Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004077

Physical Location & Seq

Genomic Coordinates Reverse (-)

35788821 .. 35797416

Gene Structure 8596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGGAACAGTTGTTAACGCTGCCAACAAGGAGGAGGCTAATCGAAGCTTAGCCGATCTGAATCCTACTGTTGTTTTCGTCTTGGGTGGCCCAGGCAGTGGAAAGGGTACCCAATGCGCAAACATTGTTCAGCACTTTGGGTTTACACATCTGAGTGCTGGTGATCTACTACGAGCAGAAATCAAGTCTGGTTCTGAAAATGGAACCATGATTTCGAACATGATAAAAGAAGGAAAAATTGTTCCATCGGAAGTAACAATTAAGCTTCTCCAGAAAGCAATGCTGGAGAGTGGTAATGACAAATTTCTTATCGATGGGTTTCCTCGTAATGAAGAAAACCGTTCTGCATTTGAGGCTGTGACTAAAGTCGAGCCTTCATTTGTCCTGTTTTTTGATTGTTCTGAAGAAGAGATGGAGAGGCGCCTTTTGAGTAGGAACCAGGGAAGAGAAGATGACAACATAGAAACAATAAGGAAGCGGTTTAAGGTTTTTCTAGAGTCTAGTCTCCCAGTGATAGAATACTATAACTCCAAGGGGAAAGTTCGGAAGATTGATGCTGGAAGGCCTGTTGAAGAGGTTTATGAGTCAGTAAAAGCCATTTTTGCCCCGAAAGATGAGAAGATTGATGCTGGAAGACCTGTTGAAGAGGTTTTTGAGTTGGAAAATGAGAAGGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

ADK

Protein Analysis

226

Amino Acids

25.16

Weight (kDa)

5.1

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	24 - 159	3.7e-06	AAA domain
AAA_18	PF13238	25 - 151	1.1e-08	AAA domain
ADK	PF00406	27 - 179	2.5e-48	Adenylate kinase
AAA_17	PF13207	28 - 158	2.5e-37	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60180 AT3G60180 AT5G26667 AT5G26667 AT5G26667 AT5G26667
fragaria_vesca	FvH4_6g07810 FvH4_6g07810 FvH4_6g07810
malus_domestica	MD04G1062600.v1.1 MD07G1087100.v1.1
prunus_persica	Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1
pyrus_communis	pycom04g05600
rosa_chinensis	RchiOBHm_Chr1g0343601 RchiOBHm_Chr3g0457521
rosa_laevigata	RLG00000028960
rosa_multiflora	Rmu_sc0000335.1_g000002 Rmu_sc0001290.1_g000001 Rmu_sc0007404.1_g000013 Rmu_sc0007404.1_g000014
rosa_roxburghii	Rroxscaffold_4G00310450 Rroxscaffold_6G00421800
rosa_rugosa	Rorug01G0167700 Rorug03G0020700
rosa_samantha	Rh1AG183900 Rh3BG083600 Rh3CG083800 Rh3DG085200
rosa_wichuraiana	Rw1G015230 Rw3G006990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	118
Acc65I	GGTACC	1 cut(s)	107
AccB1I	GGYRCC	2 cut(s)	107, 420
AccB7I	CCANNNNNTGG	1 cut(s)	98
AciI	CCGC	1 cut(s)	478
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	423
AcyI	GRCGYC	1 cut(s)	421
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	2 cut(s)	572, 644
AjnI	CCWGG	2 cut(s)	91, 438
AloI	GAACNNNNNNTCC	2 cut(s)	225, 257
AluBI	AGCT	2 cut(s)	48, 265
AluI	AGCT	2 cut(s)	48, 265
Alw26I	GTCTC	1 cut(s)	509
AoxI	GGCC	2 cut(s)	88, 563
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	302
Asp718I	GGTACC	1 cut(s)	107
AspLEI	GCGC	2 cut(s)	119, 423
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	173
AsuII	TTCGAA	1 cut(s)	215
BanI	GGYRCC	2 cut(s)	107, 420
BbsI	GAAGAC	1 cut(s)	640
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	3 cut(s)	253, 308, 406
BciT130I	CCWGG	2 cut(s)	93, 440
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	2 cut(s)	494, 501
BfoI	RGCGCY	1 cut(s)	424
BisI	GCNGC	1 cut(s)	21
BlpI	GCTNAGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	2 cut(s)	93, 440
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	4 cut(s)	109, 205, 422, 437
BmrFI	CCNGG	2 cut(s)	93, 440
BmrI	ACTGGG	1 cut(s)	503
BmsI	GCATC	2 cut(s)	544, 616
BmuI	ACTGGG	1 cut(s)	503
BoxI	GACNNNNGTC	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	640
BpmI	CTGGAG	2 cut(s)	254, 305
Bpu1102I	GCTNAGC	1 cut(s)	49
Bpu14I	TTCGAA	1 cut(s)	215
Bsa29I	ATCGAT	1 cut(s)	312
BsaBI	GATNNNNATC	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	421
BsaJI	CCNNGG	3 cut(s)	91, 439, 531
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	509
Bse3DI	GCAATG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	93, 440
BseCI	ATCGAT	1 cut(s)	312
BseDI	CCNNGG	3 cut(s)	91, 439, 531
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	509
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	7
BshFI	GGCC	2 cut(s)	90, 565
BshNI	GGYRCC	2 cut(s)	107, 420
BshVI	ATCGAT	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	90, 565
Bsp119I	TTCGAA	1 cut(s)	215
Bsp143I	GATC	2 cut(s)	55, 163
Bsp1720I	GCTNAGC	1 cut(s)	49
BspACI	CCGC	1 cut(s)	478
BspANI	GGCC	2 cut(s)	90, 565
BspCNI	CTCAG	1 cut(s)	144
BspDI	ATCGAT	1 cut(s)	312
BspLI	GGNNCC	4 cut(s)	109, 205, 422, 437
BspT104I	TTCGAA	1 cut(s)	215
BspT107I	GGYRCC	2 cut(s)	107, 420
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	509
BssECI	CCNNGG	3 cut(s)	91, 439, 531
BssMI	GATC	2 cut(s)	55, 163
BssNI	GRCGYC	1 cut(s)	421
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	2 cut(s)	93, 440
Bst4CI	ACNGT	3 cut(s)	10, 70, 341
Bst6I	CTCTTC	4 cut(s)	402, 439, 567, 639
BstACI	GRCGYC	1 cut(s)	421
BstBI	TTCGAA	1 cut(s)	215
BstDEI	CTNAG	2 cut(s)	49, 152
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	2 cut(s)	119, 423
BstKTI	GATC	2 cut(s)	58, 166
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	2 cut(s)	55, 163
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 602
BstNI	CCWGG	2 cut(s)	93, 440
BstPAI	GACNNNNGTC	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	91, 438
BstV1I	GCAGC	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	640
Bsu15I	ATCGAT	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	90, 565
BsuTUI	ATCGAT	1 cut(s)	312
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	103, 516
CfoI	GCGC	2 cut(s)	119, 423
Cfr13I	GGNCC	1 cut(s)	89
ClaI	ATCGAT	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	2 cut(s)	208, 220
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	2 cut(s)	49, 152
DinI	GGCGCC	1 cut(s)	422
DpnI	GATC	2 cut(s)	57, 165
DpnII	GATC	2 cut(s)	55, 163
Eam1104I	CTCTTC	4 cut(s)	402, 439, 567, 639
EarI	CTCTTC	4 cut(s)	402, 439, 567, 639
Eco130I	CCWWGG	1 cut(s)	531
Eco147I	AGGCCT	1 cut(s)	565
Eco57I	CTGAAG	1 cut(s)	423
EcoRII	CCWGG	2 cut(s)	91, 438
EcoT14I	CCWWGG	1 cut(s)	531
EgeI	GGCGCC	1 cut(s)	422
EheI	GGCGCC	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	2 cut(s)	211, 223
FaiI	YATR	5 cut(s)	209, 221, 461, 525, 582
FatI	CATG	2 cut(s)	207, 219
Fnu4HI	GCNGC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	2 cut(s)	494, 501
FspI	TGCGCA	1 cut(s)	118
GlaI	GCGC	2 cut(s)	118, 422
GluI	GCNGC	1 cut(s)	21
GsuI	CTGGAG	2 cut(s)	254, 305
HaeII	RGCGCY	1 cut(s)	424
HaeIII	GGCC	2 cut(s)	90, 565
HhaI	GCGC	2 cut(s)	119, 423
Hin1I	GRCGYC	1 cut(s)	421
Hin1II	CATG	2 cut(s)	211, 223
Hin6I	GCGC	2 cut(s)	117, 421
HinP1I	GCGC	2 cut(s)	117, 421
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	2 cut(s)	46, 263
HinfI	GANTC	3 cut(s)	61, 497, 584
HpaI	GTTAAC	1 cut(s)	16
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	16, 144
Hpy188I	TCNGA	6 cut(s)	60, 153, 196, 250, 403, 546
Hpy188III	TCNNGA	2 cut(s)	271, 494
Hpy8I	GTNNAC	2 cut(s)	16, 144
HpyAV	CCTTC	4 cut(s)	224, 384, 555, 664
HpyCH4III	ACNGT	3 cut(s)	10, 70, 341
HpyCH4V	TGCA	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 602
HpyF3I	CTNAG	2 cut(s)	49, 152
Hsp92I	GRCGYC	1 cut(s)	421
Hsp92II	CATG	2 cut(s)	211, 223
HspAI	GCGC	2 cut(s)	117, 421
KasI	GGCGCC	1 cut(s)	420
KpnI	GGTACC	1 cut(s)	111
KspAI	GTTAAC	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	55, 163
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	2 cut(s)	544, 616
MaeI	CTAG	2 cut(s)	494, 501
MaeIII	GTNAC	2 cut(s)	253, 358
MalI	GATC	2 cut(s)	57, 165
MboI	GATC	2 cut(s)	55, 163
MluCI	AATT	3 cut(s)	237, 258, 302
Mly113I	GGCGCC	1 cut(s)	421
MlyI	GAGTC	2 cut(s)	506, 593
MmeI	TCCRAC	1 cut(s)	639
MnlI	CCTC	7 cut(s)	25, 28, 333, 346, 411, 568, 640
MseI	TTAA	4 cut(s)	15, 261, 483, 679
MslI	CAYNNNNRTG	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	93, 440
MvaI	CCWGG	2 cut(s)	93, 440
MwoI	GCNNNNNNNGC	2 cut(s)	353, 602
NarI	GGCGCC	1 cut(s)	421
NdeII	GATC	2 cut(s)	55, 163
NlaIII	CATG	2 cut(s)	211, 223
NlaIV	GGNNCC	4 cut(s)	109, 205, 422, 437
NmuCI	GTSAC	1 cut(s)	358
NsbI	TGCGCA	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	215
PceI	AGGCCT	1 cut(s)	565
PfeI	GAWTC	1 cut(s)	61
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	2 cut(s)	505, 592
PluTI	GGCGCC	1 cut(s)	424
PpsI	GAGTC	2 cut(s)	505, 592
PshAI	GACNNNNGTC	1 cut(s)	365
Psp6I	CCWGG	2 cut(s)	91, 438
PspGI	CCWGG	2 cut(s)	91, 438
PspN4I	GGNNCC	4 cut(s)	109, 205, 422, 437
PspPI	GGNCC	1 cut(s)	89
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	4 cut(s)	15, 261, 483, 679
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	2 cut(s)	55, 163
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	2 cut(s)	506, 593
ScrFI	CCNGG	2 cut(s)	93, 440
SetI	ASST	6 cut(s)	50, 267, 489, 579, 640, 651
SfaNI	GCATC	2 cut(s)	544, 616
SfoI	GGCGCC	1 cut(s)	422
SfuI	TTCGAA	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	3 cut(s)	237, 258, 302
SseBI	AGGCCT	1 cut(s)	565
SsiI	CCGC	1 cut(s)	478
SspDI	GGCGCC	1 cut(s)	420
SspMI	CTAG	2 cut(s)	494, 501
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	2 cut(s)	91, 438
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	3 cut(s)	10, 70, 341
TaqI	TCGA	4 cut(s)	43, 215, 312, 369
TasI	AATT	3 cut(s)	237, 258, 302
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	4 cut(s)	15, 261, 483, 679
Tru9I	TTAA	4 cut(s)	15, 261, 483, 679
TscAI	CASTG	2 cut(s)	103, 516
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	2 cut(s)	345, 366
TspRI	CASTG	2 cut(s)	103, 516
Van91I	CCANNNNNTGG	1 cut(s)	98
XapI	RAATTY	1 cut(s)	302
XbaI	TCTAGA	1 cut(s)	493
XspI	CTAG	2 cut(s)	494, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.