclWI	GGATC	1 cut(s)	915
AcsI	RAATTY	1 cut(s)	829
AcuI	CTGAAG	1 cut(s)	984
AfaI	GTAC	3 cut(s)	363, 503, 848
AgsI	TTSAA	4 cut(s)	778, 791, 869, 974
AjnI	CCWGG	1 cut(s)	795
AjuI	GAANNNNNNNTTGG	2 cut(s)	633, 665
AleI	CACNNNNGTG	1 cut(s)	290
AluBI	AGCT	5 cut(s)	263, 444, 748, 761, 968
AluI	AGCT	5 cut(s)	263, 444, 748, 761, 968
Alw21I	GWGCWC	2 cut(s)	116, 238
Alw26I	GTCTC	2 cut(s)	616, 919
AlwI	GGATC	1 cut(s)	915
AoxI	GGCC	3 cut(s)	570, 645, 686
ApeKI	GCWGC	2 cut(s)	148, 745
ApoI	RAATTY	1 cut(s)	829
Asp700I	GAANNNNTTC	2 cut(s)	17, 580
AspLEI	GCGC	1 cut(s)	946
AspS9I	GGNCC	3 cut(s)	344, 646, 687
AsuHPI	GGTGA	2 cut(s)	439, 815
AvaII	GGWCC	1 cut(s)	344
BauI	CACGAG	1 cut(s)	286
Bbv12I	GWGCWC	2 cut(s)	116, 238
BbvI	GCAGC	2 cut(s)	160, 757
BccI	CCATC	4 cut(s)	121, 376, 581, 866
BceAI	ACGGC	1 cut(s)	344
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	1 cut(s)	797
BcoDI	GTCTC	2 cut(s)	616, 919
BfmI	CTRYAG	1 cut(s)	743
BfuAI	ACCTGC	1 cut(s)	242
BisI	GCNGC	2 cut(s)	149, 746
BlsI	GCNGC	2 cut(s)	150, 747
Bme1390I	CCNGG	1 cut(s)	797
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	344, 646, 687
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	797
BmsI	GCATC	3 cut(s)	42, 157, 582
BsaBI	GATNNNNATC	1 cut(s)	596
BsaI	GGTCTC	1 cut(s)	616
BsaJI	CCNNGG	1 cut(s)	649
BsaXI	ACNNNNNCTCC	2 cut(s)	645, 675
Bse1I	ACTGG	2 cut(s)	109, 420
Bse3DI	GCAATG	1 cut(s)	532
Bse8I	GATNNNNATC	1 cut(s)	596
BseBI	CCWGG	1 cut(s)	797
BseDI	CCNNGG	1 cut(s)	649
BseGI	GGATG	3 cut(s)	172, 384, 597
BseJI	GATNNNNATC	1 cut(s)	596
BseMI	GCAATG	1 cut(s)	532
BseMII	CTCAG	1 cut(s)	627
BseNI	ACTGG	2 cut(s)	109, 420
BseRI	GAGGAG	1 cut(s)	653
BseXI	GCAGC	2 cut(s)	160, 757
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	3 cut(s)	572, 647, 688
BsiHKAI	GWGCWC	2 cut(s)	116, 238
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	2 cut(s)	951, 973
BsmAI	GTCTC	2 cut(s)	616, 919
BsmFI	GGGAC	2 cut(s)	951, 973
BsmI	GAATGC	1 cut(s)	928
BsnI	GGCC	3 cut(s)	572, 647, 688
Bso31I	GGTCTC	1 cut(s)	616
Bsp1286I	GDGCHC	2 cut(s)	116, 238
Bsp1407I	TGTACA	1 cut(s)	846
Bsp143I	GATC	2 cut(s)	739, 907
BspACI	CCGC	2 cut(s)	42, 450
BspANI	GGCC	3 cut(s)	572, 647, 688
BspCNI	CTCAG	1 cut(s)	626
BspLI	GGNNCC	1 cut(s)	102
BspMAI	CTGCAG	1 cut(s)	747
BspMI	ACCTGC	1 cut(s)	242
BspPI	GGATC	1 cut(s)	915
BspQI	GCTCTTC	1 cut(s)	801
BspTNI	GGTCTC	1 cut(s)	616
BsrDI	GCAATG	1 cut(s)	532
BsrGI	TGTACA	1 cut(s)	846
BsrI	ACTGG	2 cut(s)	109, 420
BssECI	CCNNGG	1 cut(s)	649
BssMI	GATC	2 cut(s)	739, 907
BssSI	CACGAG	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	649
Bst2BI	CACGAG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	797
Bst4CI	ACNGT	1 cut(s)	1037
Bst6I	CTCTTC	2 cut(s)	636, 801
BstAUI	TGTACA	1 cut(s)	846
BstC8I	GCNNGC	4 cut(s)	352, 442, 755, 759
BstDEI	CTNAG	3 cut(s)	6, 239, 613
BstF5I	GGATG	3 cut(s)	172, 384, 597
BstHHI	GCGC	1 cut(s)	946
BstKTI	GATC	2 cut(s)	742, 910
BstMAI	GTCTC	2 cut(s)	616, 919
BstMBI	GATC	2 cut(s)	739, 907
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 356, 754
BstNI	CCWGG	1 cut(s)	797
BstNSI	RCATGY	2 cut(s)	479, 944
BstSCI	CCNGG	1 cut(s)	795
BstSFI	CTRYAG	1 cut(s)	743
BstV1I	GCAGC	2 cut(s)	160, 757
BsuRI	GGCC	3 cut(s)	572, 647, 688
BtsCI	GGATG	3 cut(s)	172, 384, 597
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	2 cut(s)	116, 459
BveI	ACCTGC	1 cut(s)	242
Cac8I	GCNNGC	4 cut(s)	352, 442, 755, 759
CfoI	GCGC	1 cut(s)	946
Cfr13I	GGNCC	3 cut(s)	344, 646, 687
Csp6I	GTAC	3 cut(s)	362, 502, 847
CviQI	GTAC	3 cut(s)	362, 502, 847
DdeI	CTNAG	3 cut(s)	6, 239, 613
DpnI	GATC	2 cut(s)	741, 909
DpnII	GATC	2 cut(s)	739, 907
DraI	TTTAAA	1 cut(s)	397
Eam1104I	CTCTTC	2 cut(s)	636, 801
EarI	CTCTTC	2 cut(s)	636, 801
Eco130I	CCWWGG	1 cut(s)	649
Eco31I	GGTCTC	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	984
EcoO109I	RGGNCCY	1 cut(s)	646
EcoRII	CCWGG	1 cut(s)	795
EcoT14I	CCWWGG	1 cut(s)	649
EcoT22I	ATGCAT	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	649
FalI	AAGNNNNNCTT	2 cut(s)	633, 665
FaqI	GGGAC	2 cut(s)	951, 973
Fnu4HI	GCNGC	2 cut(s)	149, 746
FokI	GGATG	3 cut(s)	179, 391, 604
Fsp4HI	GCNGC	2 cut(s)	149, 746
FspI	TGCGCA	1 cut(s)	945
GlaI	GCGC	1 cut(s)	945
GluI	GCNGC	2 cut(s)	149, 746
HaeIII	GGCC	3 cut(s)	572, 647, 688
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	1 cut(s)	946
Hin6I	GCGC	1 cut(s)	944
HinP1I	GCGC	1 cut(s)	944
HincII	GTYRAC	2 cut(s)	187, 411
HindII	GTYRAC	2 cut(s)	187, 411
HinfI	GANTC	3 cut(s)	654, 677, 709
HpaI	GTTAAC	1 cut(s)	187
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	2 cut(s)	439, 815
Hpy166II	GTNNAC	2 cut(s)	187, 411
Hpy188I	TCNGA	4 cut(s)	586, 602, 616, 882
Hpy188III	TCNNGA	2 cut(s)	667, 971
Hpy8I	GTNNAC	2 cut(s)	187, 411
HpyAV	CCTTC	2 cut(s)	455, 570
HpyCH4III	ACNGT	1 cut(s)	1037
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 356, 754
HpyF3I	CTNAG	3 cut(s)	6, 239, 613
HspAI	GCGC	1 cut(s)	944
KspAI	GTTAAC	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	739, 907
LguI	GCTCTTC	1 cut(s)	801
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	2 cut(s)	160, 757
LweI	GCATC	3 cut(s)	42, 157, 582
MaeIII	GTNAC	2 cut(s)	329, 1037
MalI	GATC	2 cut(s)	741, 909
MboI	GATC	2 cut(s)	739, 907
MboII	GAAGA	4 cut(s)	470, 653, 818, 881
MhlI	GDGCHC	2 cut(s)	116, 238
MluCI	AATT	3 cut(s)	791, 829, 1005
MlyI	GAGTC	2 cut(s)	648, 686
MmeI	TCCRAC	2 cut(s)	5, 805
MnlI	CCTC	8 cut(s)	3, 64, 157, 193, 369, 562, 637, 674
Mph1103I	ATGCAT	1 cut(s)	532
MroXI	GAANNNNTTC	2 cut(s)	17, 580
MseI	TTAA	4 cut(s)	186, 213, 257, 396
MslI	CAYNNNNRTG	2 cut(s)	290, 480
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	797
MssI	GTTTAAAC	1 cut(s)	397
Mva1269I	GAATGC	1 cut(s)	928
MvaI	CCWGG	1 cut(s)	797
MwoI	GCNNNNNNNGC	3 cut(s)	242, 356, 754
NdeII	GATC	2 cut(s)	739, 907
NlaIV	GGNNCC	1 cut(s)	102
NsbI	TGCGCA	1 cut(s)	945
NsiI	ATGCAT	1 cut(s)	532
NspI	RCATGY	2 cut(s)	479, 944
OliI	CACNNNNGTG	1 cut(s)	290
PciSI	GCTCTTC	1 cut(s)	801
PctI	GAATGC	1 cut(s)	928
PdmI	GAANNNNTTC	2 cut(s)	17, 580
PfeI	GAWTC	1 cut(s)	709
PkrI	GCNGC	2 cut(s)	150, 747
PleI	GAGTC	2 cut(s)	648, 685
PmeI	GTTTAAAC	1 cut(s)	397
PpsI	GAGTC	2 cut(s)	648, 685
Psp6I	CCWGG	1 cut(s)	795
PspGI	CCWGG	1 cut(s)	795
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	3 cut(s)	344, 646, 687
PstI	CTGCAG	1 cut(s)	747
RsaI	GTAC	3 cut(s)	363, 503, 848
RsaNI	GTAC	3 cut(s)	362, 502, 847
RseI	CAYNNNNRTG	2 cut(s)	290, 480
SapI	GCTCTTC	1 cut(s)	801
SaqAI	TTAA	4 cut(s)	186, 213, 257, 396
SatI	GCNGC	2 cut(s)	149, 746
Sau3AI	GATC	2 cut(s)	739, 907
Sau96I	GGNCC	3 cut(s)	344, 646, 687
SchI	GAGTC	2 cut(s)	648, 686
ScrFI	CCNGG	1 cut(s)	797
SduI	GDGCHC	2 cut(s)	116, 238
SfaNI	GCATC	3 cut(s)	42, 157, 582
SfcI	CTRYAG	1 cut(s)	743
SinI	GGWCC	1 cut(s)	344
SmiMI	CAYNNNNRTG	2 cut(s)	290, 480
Sse9I	AATT	3 cut(s)	791, 829, 1005
SsiI	CCGC	2 cut(s)	42, 450
SspI	AATATT	2 cut(s)	179, 978
StyD4I	CCNGG	1 cut(s)	795
StyI	CCWWGG	1 cut(s)	649
TaaI	ACNGT	1 cut(s)	1037
TaqI	TCGA	1 cut(s)	125
TasI	AATT	3 cut(s)	791, 829, 1005
TatI	WGTACW	2 cut(s)	501, 846
TfiI	GAWTC	1 cut(s)	709
Tru1I	TTAA	4 cut(s)	186, 213, 257, 396
Tru9I	TTAA	4 cut(s)	186, 213, 257, 396
TscAI	CASTG	2 cut(s)	116, 459
TseI	GCWGC	2 cut(s)	148, 745
TspDTI	ATGAA	6 cut(s)	182, 231, 503, 641, 654, 866
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	2 cut(s)	116, 459
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	829
XceI	RCATGY	2 cut(s)	479, 944
XmnI	GAANNNNTTC	2 cut(s)	17, 580
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.