RchiOBHm_Chr1g0357281

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016117
Physical Location & Seq
Reverse (-)
49721997 .. 49723876
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 819 bp
ATGGCTAATATTCGTTGTGGTCTTAGATATTTAACTCCAACCATAGGTTGTGTTTCTCTCTCTTTTCAAATGGCAAACATTTTCTCCTATGCTTCCATTACACCACGCCTCACTGCTCAGCACCACCACCTCAGTTTCCAGCCAAATTATCTCAGTTTACAGCCAAGTCAGCGTTACAGTGTCTGCAGATTTCGTTGCAGTGGTGAAAACCCAACAAGGAAATCAACATCCAATACAGAATCCCAACCAGAAAATGCAAATGTAGTGCTTAAGGTTGCTTGGTATGCCTCTGAGTTTTTGGGCATTGCCACTTCGTTTTTCAACCCACCATCCAAAGTTGAAGCTCCTGAAACTGCTCTTGAGCTTGCAAGAGATGGGTCTGGAGCCGTTGATCGTGCCGGAGTAGTAAAATCAATCAAAGATGACTTTGAAAGATCATACTTTGTCACAGGGAACCTCACGCTTGATGCATATGAAGAGGTTTGTGAATTTGCTGATCCTGCAAGCTCATTCAAAGGGCTTCAACGTTTCAAAAGGAACTGTACTAATTTTGGATCCCTTTTAAAGAAGTCAAATATGAAGCTTATGAAGTGGGAAGATTTTGAGGATAAAGGAATTGGTCACTGGAGATTCAGTTGTATCTTGTCATTCCCTTGGAGGCCAATTCTATCTGCAAGTGGATACACTGAGTACTACTTTGATGAACGGTCAGGGAAAGTGTCCAGGCATGTAGAGCACTGGAATGTTCCCAAAATGGTTTTACTGAAGCAGATTTTAAAGCCAAGCAGGGGATTCTGGCTTAAGAAAACAGGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

272

Amino Acids

30.89

Weight (kDa)

9.27

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 135 - 243 2e-11 Uncharacterized conserved protein (DUF2358)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46100 AT2G46100
fragaria_vesca FvH4_7g15085
malus_domestica MD01G1069500.v1.1
prunus_persica Prupe.2G175600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0357281
rosa_laevigata RLG00000028031
rosa_rugosa Rorug01G0256000
rosa_samantha Rh1AG269300 Rh1BG237200 Rh1CG253500 Rh1DG265100
rosa_wichuraiana Rw1G023850 Rw1G024010 Rw1G024050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 526
AclWI GGATC 3 cut(s) 491, 549, 562
AcsI RAATTY 1 cut(s) 488
AcuI CTGAAG 1 cut(s) 785
AfaI GTAC 2 cut(s) 544, 692
AfiI CCNNNNNNNGG 2 cut(s) 44, 788
AflII CTTAAG 2 cut(s) 269, 800
AgsI TTSAA 7 cut(s) 68, 322, 341, 431, 514, 524, 532
AjnI CCWGG 1 cut(s) 722
AluBI AGCT 4 cut(s) 344, 364, 507, 583
AluI AGCT 4 cut(s) 344, 364, 507, 583
Alw21I GWGCWC 1 cut(s) 738
AlwI GGATC 3 cut(s) 491, 549, 562
AlwNI CAGNNNCTG 1 cut(s) 183
AoxI GGCC 1 cut(s) 659
ApoI RAATTY 1 cut(s) 488
AsuHPI GGTGA 1 cut(s) 215
BamHI GGATCC 1 cut(s) 554
Bbv12I GWGCWC 1 cut(s) 738
BccI CCATC 2 cut(s) 337, 368
BceAI ACGGC 1 cut(s) 371
BciT130I CCWGG 1 cut(s) 724
BciVI GTATCC 1 cut(s) 674
BfmI CTRYAG 1 cut(s) 184
BfrI CTTAAG 2 cut(s) 269, 800
BfuI GTATCC 1 cut(s) 674
BlpI GCTNAGC 1 cut(s) 117
BmcAI AGTACT 1 cut(s) 692
Bme1390I CCNGG 1 cut(s) 724
BmiI GGNNCC 3 cut(s) 385, 455, 556
BmrFI CCNGG 1 cut(s) 724
BmsI GCATC 1 cut(s) 457
BpmI CTGGAG 2 cut(s) 402, 646
Bpu1102I GCTNAGC 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 653
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 619, 649
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 788
Bse1I ACTGG 2 cut(s) 629, 743
Bse3DI GCAATG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 724
BseDI CCNNGG 1 cut(s) 653
BseGI GGATG 2 cut(s) 227, 329
BseLI CCNNNNNNNGG 2 cut(s) 44, 788
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 5 cut(s) 131, 145, 166, 282, 678
BseNI ACTGG 2 cut(s) 629, 743
BshFI GGCC 1 cut(s) 661
BsiHKAI GWGCWC 1 cut(s) 738
BsiSI CCGG 1 cut(s) 399
BslI CCNNNNNNNGG 2 cut(s) 44, 788
BsnI GGCC 1 cut(s) 661
Bsp1286I GDGCHC 1 cut(s) 738
Bsp143I GATC 4 cut(s) 391, 434, 496, 554
Bsp1720I GCTNAGC 1 cut(s) 117
BspANI GGCC 1 cut(s) 661
BspCNI CTCAG 5 cut(s) 130, 144, 165, 283, 679
BspLI GGNNCC 3 cut(s) 385, 455, 556
BspMAI CTGCAG 1 cut(s) 188
BspPI GGATC 3 cut(s) 491, 549, 562
BspTI CTTAAG 2 cut(s) 269, 800
BsrDI GCAATG 1 cut(s) 303
BsrI ACTGG 2 cut(s) 629, 743
BssECI CCNNGG 1 cut(s) 653
BssMI GATC 4 cut(s) 391, 434, 496, 554
BssT1I CCWWGG 1 cut(s) 653
Bst2UI CCWGG 1 cut(s) 724
Bst4CI ACNGT 3 cut(s) 179, 542, 708
Bst6I CTCTTC 1 cut(s) 471
BstAFI CTTAAG 2 cut(s) 269, 800
BstC8I GCNNGC 2 cut(s) 366, 505
BstDEI CTNAG 6 cut(s) 23, 117, 131, 152, 291, 687
BstF5I GGATG 2 cut(s) 227, 329
BstKTI GATC 4 cut(s) 394, 437, 499, 557
BstMBI GATC 4 cut(s) 391, 434, 496, 554
BstMWI GCNNNNNNNGC 4 cut(s) 169, 284, 500, 733
BstNI CCWGG 1 cut(s) 724
BstNSI RCATGY 1 cut(s) 731
BstSCI CCNGG 1 cut(s) 722
BstSFI CTRYAG 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 554
BstYI RGATCY 1 cut(s) 554
BsuI GTATCC 1 cut(s) 674
BsuRI GGCC 1 cut(s) 661
BtsCI GGATG 2 cut(s) 227, 329
BtsI GCAGTG 2 cut(s) 111, 205
BtsIMutI CAGTG 6 cut(s) 111, 184, 205, 622, 684, 736
Cac8I GCNNGC 2 cut(s) 366, 505
CaiI CAGNNNCTG 1 cut(s) 183
Csp6I GTAC 2 cut(s) 543, 691
CviAII CATG 1 cut(s) 728
CviQI GTAC 2 cut(s) 543, 691
DdeI CTNAG 6 cut(s) 23, 117, 131, 152, 291, 687
DpnI GATC 4 cut(s) 393, 436, 498, 556
DpnII GATC 4 cut(s) 391, 434, 496, 554
DraI TTTAAA 2 cut(s) 564, 777
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco130I CCWWGG 1 cut(s) 653
Eco57I CTGAAG 1 cut(s) 785
EcoRII CCWGG 1 cut(s) 722
EcoT14I CCWWGG 1 cut(s) 653
EcoT22I ATGCAT 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 653
FaeI CATG 1 cut(s) 731
FaiI YATR 9 cut(s) 44, 90, 285, 439, 472, 474, 578, 587, 729
FatI CATG 1 cut(s) 727
FauNDI CATATG 1 cut(s) 472
FokI GGATG 2 cut(s) 214, 316
GsuI CTGGAG 2 cut(s) 402, 646
HaeIII GGCC 1 cut(s) 661
HapII CCGG 1 cut(s) 399
Hin1II CATG 1 cut(s) 731
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 3 cut(s) 239, 630, 792
HpaII CCGG 1 cut(s) 399
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 3 cut(s) 347, 359, 381
Hpy8I GTNNAC 1 cut(s) 158
HpyCH4III ACNGT 3 cut(s) 179, 542, 708
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 7 cut(s) 186, 198, 257, 368, 470, 503, 674
HpyF10VI GCNNNNNNNGC 4 cut(s) 169, 284, 500, 733
HpyF3I CTNAG 6 cut(s) 23, 117, 131, 152, 291, 687
HpySE526I ACGT 1 cut(s) 526
Hsp92II CATG 1 cut(s) 731
Kzo9I GATC 4 cut(s) 391, 434, 496, 554
LmnI GCTCC 2 cut(s) 349, 383
LweI GCATC 1 cut(s) 457
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 3 cut(s) 173, 445, 620
MalI GATC 4 cut(s) 393, 436, 498, 556
MboI GATC 4 cut(s) 391, 434, 496, 554
MboII GAAGA 2 cut(s) 488, 608
MflI RGATCY 1 cut(s) 554
MhlI GDGCHC 1 cut(s) 738
MluCI AATT 5 cut(s) 145, 488, 547, 615, 663
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 7 cut(s) 119, 140, 298, 467, 472, 598, 651
Mph1103I ATGCAT 1 cut(s) 472
MseI TTAA 5 cut(s) 32, 270, 563, 776, 801
MslI CAYNNNNRTG 1 cut(s) 741
MspCI CTTAAG 2 cut(s) 269, 800
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 1 cut(s) 724
MvaI CCWGG 1 cut(s) 724
MwoI GCNNNNNNNGC 4 cut(s) 169, 284, 500, 733
NdeI CATATG 1 cut(s) 472
NdeII GATC 4 cut(s) 391, 434, 496, 554
NlaIII CATG 1 cut(s) 731
NlaIV GGNNCC 3 cut(s) 385, 455, 556
NmuCI GTSAC 2 cut(s) 445, 620
NsiI ATGCAT 1 cut(s) 472
NspI RCATGY 1 cut(s) 731
PfeI GAWTC 3 cut(s) 239, 630, 792
Psp1406I AACGTT 1 cut(s) 526
Psp6I CCWGG 1 cut(s) 722
PspGI CCWGG 1 cut(s) 722
PspN4I GGNNCC 3 cut(s) 385, 455, 556
PstI CTGCAG 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 183
PsuI RGATCY 1 cut(s) 554
RsaI GTAC 2 cut(s) 544, 692
RsaNI GTAC 2 cut(s) 543, 691
RseI CAYNNNNRTG 1 cut(s) 741
SaqAI TTAA 5 cut(s) 32, 270, 563, 776, 801
Sau3AI GATC 4 cut(s) 391, 434, 496, 554
ScaI AGTACT 1 cut(s) 692
ScrFI CCNGG 1 cut(s) 724
SduI GDGCHC 1 cut(s) 738
SfaNI GCATC 1 cut(s) 457
SfcI CTRYAG 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 741
SmlI CTYRAG 3 cut(s) 269, 359, 800
SmoI CTYRAG 3 cut(s) 269, 359, 800
Sse9I AATT 5 cut(s) 145, 488, 547, 615, 663
SspI AATATT 1 cut(s) 10
StyD4I CCNGG 1 cut(s) 722
StyI CCWWGG 1 cut(s) 653
TaaI ACNGT 3 cut(s) 179, 542, 708
TaiI ACGT 1 cut(s) 529
TasI AATT 5 cut(s) 145, 488, 547, 615, 663
TatI WGTACW 2 cut(s) 542, 690
TfiI GAWTC 3 cut(s) 239, 630, 792
Tru1I TTAA 5 cut(s) 32, 270, 563, 776, 801
Tru9I TTAA 5 cut(s) 32, 270, 563, 776, 801
TscAI CASTG 6 cut(s) 118, 184, 205, 629, 691, 743
TseFI GTSAC 2 cut(s) 445, 620
Tsp45I GTSAC 2 cut(s) 445, 620
TspDTI ATGAA 4 cut(s) 489, 593, 602, 717
TspRI CASTG 6 cut(s) 118, 184, 205, 629, 691, 743
Vha464I CTTAAG 2 cut(s) 269, 800
XapI RAATTY 1 cut(s) 488
XceI RCATGY 1 cut(s) 731
ZrmI AGTACT 1 cut(s) 692
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.