RchiOBHm_Chr1g0358021

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009790
Physical Location & Seq
Reverse (-)
50180442 .. 50181323
882 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 231 bp
ATGAATAATCGGTTGAGTCTAATAAGCCTTGAGCTGGAGCGAGTTCTGGTTAGTGTTTTATCTTACTACAAGGAGCGGTGCTGGGGCTTGGTTTTGGGGATTATCGGTAGATCTGCGGCGGCGAGGTCTCTGGCTACTAGGAGATTGGCCTTCAAGATCAGTGTGCTGTATTTTGATGTAGAGGTGAACGGAAAAGTGAGTAGGTCTTATGGCTTTCCTTCTGCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

76

Amino Acids

8.48

Weight (kDa)

10.12

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 76
AciI CCGC 3 cut(s) 76, 116, 119
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 132
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 196
BbvI GCAGC 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 1 cut(s) 138
BglII AGATCT 1 cut(s) 110
BisI GCNGC 3 cut(s) 117, 120, 225
BlsI GCNGC 3 cut(s) 118, 121, 226
BpmI CTGGAG 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 211
BseYI CCCAGC 1 cut(s) 81
BshFI GGCC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 132
BsnI GGCC 1 cut(s) 149
Bso31I GGTCTC 1 cut(s) 132
Bsp143I GATC 2 cut(s) 110, 156
BspACI CCGC 3 cut(s) 76, 116, 119
BspANI GGCC 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 132
BsrBI CCGCTC 1 cut(s) 76
BssMI GATC 2 cut(s) 110, 156
BstKTI GATC 2 cut(s) 113, 159
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 2 cut(s) 110, 156
BstV1I GCAGC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BsuRI GGCC 1 cut(s) 149
BtsIMutI CAGTG 1 cut(s) 166
CviJI RGCY 6 cut(s) 27, 34, 87, 134, 149, 213
CviKI_1 RGCY 6 cut(s) 27, 34, 87, 134, 149, 213
DpnI GATC 2 cut(s) 112, 158
DpnII GATC 2 cut(s) 110, 156
Eco31I GGTCTC 1 cut(s) 132
FaiI YATR 1 cut(s) 210
Fnu4HI GCNGC 3 cut(s) 117, 120, 225
Fsp4HI GCNGC 3 cut(s) 117, 120, 225
FspBI CTAG 1 cut(s) 138
GluI GCNGC 3 cut(s) 117, 120, 225
GsaI CCCAGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 1 cut(s) 149
HinfI GANTC 1 cut(s) 16
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 2 cut(s) 160, 228
Kzo9I GATC 2 cut(s) 110, 156
LmnI GCTCC 2 cut(s) 37, 73
LpnPI CCDG 4 cut(s) 20, 32, 67, 116
Lsp1109I GCAGC 1 cut(s) 211
MaeI CTAG 1 cut(s) 138
MalI GATC 2 cut(s) 112, 158
MbiI CCGCTC 1 cut(s) 76
MboI GATC 2 cut(s) 110, 156
MflI RGATCY 1 cut(s) 110
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 2 cut(s) 117, 175
NdeII GATC 2 cut(s) 110, 156
PkrI GCNGC 3 cut(s) 118, 121, 226
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PspFI CCCAGC 1 cut(s) 81
PsuI RGATCY 1 cut(s) 110
SatI GCNGC 3 cut(s) 117, 120, 225
Sau3AI GATC 2 cut(s) 110, 156
SchI GAGTC 1 cut(s) 25
SetI ASST 4 cut(s) 36, 128, 186, 206
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SsiI CCGC 3 cut(s) 76, 116, 119
SspMI CTAG 1 cut(s) 138
TauI GCSGC 2 cut(s) 119, 122
TscAI CASTG 1 cut(s) 166
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 204
TspRI CASTG 1 cut(s) 166
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.