RchiOBHm_Chr1g0332191

5'-nucleotidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002535
Physical Location & Seq
Forward (+)
23286208 .. 23291884
5677 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1014 bp
ATGAGTAATCGCCTCCTCTTCGTTGGCACCACCATTTGCTCTAATCGCTGCTTCATCCCACACCACTTCACTTCCAGGAGCTGCTTTTGTAGTGGTACCTTGAGAAATCAGACTAACATGGAATCCGATGAGGTTGTGGTGGTGGCTCACCCTCACCTTTTGGATACCAAAATTGCTGCTATTCGGAATGCGGGTCCCCCCAAACTCCAGGTTATAGCAGATTTTGATGCCACACTCACAAAGTACAGAGTGAATGGTTCTCGGGGACAAAGCAGTCATGGCCTTTTGCAACAGGAGAATCCTGAATATAATAACAAAAGGCGGGAGCTATTCGAATACTATCATCCATTAGAGTTCTCGCCAGCTATTCCAATTGAACAAAAAACTAAGCTTATGGAGGAATGGTGGGGAAAGACTCATTCTCTTTTGATTGAGGGAGGCCTTACCTATGATGGGATAAGGCAATCCGTTGCTGATTCCACAATTGCTTTTAGGGAGGGTGTTGTTGAATTATTTGAGTTTTTAGAGAAAAGAGACATTCCTGTTCTTATATTTTCAGCAGGACTTGCAGATATCATAGAGGAGGTCCTGAGGCAGAAAGTTCACAGATTGTTTAAAAATGTGAAGATCGTCTCCAATAGGATGGTATTTGATGATAACAGCCACCTTGTATCGTTTAAAGGGAAGACGATTCATAGTCTAAATAAAAATGAGCACGCTCTTGATATGGCTGCTCCACTTCATGAGCAATTAGGTGATTTAGATGGGCCAACTTATGAGAATGCGTCAGTCAAGACAAGAAGAAATGTCATTCTTCTGGGCGATCATATTGGTGACCTGCGAATGTCTGATGGTTTGAACTATGAGAATAGAATTTCCGTGGGATTTCTGAATGACAATGTTGAGAATTCTATTGATAGCTACCGCGAAGCCTTTGACGTTGTTTACCTGAATGATGCACCCATGTGGGGAGTAGTAAAGCTTGTTTCACAACTATGTCCTGGAGGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
UMPH-1

Protein Analysis

337

Amino Acids

38.1

Weight (kDa)

5.91

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UMPH-1 PF05822 78 - 332 7.7e-92 Pyrimidine 5'-nucleotidase (UMPH-1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 846
Acc65I GGTACC 1 cut(s) 95
AccB1I GGYRCC 2 cut(s) 26, 95
AccII CGCG 1 cut(s) 927
AciI CCGC 3 cut(s) 191, 322, 925
AcsI RAATTY 2 cut(s) 873, 907
AfaI GTAC 2 cut(s) 97, 245
AfiI CCNNNNNNNGG 2 cut(s) 453, 968
AgsI TTSAA 3 cut(s) 377, 509, 859
AjnI CCWGG 3 cut(s) 74, 207, 1000
AleI CACNNNNGTG 1 cut(s) 964
AluBI AGCT 6 cut(s) 81, 328, 365, 391, 921, 982
AluI AGCT 6 cut(s) 81, 328, 365, 391, 921, 982
Alw21I GWGCWC 1 cut(s) 717
Alw26I GTCTC 2 cut(s) 528, 637
AlwNI CAGNNNCTG 1 cut(s) 81
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 3 cut(s) 280, 439, 767
ApeKI GCWGC 4 cut(s) 48, 81, 176, 731
ApoI RAATTY 2 cut(s) 873, 907
Asp718I GGTACC 1 cut(s) 95
AspS9I GGNCC 3 cut(s) 194, 586, 767
AsuHPI GGTGA 4 cut(s) 140, 146, 767, 845
AsuII TTCGAA 1 cut(s) 333
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 2 cut(s) 194, 586
AxyI CCTNAGG 1 cut(s) 590
BanI GGYRCC 2 cut(s) 26, 95
BbsI GAAGAC 1 cut(s) 692
Bbv12I GWGCWC 1 cut(s) 717
BbvI GCAGC 4 cut(s) 35, 68, 163, 718
BccI CCATC 4 cut(s) 446, 637, 758, 845
BciT130I CCWGG 3 cut(s) 76, 209, 1002
BciVI GTATCC 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 528, 637
BfuAI ACCTGC 1 cut(s) 846
BfuI GTATCC 1 cut(s) 157
BisI GCNGC 4 cut(s) 49, 82, 177, 732
BlsI GCNGC 4 cut(s) 50, 83, 178, 733
Bme1390I CCNGG 3 cut(s) 76, 209, 1002
Bme18I GGWCC 2 cut(s) 194, 586
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 3 cut(s) 194, 586, 767
BmiI GGNNCC 4 cut(s) 28, 97, 195, 196
BmrFI CCNGG 3 cut(s) 76, 209, 1002
BmsI GCATC 2 cut(s) 217, 946
BpiI GAAGAC 1 cut(s) 692
BpmI CTGGAG 1 cut(s) 191
Bpu14I TTCGAA 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 879
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bsc4I CCNNNNNNNGG 2 cut(s) 453, 968
Bse21I CCTNAGG 1 cut(s) 590
BseBI CCWGG 3 cut(s) 76, 209, 1002
BseDI CCNNGG 1 cut(s) 879
BseGI GGATG 3 cut(s) 54, 343, 648
BseLI CCNNNNNNNGG 2 cut(s) 453, 968
BseMII CTCAG 1 cut(s) 581
BseRI GAGGAG 2 cut(s) 5, 596
BseXI GCAGC 4 cut(s) 35, 68, 163, 718
Bsh1236I CGCG 1 cut(s) 927
BshFI GGCC 3 cut(s) 282, 441, 769
BshNI GGYRCC 2 cut(s) 26, 95
BsiHKAI GWGCWC 1 cut(s) 717
BsiHKCI CYCGRG 1 cut(s) 261
BslFI GGGAC 2 cut(s) 180, 279
BslI CCNNNNNNNGG 2 cut(s) 453, 968
BsmAI GTCTC 2 cut(s) 528, 637
BsmBI CGTCTC 1 cut(s) 637
BsmFI GGGAC 2 cut(s) 180, 279
BsmI GAATGC 2 cut(s) 193, 787
BsnI GGCC 3 cut(s) 282, 441, 769
BsoBI CYCGRG 1 cut(s) 261
Bsp119I TTCGAA 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 717
Bsp143I GATC 2 cut(s) 627, 823
BspACI CCGC 3 cut(s) 191, 322, 925
BspANI GGCC 3 cut(s) 282, 441, 769
BspCNI CTCAG 1 cut(s) 582
BspFNI CGCG 1 cut(s) 927
BspHI TCATGA 1 cut(s) 742
BspLI GGNNCC 4 cut(s) 28, 97, 195, 196
BspMI ACCTGC 1 cut(s) 846
BspT104I TTCGAA 1 cut(s) 333
BspT107I GGYRCC 2 cut(s) 26, 95
BssECI CCNNGG 1 cut(s) 879
BssMI GATC 2 cut(s) 627, 823
Bst2UI CCWGG 3 cut(s) 76, 209, 1002
Bst6I CTCTTC 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 566
BstBI TTCGAA 1 cut(s) 333
BstC8I GCNNGC 2 cut(s) 363, 717
BstDEI CTNAG 2 cut(s) 387, 590
BstDSI CCRYGG 1 cut(s) 879
BstEII GGTNACC 1 cut(s) 833
BstF5I GGATG 3 cut(s) 54, 343, 648
BstFNI CGCG 1 cut(s) 927
BstKTI GATC 2 cut(s) 630, 826
BstMAI GTCTC 2 cut(s) 528, 637
BstMBI GATC 2 cut(s) 627, 823
BstMWI GCNNNNNNNGC 3 cut(s) 45, 279, 566
BstNI CCWGG 3 cut(s) 76, 209, 1002
BstPI GGTNACC 1 cut(s) 833
BstSCI CCNGG 3 cut(s) 74, 207, 1000
BstUI CGCG 1 cut(s) 927
BstV1I GCAGC 4 cut(s) 35, 68, 163, 718
BstV2I GAAGAC 1 cut(s) 692
BstXI CCANNNNNNTGG 1 cut(s) 643
Bsu36I CCTNAGG 1 cut(s) 590
BsuI GTATCC 1 cut(s) 157
BsuRI GGCC 3 cut(s) 282, 441, 769
BtgI CCRYGG 1 cut(s) 879
BtsCI GGATG 3 cut(s) 54, 343, 648
BveI ACCTGC 1 cut(s) 846
Cac8I GCNNGC 2 cut(s) 363, 717
CaiI CAGNNNCTG 1 cut(s) 81
CciI TCATGA 1 cut(s) 742
Cfr13I GGNCC 3 cut(s) 194, 586, 767
CseI GACGC 1 cut(s) 774
Csp6I GTAC 2 cut(s) 96, 244
CviAII CATG 4 cut(s) 118, 278, 743, 964
CviQI GTAC 2 cut(s) 96, 244
DdeI CTNAG 2 cut(s) 387, 590
DpnI GATC 2 cut(s) 629, 825
DpnII GATC 2 cut(s) 627, 823
DraI TTTAAA 2 cut(s) 616, 679
DrdI GACNNNNNNGTC 1 cut(s) 273
DseDI GACNNNNNNGTC 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco147I AGGCCT 1 cut(s) 441
Eco32I GATATC 1 cut(s) 574
Eco47I GGWCC 2 cut(s) 194, 586
Eco81I CCTNAGG 1 cut(s) 590
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 833
EcoO109I RGGNCCY 2 cut(s) 194, 586
EcoO65I GGTNACC 1 cut(s) 833
EcoRI GAATTC 1 cut(s) 907
EcoRII CCWGG 3 cut(s) 74, 207, 1000
EcoRV GATATC 1 cut(s) 574
Esp3I CGTCTC 1 cut(s) 637
FaeI CATG 4 cut(s) 121, 281, 746, 967
FaqI GGGAC 2 cut(s) 180, 279
FatI CATG 4 cut(s) 117, 277, 742, 963
FauI CCCGC 2 cut(s) 184, 315
Fnu4HI GCNGC 4 cut(s) 49, 82, 177, 732
FokI GGATG 3 cut(s) 41, 330, 655
Fsp4HI GCNGC 4 cut(s) 49, 82, 177, 732
GluI GCNGC 4 cut(s) 49, 82, 177, 732
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 3 cut(s) 282, 441, 769
HgaI GACGC 1 cut(s) 774
Hin1II CATG 4 cut(s) 121, 281, 746, 967
HindIII AAGCTT 2 cut(s) 389, 980
HinfI GANTC 5 cut(s) 122, 298, 415, 476, 691
HphI GGTGA 4 cut(s) 140, 146, 767, 845
Hpy166II GTNNAC 2 cut(s) 604, 946
Hpy188I TCNGA 5 cut(s) 111, 127, 186, 850, 891
Hpy188III TCNNGA 5 cut(s) 302, 589, 722, 743, 793
Hpy8I GTNNAC 2 cut(s) 604, 946
HpyCH4IV ACGT 1 cut(s) 939
HpyCH4V TGCA 3 cut(s) 289, 569, 959
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 279, 566
HpyF3I CTNAG 2 cut(s) 387, 590
HpySE526I ACGT 1 cut(s) 939
Hsp92II CATG 4 cut(s) 121, 281, 746, 967
KflI GGGWCCC 1 cut(s) 194
KpnI GGTACC 1 cut(s) 99
Kzo9I GATC 2 cut(s) 627, 823
LmnI GCTCC 3 cut(s) 78, 325, 739
Lsp1109I GCAGC 4 cut(s) 35, 68, 163, 718
LweI GCATC 2 cut(s) 217, 946
MaeII ACGT 1 cut(s) 939
MaeIII GTNAC 1 cut(s) 833
MalI GATC 2 cut(s) 629, 825
MboI GATC 2 cut(s) 627, 823
MboII GAAGA 5 cut(s) 10, 637, 697, 806, 813
MfeI CAATTG 2 cut(s) 372, 483
MhlI GDGCHC 1 cut(s) 717
MluCI AATT 7 cut(s) 171, 372, 483, 509, 749, 873, 907
MlyI GAGTC 1 cut(s) 409
MseI TTAA 2 cut(s) 615, 678
MslI CAYNNNNRTG 3 cut(s) 831, 964, 994
MspR9I CCNGG 3 cut(s) 76, 209, 1002
MunI CAATTG 2 cut(s) 372, 483
Mva1269I GAATGC 2 cut(s) 193, 787
MvaI CCWGG 3 cut(s) 76, 209, 1002
MvnI CGCG 1 cut(s) 927
MwoI GCNNNNNNNGC 3 cut(s) 45, 279, 566
NdeII GATC 2 cut(s) 627, 823
NlaIII CATG 4 cut(s) 121, 281, 746, 967
NlaIV GGNNCC 4 cut(s) 28, 97, 195, 196
NmuCI GTSAC 1 cut(s) 833
NspV TTCGAA 1 cut(s) 333
OliI CACNNNNGTG 1 cut(s) 964
PagI TCATGA 1 cut(s) 742
PceI AGGCCT 1 cut(s) 441
PctI GAATGC 2 cut(s) 193, 787
PfeI GAWTC 4 cut(s) 122, 298, 476, 691
PfoI TCCNGGA 2 cut(s) 74, 1000
PkrI GCNGC 4 cut(s) 50, 83, 178, 733
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
PpuMI RGGWCCY 2 cut(s) 194, 586
Psp5II RGGWCCY 2 cut(s) 194, 586
Psp6I CCWGG 3 cut(s) 74, 207, 1000
PspEI GGTNACC 1 cut(s) 833
PspGI CCWGG 3 cut(s) 74, 207, 1000
PspN4I GGNNCC 4 cut(s) 28, 97, 195, 196
PspPI GGNCC 3 cut(s) 194, 586, 767
PspPPI RGGWCCY 2 cut(s) 194, 586
PstNI CAGNNNCTG 1 cut(s) 81
RsaI GTAC 2 cut(s) 97, 245
RsaNI GTAC 2 cut(s) 96, 244
RseI CAYNNNNRTG 3 cut(s) 831, 964, 994
SaqAI TTAA 2 cut(s) 615, 678
SatI GCNGC 4 cut(s) 49, 82, 177, 732
Sau3AI GATC 2 cut(s) 627, 823
Sau96I GGNCC 3 cut(s) 194, 586, 767
SchI GAGTC 1 cut(s) 409
ScrFI CCNGG 3 cut(s) 76, 209, 1002
SduI GDGCHC 1 cut(s) 717
SfaNI GCATC 2 cut(s) 217, 946
SfuI TTCGAA 1 cut(s) 333
SinI GGWCC 2 cut(s) 194, 586
SmiMI CAYNNNNRTG 3 cut(s) 831, 964, 994
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 7 cut(s) 171, 372, 483, 509, 749, 873, 907
SseBI AGGCCT 1 cut(s) 441
SsiI CCGC 3 cut(s) 191, 322, 925
StuI AGGCCT 1 cut(s) 441
StyD4I CCNGG 3 cut(s) 74, 207, 1000
TaiI ACGT 1 cut(s) 942
TaqI TCGA 1 cut(s) 333
TasI AATT 7 cut(s) 171, 372, 483, 509, 749, 873, 907
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 4 cut(s) 122, 298, 476, 691
Tru1I TTAA 2 cut(s) 615, 678
Tru9I TTAA 2 cut(s) 615, 678
TseFI GTSAC 1 cut(s) 833
TseI GCWGC 4 cut(s) 48, 81, 176, 731
Tsp45I GTSAC 1 cut(s) 833
TspDTI ATGAA 3 cut(s) 43, 683, 731
TspGWI ACGGA 2 cut(s) 457, 868
VpaK11BI GGWCC 2 cut(s) 194, 586
XapI RAATTY 2 cut(s) 873, 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.