Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006054

Physical Location & Seq

Genomic Coordinates Reverse (-)

53651415 .. 53653203

Gene Structure 1789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGATAGGGATCTCTAGCAGACCCACCAAGCAGAAAGATAAAAGCTTCAATACACATTTTCTTGTTCTACTTTCTCACCATGAAAAAATAGGAACCAAGACTATAAAAACAGAACCCTGTTCCTCTGTTAGTGATGCGCTTAAACCCCAAATGGCTTCTAATAACGTCAAGAACGCAGTGGTTGCATTTCTAGCTCCCCTTCCCTCCATTCTCTTCTACCTCACATTCCTCCACAACCACCAAACCAGTAGTAGCCCTGAGGCTCTCTCTCCTATTTGGGCATGGTGTTATCACCACCCTCTTCTTCTAGCCAATGCCGTCTTCTTCTTCAACGTCAATGTCCTCTTTTGGGTCATCAGCCAAGTCCTCTCCAGCCATTGGATGATCGATTTGTATTGGACTGTGATACCTGTAATGCTGGTTCATTACTACCGGACTCACCCTCTGGCTGATTTTAACTGGTGGCGGTCAACGATTGGAGTGGTGTTGACTTGGGTTTGGAGCGTAAGGCTGACCCATAACTATTTTAGGCGGGAAAATTGGCAATGGGGAGCCAGAGAGGACTGGAGGTTCACCGATATGAACTCACAGTACGGCAAACAGTGGTGGTGGATTTCTTTCTTTGCTGTTTATCTTTCTCAGCAGGTTTTTCTGATTGGAATATGCCTTCCTTTGTATGTGATCCACTCGGTTAATGTGCCATTGAACATGTGGGATTTTGTTGCCATCATTGTCTGCATTTCTGGTATTGTTGTTGCATACATTGCCGATACGCAGCTCCATGAGTTTGTGAGTAGAAACAATGAGTTTAAGCAGCTTGGGAAGCCGGTTGTGCCCAATCTTGATGAGGGGTTGTGGCGTTATTCGCGACATCCCAACTATTTTGGAGAGCAGTTGTGGTGGTGGGGACTGGTTGTGTTTGCATGGAACCTGGGACAGGGATGGACCTTTGTCGGCTCTTTTGTCAATACAATGTGTTTGGCTTATGTGACGACGCTTGTGGAGAAGCGAATGCTGAAGCAAGATTTCAGAGCAGAAGCATACAGGCAGTATCAGAAGACTACCTCAGTGTGGATCCCTTGGTTCAAGTCATCTGCAACTGGAGAAAAAGATAAGAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016229 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1295

Protein Analysis

374

Amino Acids

43.94

Weight (kDa)

9.23

Isoelectric Point (pI)

29.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1295	PF06966	116 - 355	6.1e-64	Protein of unknown function (DUF1295)
PEMT	PF04191	241 - 344	6.4e-06	Phospholipid methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46890
fragaria_vesca	FvH4_7g18190 FvH4_7g18190 FvH4_7g18190
malus_domestica	MD07G1165100.v1.1
prunus_persica	Prupe.2G203800_v2.0.a1
pyrus_communis	pycom07g16020
rosa_chinensis	RchiOBHm_Chr1g0361831 RchiOBHm_Chr1g0361841
rosa_laevigata	RLG00000027699 RLG00000027700
rosa_multiflora	Rmu_ssc0000124.1_g000016 Rmu_ssc0000124.1_g000017 Rmu_ssc0000124.1_g000018
rosa_roxburghii	Rroxscaffold_4G00294660 Rroxscaffold_4G00294670
rosa_rugosa	Rorug01G0291500 Rorug01G0291600
rosa_samantha	Rh1AG302200 Rh1AG302400 Rh1BG265100 Rh1BG265200 Rh1CG283600 Rh1DG295100 Rh1DG295200
rosa_wichuraiana	Rw1G026780 Rw1G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	634
AccB7I	CCANNNNNTGG	1 cut(s)	378
AccII	CGCG	1 cut(s)	868
AciI	CCGC	2 cut(s)	466, 532
AclWI	GGATC	4 cut(s)	17, 676, 1069, 1082
AcuI	CTGAAG	1 cut(s)	1037
AfaI	GTAC	1 cut(s)	593
AfiI	CCNNNNNNNGG	4 cut(s)	349, 378, 937, 1071
AflIII	ACRYGT	1 cut(s)	708
AgsI	TTSAA	4 cut(s)	49, 331, 706, 1087
AjnI	CCWGG	1 cut(s)	930
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AloI	GAACNNNNNNTCC	2 cut(s)	554, 586
AluBI	AGCT	5 cut(s)	45, 194, 778, 817, 1121
AluI	AGCT	5 cut(s)	45, 194, 778, 817, 1121
AlwI	GGATC	4 cut(s)	17, 676, 1069, 1082
ApeKI	GCWGC	2 cut(s)	775, 814
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	945
AsuHPI	GGTGA	4 cut(s)	68, 284, 431, 565
AvaII	GGWCC	1 cut(s)	945
AxyI	CCTNAGG	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	837
BamHI	GGATCC	1 cut(s)	1074
BbsI	GAAGAC	2 cut(s)	313, 1064
BbvI	GCAGC	2 cut(s)	787, 826
BccI	CCATC	2 cut(s)	734, 936
BceAI	ACGGC	2 cut(s)	302, 610
BciT130I	CCWGG	1 cut(s)	932
BfaI	CTAG	3 cut(s)	15, 191, 308
BfuAI	ACCTGC	1 cut(s)	634
BisI	GCNGC	2 cut(s)	776, 815
BlsI	GCNGC	2 cut(s)	777, 816
Bme1390I	CCNGG	1 cut(s)	932
Bme18I	GGWCC	1 cut(s)	945
BmgT120I	GGNCC	1 cut(s)	945
BmiI	GGNNCC	4 cut(s)	94, 553, 929, 1076
BmrFI	CCNGG	1 cut(s)	932
BmsI	GCATC	1 cut(s)	124
BoxI	GACNNNNGTC	1 cut(s)	950
BpiI	GAAGAC	2 cut(s)	313, 1064
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
BpmI	CTGGAG	3 cut(s)	355, 586, 1122
Bsa29I	ATCGAT	1 cut(s)	387
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	931, 1079
BsaWI	WCCGGW	1 cut(s)	432
Bsc4I	CCNNNNNNNGG	4 cut(s)	349, 378, 937, 1071
Bse118I	RCCGGY	1 cut(s)	826
Bse1I	ACTGG	5 cut(s)	246, 464, 569, 915, 1105
Bse21I	CCTNAGG	1 cut(s)	258
Bse3DI	GCAATG	2 cut(s)	551, 762
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	932
BseCI	ATCGAT	1 cut(s)	387
BseDI	CCNNGG	2 cut(s)	931, 1079
BseGI	GGATG	3 cut(s)	387, 871, 947
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	4 cut(s)	349, 378, 937, 1071
BseMI	GCAATG	2 cut(s)	551, 762
BseMII	CTCAG	3 cut(s)	249, 653, 1080
BseNI	ACTGG	5 cut(s)	246, 464, 569, 915, 1105
BseSI	GKGCMC	1 cut(s)	837
BseXI	GCAGC	2 cut(s)	787, 826
Bsh1236I	CGCG	1 cut(s)	868
BshVI	ATCGAT	1 cut(s)	387
BsiSI	CCGG	2 cut(s)	433, 827
BslFI	GGGAC	2 cut(s)	921, 948
BslI	CCNNNNNNNGG	4 cut(s)	349, 378, 937, 1071
BsmFI	GGGAC	2 cut(s)	921, 948
BsmI	GAATGC	1 cut(s)	1017
Bsp1286I	GDGCHC	1 cut(s)	837
Bsp143I	GATC	4 cut(s)	9, 384, 681, 1074
Bsp68I	TCGCGA	1 cut(s)	868
BspACI	CCGC	2 cut(s)	466, 532
BspCNI	CTCAG	3 cut(s)	250, 652, 1079
BspDI	ATCGAT	1 cut(s)	387
BspFNI	CGCG	1 cut(s)	868
BspLI	GGNNCC	4 cut(s)	94, 553, 929, 1076
BspMI	ACCTGC	1 cut(s)	634
BspPI	GGATC	4 cut(s)	17, 676, 1069, 1082
BsrDI	GCAATG	2 cut(s)	551, 762
BsrFI	RCCGGY	1 cut(s)	826
BsrI	ACTGG	5 cut(s)	246, 464, 569, 915, 1105
BssAI	RCCGGY	1 cut(s)	826
BssECI	CCNNGG	2 cut(s)	931, 1079
BssMI	GATC	4 cut(s)	9, 384, 681, 1074
BssT1I	CCWWGG	1 cut(s)	1079
Bst2UI	CCWGG	1 cut(s)	932
Bst4CI	ACNGT	3 cut(s)	403, 591, 603
Bst6I	CTCTTC	2 cut(s)	218, 306
BstAPI	GCANNNNNTGC	2 cut(s)	182, 764
BstDEI	CTNAG	3 cut(s)	258, 639, 1066
BstENI	CCTNNNNNAGG	1 cut(s)	935
BstF5I	GGATG	3 cut(s)	387, 871, 947
BstFNI	CGCG	1 cut(s)	868
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	4 cut(s)	12, 387, 684, 1077
BstMBI	GATC	4 cut(s)	9, 384, 681, 1074
BstMWI	GCNNNNNNNGC	6 cut(s)	182, 191, 764, 823, 832, 865
BstNI	CCWGG	1 cut(s)	932
BstNSI	RCATGY	1 cut(s)	712
BstPAI	GACNNNNGTC	1 cut(s)	950
BstSCI	CCNGG	1 cut(s)	930
BstSLI	GKGCMC	1 cut(s)	837
BstUI	CGCG	1 cut(s)	868
BstV1I	GCAGC	2 cut(s)	787, 826
BstV2I	GAAGAC	2 cut(s)	313, 1064
BstX2I	RGATCY	2 cut(s)	9, 1074
BstYI	RGATCY	2 cut(s)	9, 1074
Bsu15I	ATCGAT	1 cut(s)	387
Bsu36I	CCTNAGG	1 cut(s)	258
BsuTUI	ATCGAT	1 cut(s)	387
BtsCI	GGATG	3 cut(s)	387, 871, 947
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	3 cut(s)	183, 608, 1074
BtuMI	TCGCGA	1 cut(s)	868
BveI	ACCTGC	1 cut(s)	634
CfoI	GCGC	1 cut(s)	139
Cfr10I	RCCGGY	1 cut(s)	826
Cfr13I	GGNCC	1 cut(s)	945
ClaI	ATCGAT	1 cut(s)	387
CseI	GACGC	1 cut(s)	1003
Csp6I	GTAC	1 cut(s)	592
CviAII	CATG	5 cut(s)	80, 282, 709, 782, 924
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	3 cut(s)	258, 639, 1066
DpnI	GATC	4 cut(s)	11, 386, 683, 1076
DpnII	GATC	4 cut(s)	9, 384, 681, 1074
Eam1104I	CTCTTC	2 cut(s)	218, 306
EarI	CTCTTC	2 cut(s)	218, 306
Eco130I	CCWWGG	1 cut(s)	1079
Eco47I	GGWCC	1 cut(s)	945
Eco57I	CTGAAG	1 cut(s)	1037
Eco81I	CCTNAGG	1 cut(s)	258
EcoNI	CCTNNNNNAGG	1 cut(s)	935
EcoRII	CCWGG	1 cut(s)	930
EcoT14I	CCWWGG	1 cut(s)	1079
ErhI	CCWWGG	1 cut(s)	1079
FaeI	CATG	5 cut(s)	83, 285, 712, 785, 927
FaqI	GGGAC	2 cut(s)	921, 948
FatI	CATG	5 cut(s)	79, 281, 708, 781, 923
FauI	CCCGC	1 cut(s)	525
Fnu4HI	GCNGC	2 cut(s)	776, 815
FokI	GGATG	3 cut(s)	394, 858, 954
Fsp4HI	GCNGC	2 cut(s)	776, 815
FspBI	CTAG	3 cut(s)	15, 191, 308
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	2 cut(s)	776, 815
GsuI	CTGGAG	3 cut(s)	355, 586, 1122
HapII	CCGG	2 cut(s)	433, 827
HgaI	GACGC	1 cut(s)	1003
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	5 cut(s)	83, 285, 712, 785, 927
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HincII	GTYRAC	2 cut(s)	471, 489
HindII	GTYRAC	2 cut(s)	471, 489
HindIII	AAGCTT	2 cut(s)	43, 1119
HinfI	GANTC	1 cut(s)	436
HpaII	CCGG	2 cut(s)	433, 827
HphI	GGTGA	4 cut(s)	68, 284, 431, 565
Hpy166II	GTNNAC	3 cut(s)	471, 489, 573
Hpy188I	TCNGA	3 cut(s)	654, 1031, 1056
Hpy188III	TCNNGA	3 cut(s)	169, 842, 867
Hpy8I	GTNNAC	3 cut(s)	471, 489, 573
Hpy99I	CGWCG	1 cut(s)	997
HpyAV	CCTTC	2 cut(s)	209, 677
HpyCH4III	ACNGT	3 cut(s)	403, 591, 603
HpyCH4IV	ACGT	2 cut(s)	165, 333
HpyCH4V	TGCA	5 cut(s)	185, 738, 758, 923, 1097
HpyF10VI	GCNNNNNNNGC	6 cut(s)	182, 191, 764, 823, 832, 865
HpyF3I	CTNAG	3 cut(s)	258, 639, 1066
HpySE526I	ACGT	2 cut(s)	165, 333
Hsp92II	CATG	5 cut(s)	83, 285, 712, 785, 927
HspAI	GCGC	1 cut(s)	137
Kzo9I	GATC	4 cut(s)	9, 384, 681, 1074
LmnI	GCTCC	4 cut(s)	199, 501, 551, 783
Lsp1109I	GCAGC	2 cut(s)	787, 826
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	3 cut(s)	15, 191, 308
MaeII	ACGT	2 cut(s)	165, 333
MaeIII	GTNAC	1 cut(s)	988
MalI	GATC	4 cut(s)	11, 386, 683, 1076
MboI	GATC	4 cut(s)	9, 384, 681, 1074
MboII	GAAGA	7 cut(s)	205, 293, 296, 313, 316, 319, 1069
MflI	RGATCY	2 cut(s)	9, 1074
MhlI	GDGCHC	1 cut(s)	837
MluCI	AATT	1 cut(s)	538
MlyI	GAGTC	1 cut(s)	430
MseI	TTAA	5 cut(s)	141, 456, 693, 810, 1123
MslI	CAYNNNNRTG	1 cut(s)	578
MspI	CCGG	2 cut(s)	433, 827
MspR9I	CCNGG	1 cut(s)	932
Mva1269I	GAATGC	1 cut(s)	1017
MvaI	CCWGG	1 cut(s)	932
MvnI	CGCG	1 cut(s)	868
MwoI	GCNNNNNNNGC	6 cut(s)	182, 191, 764, 823, 832, 865
NdeII	GATC	4 cut(s)	9, 384, 681, 1074
NlaIII	CATG	5 cut(s)	83, 285, 712, 785, 927
NlaIV	GGNNCC	4 cut(s)	94, 553, 929, 1076
NmuCI	GTSAC	1 cut(s)	988
NruI	TCGCGA	1 cut(s)	868
NspI	RCATGY	1 cut(s)	712
PciI	ACATGT	1 cut(s)	708
PctI	GAATGC	1 cut(s)	1017
PflMI	CCANNNNNTGG	1 cut(s)	378
PkrI	GCNGC	2 cut(s)	777, 816
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PscI	ACATGT	1 cut(s)	708
PshAI	GACNNNNGTC	1 cut(s)	950
Psp6I	CCWGG	1 cut(s)	930
PspGI	CCWGG	1 cut(s)	930
PspN4I	GGNNCC	4 cut(s)	94, 553, 929, 1076
PspPI	GGNCC	1 cut(s)	945
PsrI	GAACNNNNNNTAC	4 cut(s)	405, 437, 575, 607
PsuI	RGATCY	2 cut(s)	9, 1074
RruI	TCGCGA	1 cut(s)	868
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
RseI	CAYNNNNRTG	1 cut(s)	578
SaqAI	TTAA	5 cut(s)	141, 456, 693, 810, 1123
SatI	GCNGC	2 cut(s)	776, 815
Sau3AI	GATC	4 cut(s)	9, 384, 681, 1074
Sau96I	GGNCC	1 cut(s)	945
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	932
SduI	GDGCHC	1 cut(s)	837
SfaNI	GCATC	1 cut(s)	124
SinI	GGWCC	1 cut(s)	945
SmiMI	CAYNNNNRTG	1 cut(s)	578
Sse9I	AATT	1 cut(s)	538
SsiI	CCGC	2 cut(s)	466, 532
SspMI	CTAG	3 cut(s)	15, 191, 308
StyD4I	CCNGG	1 cut(s)	930
StyI	CCWWGG	1 cut(s)	1079
TaaI	ACNGT	3 cut(s)	403, 591, 603
TaiI	ACGT	2 cut(s)	168, 336
TaqI	TCGA	1 cut(s)	387
TasI	AATT	1 cut(s)	538
Tru1I	TTAA	5 cut(s)	141, 456, 693, 810, 1123
Tru9I	TTAA	5 cut(s)	141, 456, 693, 810, 1123
TscAI	CASTG	3 cut(s)	183, 608, 1074
TseFI	GTSAC	1 cut(s)	988
TseI	GCWGC	2 cut(s)	775, 814
Tsp45I	GTSAC	1 cut(s)	988
TspDTI	ATGAA	3 cut(s)	96, 413, 596
TspRI	CASTG	3 cut(s)	183, 608, 1074
Van91I	CCANNNNNTGG	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	945
XagI	CCTNNNNNAGG	1 cut(s)	935
XceI	RCATGY	1 cut(s)	712
XcmI	CCANNNNNNNNNTGG	1 cut(s)	708
XspI	CTAG	3 cut(s)	15, 191, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.