RchiOBHm_Chr1g0332071

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016741
Physical Location & Seq
Forward (+)
23211466 .. 23212898
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1101 bp
ATGAAGGGAATGAAAGGAAAACTAGTGAAGAGGTTGAAATCAATCCCAGGAGTCCTTCAGGTGAAGCCACAAGATCGAGTTCTTCAGGTAAGCGCATCGGATGGGTATGTGGAAAACCTTCCAAACATCTCAGTTGTCAAATTCCACAAGGAAGAAACAGAGCAGGACAAGCTCAACTGCAGCAGTGTGAGAGAGCAGCAACAACCTGATATTATTGACGTCGATGAGCTTATGAGAGACCTCCTCACAGATTCTGACGATGACGTCGCCGACGACGACGACGACAAAGAGAACATGACGCCAAGAATGAAGGCAAAGGACCCAGTTGCTTCTAAGGAGTCTAAATTGAAGCAGAGTAAAGCGACTTTCCCAGATTCACAAGCACTACCGGTACTAGAGTCGGAAAGCCGTAATCAAACACCTCTATCGGAGATTGACATCTCGTCTTTCCGGCGACCGGACTTAGATTCCGGTACCCTCTTCGACCCGGACCTACTCGCCGCCTTTCGGCAAGCCGTTATTGAGTACATGAAATTGAGTGAAGCAGAGAGGAAGTCAATAACAGAGATTCAAAATATTGAAAACAGTGAAACAGAGGCGGAGGCAGAGGCGGAGCCGGACCCTCTATTAGGCTTCGAAGAGAAATGTCCACCTGGGAGCTTGGAGTCGGTAATTCTCTACACGACAACCCTTCGAGGGATACGAAAGACCTTCGACGATTGCAACAGCATCCGATTTCTGTTAGAGAGCTTTCGGGTTGTGTATTTCGAGCGTGATGTATCGATGCACATGGAATTTAGACAAGAGCTGTGGAAGATTTTGGATTGCAAATCGGTTCCTCCTAAGCTTTTCATCAAGGGGAGATACATTGGGGGAGCAGAGGAGGTTTTGACGCTTCACGAGCAAGGAAAGCTGCGGCCTCTCCTTGCAGGAGTGCCGTTGGATCAATCAGATGGACCGTGTCAAGGTTGCGCTGGAGTTCGGTTTGTGGTTTGTTTCAAATGCCACGGAAGTCACAAGATCATTGCCCAAGAGGGAGAGTCTAATGTGTGCCCGCAGTGTAACGAAAATGGGTTGATTATATGCCCATATTGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

366

Amino Acids

41.12

Weight (kDa)

4.87

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 224 - 290 1.3e-10 Glutaredoxin
GRXCR1-2_C PF23733 321 - 366 1.5e-16 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016741)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27780 FvH4_1g27790 FvH4_7g05400
malus_domestica MD02G1258300.v1.1 MD07G1062500.v1.1
prunus_persica Prupe.2G073600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0332071
rosa_laevigata RLG00000029694
rosa_roxburghii Rroxscaffold_4G00318400
rosa_rugosa Rorug01G0098200
rosa_samantha Rh1AG122100 Rh1BG093500 Rh1CG116700
rosa_wichuraiana Rw1G009950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AatII GACGTC 2 cut(s) 222, 267
Acc65I GGTACC 1 cut(s) 473
AccB1I GGYRCC 1 cut(s) 473
AciI CCGC 5 cut(s) 501, 599, 611, 916, 1055
AclWI GGATC 1 cut(s) 951
AcsI RAATTY 2 cut(s) 140, 794
AcuI CTGAAG 2 cut(s) 41, 68
AcyI GRCGYC 3 cut(s) 219, 264, 299
AfaI GTAC 3 cut(s) 393, 475, 527
AfiI CCNNNNNNNGG 5 cut(s) 457, 507, 629, 696, 965
AgeI ACCGGT 1 cut(s) 388
AgsI TTSAA 5 cut(s) 37, 349, 572, 581, 1000
AhdI GACNNNNNGTC 1 cut(s) 442
AhlI ACTAGT 1 cut(s) 22
AjnI CCWGG 2 cut(s) 46, 652
AluBI AGCT 7 cut(s) 172, 229, 660, 750, 808, 847, 913
AluI AGCT 7 cut(s) 172, 229, 660, 750, 808, 847, 913
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 1 cut(s) 951
AlwNI CAGNNNCTG 1 cut(s) 254
AoxI GGCC 1 cut(s) 917
ApeKI GCWGC 3 cut(s) 180, 196, 913
ApoI RAATTY 2 cut(s) 140, 794
AsiGI ACCGGT 1 cut(s) 388
Asp700I GAANNNNTTC 1 cut(s) 117
Asp718I GGTACC 1 cut(s) 473
AspLEI GCGC 2 cut(s) 95, 974
AspS9I GGNCC 4 cut(s) 319, 490, 619, 956
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 1 cut(s) 73
AsuII TTCGAA 1 cut(s) 636
AvaII GGWCC 4 cut(s) 319, 490, 619, 956
BaeGI GKGCMC 1 cut(s) 1055
BaeI ACNNNNGTAYC 2 cut(s) 383, 416
BanI GGYRCC 1 cut(s) 473
BauI CACGAG 1 cut(s) 899
BbvI GCAGC 3 cut(s) 192, 208, 900
BccI CCATC 2 cut(s) 95, 947
BceAI ACGGC 3 cut(s) 393, 500, 922
BciT130I CCWGG 2 cut(s) 48, 654
BciVI GTATCC 1 cut(s) 693
BcnI CCSGG 1 cut(s) 488
BcoDI GTCTC 1 cut(s) 231
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 2 cut(s) 23, 395
BfmI CTRYAG 1 cut(s) 178
BfuI GTATCC 1 cut(s) 693
BisI GCNGC 5 cut(s) 181, 197, 501, 914, 917
BlsI GCNGC 5 cut(s) 182, 198, 502, 915, 918
Bme1390I CCNGG 3 cut(s) 48, 488, 654
Bme18I GGWCC 4 cut(s) 319, 490, 619, 956
BmeRI GACNNNNNGTC 1 cut(s) 442
BmgT120I GGNCC 4 cut(s) 319, 490, 619, 956
BmiI GGNNCC 5 cut(s) 321, 475, 615, 621, 837
BmrFI CCNGG 3 cut(s) 48, 488, 654
BmrI ACTGGG 1 cut(s) 317
BmsI GCATC 3 cut(s) 104, 738, 774
BmuI ACTGGG 1 cut(s) 317
BplI GAGNNNNNCTC 2 cut(s) 228, 260
BpmI CTGGAG 1 cut(s) 996
Bpu10I CCTNAGC 1 cut(s) 843
Bpu14I TTCGAA 1 cut(s) 636
BpuMI CCSGG 1 cut(s) 488
Bsa29I ATCGAT 1 cut(s) 782
BsaBI GATNNNNATC 1 cut(s) 437
BsaHI GRCGYC 3 cut(s) 219, 264, 299
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 3 cut(s) 46, 653, 1006
BsaWI WCCGGW 3 cut(s) 388, 457, 470
Bsc4I CCNNNNNNNGG 5 cut(s) 457, 507, 629, 696, 965
Bse118I RCCGGY 1 cut(s) 388
Bse1I ACTGG 1 cut(s) 323
Bse3DI GCAATG 1 cut(s) 1023
Bse8I GATNNNNATC 1 cut(s) 437
BseBI CCWGG 2 cut(s) 48, 654
BseCI ATCGAT 1 cut(s) 782
BseDI CCNNGG 3 cut(s) 46, 653, 1006
BseGI GGATG 2 cut(s) 106, 729
BseJI GATNNNNATC 1 cut(s) 437
BseLI CCNNNNNNNGG 5 cut(s) 457, 507, 629, 696, 965
BseMI GCAATG 1 cut(s) 1023
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 323
BseRI GAGGAG 2 cut(s) 233, 896
BseSI GKGCMC 1 cut(s) 1055
BseXI GCAGC 3 cut(s) 192, 208, 900
Bsh1285I CGRYCG 1 cut(s) 458
BshFI GGCC 1 cut(s) 919
BshNI GGYRCC 1 cut(s) 473
BshTI ACCGGT 1 cut(s) 388
BshVI ATCGAT 1 cut(s) 782
BsiEI CGRYCG 1 cut(s) 458
BsiSI CCGG 6 cut(s) 389, 451, 458, 471, 488, 617
BslI CCNNNNNNNGG 5 cut(s) 457, 507, 629, 696, 965
BsmAI GTCTC 1 cut(s) 231
BsnI GGCC 1 cut(s) 919
Bso31I GGTCTC 1 cut(s) 231
Bsp119I TTCGAA 1 cut(s) 636
Bsp1286I GDGCHC 1 cut(s) 1055
Bsp143I GATC 3 cut(s) 73, 943, 1020
BspACI CCGC 5 cut(s) 501, 599, 611, 916, 1055
BspANI GGCC 1 cut(s) 919
BspCNI CTCAG 1 cut(s) 143
BspDI ATCGAT 1 cut(s) 782
BspLI GGNNCC 5 cut(s) 321, 475, 615, 621, 837
BspMAI CTGCAG 1 cut(s) 182
BspPI GGATC 1 cut(s) 951
BspT104I TTCGAA 1 cut(s) 636
BspT107I GGYRCC 1 cut(s) 473
BspTNI GGTCTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 1023
BsrFI RCCGGY 1 cut(s) 388
BsrI ACTGG 1 cut(s) 323
BssAI RCCGGY 1 cut(s) 388
BssECI CCNNGG 3 cut(s) 46, 653, 1006
BssMI GATC 3 cut(s) 73, 943, 1020
BssNI GRCGYC 3 cut(s) 219, 264, 299
BssSI CACGAG 1 cut(s) 899
Bst2BI CACGAG 1 cut(s) 899
Bst2UI CCWGG 2 cut(s) 48, 654
Bst4CI ACNGT 2 cut(s) 587, 960
Bst6I CTCTTC 3 cut(s) 23, 485, 633
BstACI GRCGYC 3 cut(s) 219, 264, 299
BstBI TTCGAA 1 cut(s) 636
BstC8I GCNNGC 2 cut(s) 513, 1055
BstDEI CTNAG 4 cut(s) 130, 333, 463, 843
BstDSI CCRYGG 1 cut(s) 1006
BstENI CCTNNNNNAGG 1 cut(s) 627
BstF5I GGATG 2 cut(s) 106, 729
BstHHI GCGC 2 cut(s) 95, 974
BstKTI GATC 3 cut(s) 76, 946, 1023
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 3 cut(s) 73, 943, 1020
BstMCI CGRYCG 1 cut(s) 458
BstMWI GCNNNNNNNGC 3 cut(s) 169, 901, 910
BstNI CCWGG 2 cut(s) 48, 654
BstSCI CCNGG 3 cut(s) 46, 486, 652
BstSFI CTRYAG 1 cut(s) 178
BstSLI GKGCMC 1 cut(s) 1055
BstV1I GCAGC 3 cut(s) 192, 208, 900
Bsu15I ATCGAT 1 cut(s) 782
BsuI GTATCC 1 cut(s) 693
BsuRI GGCC 1 cut(s) 919
BsuTUI ATCGAT 1 cut(s) 782
BtgI CCRYGG 1 cut(s) 1006
BtsCI GGATG 2 cut(s) 106, 729
BtsI GCAGTG 2 cut(s) 190, 1064
BtsIMutI CAGTG 3 cut(s) 190, 592, 1064
Cac8I GCNNGC 2 cut(s) 513, 1055
CaiI CAGNNNCTG 1 cut(s) 254
CfoI GCGC 2 cut(s) 95, 974
Cfr10I RCCGGY 1 cut(s) 388
Cfr13I GGNCC 4 cut(s) 319, 490, 619, 956
ClaI ATCGAT 1 cut(s) 782
CseI GACGC 2 cut(s) 307, 901
Csp6I GTAC 3 cut(s) 392, 474, 526
CspAI ACCGGT 1 cut(s) 388
CspCI CAANNNNNGTGG 2 cut(s) 791, 826
CviAII CATG 3 cut(s) 295, 529, 790
CviQI GTAC 3 cut(s) 392, 474, 526
DdeI CTNAG 4 cut(s) 130, 333, 463, 843
DpnI GATC 3 cut(s) 75, 945, 1022
DpnII GATC 3 cut(s) 73, 943, 1020
DrdI GACNNNNNNGTC 1 cut(s) 263
DriI GACNNNNNGTC 1 cut(s) 442
DseDI GACNNNNNNGTC 1 cut(s) 263
Eam1104I CTCTTC 3 cut(s) 23, 485, 633
Eam1105I GACNNNNNGTC 1 cut(s) 442
EarI CTCTTC 3 cut(s) 23, 485, 633
EciI GGCGGA 2 cut(s) 614, 626
Eco31I GGTCTC 1 cut(s) 231
Eco47I GGWCC 4 cut(s) 319, 490, 619, 956
Eco57I CTGAAG 2 cut(s) 41, 68
EcoNI CCTNNNNNAGG 1 cut(s) 627
EcoO109I RGGNCCY 1 cut(s) 319
EcoRII CCWGG 2 cut(s) 46, 652
FaeI CATG 3 cut(s) 298, 532, 793
FaiI YATR 8 cut(s) 108, 233, 296, 530, 791, 1082, 1084, 1090
FatI CATG 3 cut(s) 294, 528, 789
FauI CCCGC 1 cut(s) 1062
Fnu4HI GCNGC 5 cut(s) 181, 197, 501, 914, 917
FokI GGATG 2 cut(s) 113, 716
Fsp4HI GCNGC 5 cut(s) 181, 197, 501, 914, 917
FspBI CTAG 2 cut(s) 23, 395
GlaI GCGC 2 cut(s) 94, 973
GluI GCNGC 5 cut(s) 181, 197, 501, 914, 917
GsuI CTGGAG 1 cut(s) 996
HaeIII GGCC 1 cut(s) 919
HapII CCGG 6 cut(s) 389, 451, 458, 471, 488, 617
HgaI GACGC 2 cut(s) 307, 901
HhaI GCGC 2 cut(s) 95, 974
Hin1I GRCGYC 3 cut(s) 219, 264, 299
Hin1II CATG 3 cut(s) 298, 532, 793
Hin6I GCGC 2 cut(s) 93, 972
HinP1I GCGC 2 cut(s) 93, 972
HindIII AAGCTT 1 cut(s) 845
HinfI GANTC 9 cut(s) 51, 251, 338, 374, 398, 467, 568, 665, 1040
HpaII CCGG 6 cut(s) 389, 451, 458, 471, 488, 617
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 650
Hpy188I TCNGA 6 cut(s) 100, 256, 403, 430, 734, 952
Hpy188III TCNNGA 1 cut(s) 899
Hpy8I GTNNAC 1 cut(s) 650
Hpy99I CGWCG 7 cut(s) 224, 269, 275, 278, 281, 284, 719
HpyAV CCTTC 5 cut(s) 65, 128, 304, 701, 721
HpyCH4III ACNGT 2 cut(s) 587, 960
HpyCH4IV ACGT 2 cut(s) 219, 264
HpyCH4V TGCA 5 cut(s) 180, 723, 787, 828, 929
HpyF10VI GCNNNNNNNGC 3 cut(s) 169, 901, 910
HpyF3I CTNAG 4 cut(s) 130, 333, 463, 843
HpySE526I ACGT 2 cut(s) 219, 264
Hsp92I GRCGYC 3 cut(s) 219, 264, 299
Hsp92II CATG 3 cut(s) 298, 532, 793
HspAI GCGC 2 cut(s) 93, 972
KpnI GGTACC 1 cut(s) 477
Kzo9I GATC 3 cut(s) 73, 943, 1020
LmnI GCTCC 3 cut(s) 613, 657, 875
Lsp1109I GCAGC 3 cut(s) 192, 208, 900
LweI GCATC 3 cut(s) 104, 738, 774
MaeI CTAG 2 cut(s) 23, 395
MaeII ACGT 2 cut(s) 219, 264
MaeIII GTNAC 2 cut(s) 1013, 1061
MalI GATC 3 cut(s) 75, 945, 1022
MboI GATC 3 cut(s) 73, 943, 1020
MboII GAAGA 6 cut(s) 40, 74, 164, 472, 650, 826
MhlI GDGCHC 1 cut(s) 1055
MluCI AATT 5 cut(s) 140, 344, 533, 672, 794
MlyI GAGTC 5 cut(s) 60, 347, 407, 674, 1049
MmeI TCCRAC 2 cut(s) 381, 921
MroXI GAANNNNTTC 1 cut(s) 117
MspI CCGG 6 cut(s) 389, 451, 458, 471, 488, 617
MspR9I CCNGG 3 cut(s) 48, 488, 654
MvaI CCWGG 2 cut(s) 48, 654
MwoI GCNNNNNNNGC 3 cut(s) 169, 901, 910
NciI CCSGG 1 cut(s) 488
NdeII GATC 3 cut(s) 73, 943, 1020
NlaIII CATG 3 cut(s) 298, 532, 793
NlaIV GGNNCC 5 cut(s) 321, 475, 615, 621, 837
NmuCI GTSAC 1 cut(s) 1013
NspV TTCGAA 1 cut(s) 636
PcsI WCGNNNNNNNCGW 4 cut(s) 270, 273, 279, 700
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 4 cut(s) 251, 374, 467, 568
PflFI GACNNNGTC 1 cut(s) 960
PinAI ACCGGT 1 cut(s) 388
PkrI GCNGC 5 cut(s) 182, 198, 502, 915, 918
PleI GAGTC 5 cut(s) 59, 346, 406, 673, 1048
PpsI GAGTC 5 cut(s) 59, 346, 406, 673, 1048
PpuMI RGGWCCY 1 cut(s) 319
Psp5II RGGWCCY 1 cut(s) 319
Psp6I CCWGG 2 cut(s) 46, 652
PspGI CCWGG 2 cut(s) 46, 652
PspN4I GGNNCC 5 cut(s) 321, 475, 615, 621, 837
PspPI GGNCC 4 cut(s) 319, 490, 619, 956
PspPPI RGGWCCY 1 cut(s) 319
PstI CTGCAG 1 cut(s) 182
PstNI CAGNNNCTG 1 cut(s) 254
PsyI GACNNNGTC 1 cut(s) 960
RsaI GTAC 3 cut(s) 393, 475, 527
RsaNI GTAC 3 cut(s) 392, 474, 526
SatI GCNGC 5 cut(s) 181, 197, 501, 914, 917
Sau3AI GATC 3 cut(s) 73, 943, 1020
Sau96I GGNCC 4 cut(s) 319, 490, 619, 956
SchI GAGTC 5 cut(s) 60, 347, 407, 674, 1049
ScrFI CCNGG 3 cut(s) 48, 488, 654
SduI GDGCHC 1 cut(s) 1055
SfaNI GCATC 3 cut(s) 104, 738, 774
SfcI CTRYAG 1 cut(s) 178
SfuI TTCGAA 1 cut(s) 636
SinI GGWCC 4 cut(s) 319, 490, 619, 956
SpeI ACTAGT 1 cut(s) 22
Sse9I AATT 5 cut(s) 140, 344, 533, 672, 794
SsiI CCGC 5 cut(s) 501, 599, 611, 916, 1055
SspI AATATT 1 cut(s) 577
SspMI CTAG 2 cut(s) 23, 395
StyD4I CCNGG 3 cut(s) 46, 486, 652
TaaI ACNGT 2 cut(s) 587, 960
TaiI ACGT 2 cut(s) 222, 267
TaqI TCGA 8 cut(s) 76, 222, 483, 636, 694, 714, 768, 782
TasI AATT 5 cut(s) 140, 344, 533, 672, 794
TatI WGTACW 1 cut(s) 525
TauI GCSGC 2 cut(s) 503, 919
TfiI GAWTC 4 cut(s) 251, 374, 467, 568
TscAI CASTG 3 cut(s) 190, 592, 1064
TseFI GTSAC 1 cut(s) 1013
TseI GCWGC 3 cut(s) 180, 196, 913
Tsp45I GTSAC 1 cut(s) 1013
TspDTI ATGAA 5 cut(s) 17, 26, 323, 545, 841
TspGWI ACGGA 1 cut(s) 1023
TspRI CASTG 3 cut(s) 190, 592, 1064
Tth111I GACNNNGTC 1 cut(s) 960
VpaK11BI GGWCC 4 cut(s) 319, 490, 619, 956
XagI CCTNNNNNAGG 1 cut(s) 627
XapI RAATTY 2 cut(s) 140, 794
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 2 cut(s) 23, 395
ZraI GACGTC 2 cut(s) 220, 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.