RchiOBHm_Chr1g0364421

Belongs to the adenylate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012875
Physical Location & Seq
Forward (+)
55601775 .. 55604325
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 885 bp
ATGGCGGTTCTGAGCCGCGTTCTGAGACTAAGAGTGGCGGGAGTAGACCGCTTCGCAGTCCGGAGCTTCCGGTCTTCGTCTTCGTCGTGGCGAAATTCCGAAATTGACCCCAAGGCGGCGGCGGCGTCGCAGCAGCTCGGGGAAAAGGCGCTTCCTTTACAGCGAGACGTCAAGGACAGAAACGTCCAGTGGGTTTTCCTCGGCTGCCCGGGCGTCGGCAAAGGCACCTACGCGTCTAAACTCTCGACTCTGCTCGGCGTGCCTCATATTGCGACCGGCGATCTCGTCCGCGACGAGCTTTCCTCTTCCGGTCCGCTAGCTAAGCAGCTTGAGGAGGTTGTAAATCAAGGCAAATTGGTTTCGGATGAGATTATAATAAACTTGCTGTCCAAGCGTCTTGAAGCTAGCTCAGCTAAGGGTGAAACTGGCTTTATTCTTGATGGTTTCCCTCGCACAATTCGACAGGCGGAAATTTTAGAGGGAGTTACTGAAATTGACTTGGTAATCAACCTAAAGCTTCGGGAAGAGGCTTTGCTTGCCAAGTGCCTTGGAAGAAGGATTTGCAGTGAGTGTGGAGGAAATTACAATGTTGCCAGCATTGATATTAAAGCTGAGGAAGGGGACCCTGGTATGTACATGGCTCCACTTCTTCCACCTCCACTTTGTACATCAAAGCTTATCTCGCGATCCGATGACACTGAAGAAGTTGTTAAGAGACGACTACGTATATATAATGAAATGAGTCAACCTGTGGAGGAGTTCTATCGCAGTCGGGGAAAATTGTTAGAGTTTGATCTTCCTGGAGGGATTCCAGAATCCTGGCCAAAGCTGCTTCGAGCTTTAAATCTGGAAGACCATGATGACAAAGAGTCTGCCGCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130
Pfam Domains
Protein Families
ADK

Protein Analysis

294

Amino Acids

32.34

Weight (kDa)

5.93

Isoelectric Point (pI)

61.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADK PF00406 67 - 259 2.7e-39 Adenylate kinase
AAA_17 PF13207 67 - 186 1.6e-21 AAA domain
AAA_18 PF13238 67 - 185 2.6e-06 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012875)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39270
fragaria_vesca FvH4_7g20530
malus_domestica MD01G1114300.v1.1 MD07G1182200.v1.1
prunus_persica Prupe.2G220900_v2.0.a1
pyrus_communis pycom01g14330 pycom07g17490
rosa_chinensis RchiOBHm_Chr1g0364421
rosa_laevigata RLG00000027481
rosa_multiflora Rmu_sc0001342.1_g000005
rosa_roxburghii Rroxscaffold_4G00292290
rosa_rugosa Rorug01G0316000 Rorug01G0316000
rosa_samantha Rh1AG324300 Rh1BG287000 Rh1CG303600 Rh1DG318500
rosa_wichuraiana Rw1G028740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AasI GACNNNNNNGTC 1 cut(s) 182
AatII GACGTC 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 224
AccI GTMKAC 1 cut(s) 45
AccII CGCG 4 cut(s) 18, 233, 291, 685
AccIII TCCGGA 1 cut(s) 60
AclWI GGATC 1 cut(s) 681
AcoI YGGCCR 1 cut(s) 821
AcsI RAATTY 2 cut(s) 94, 471
AcuI CTGAAG 1 cut(s) 720
AcyI GRCGYC 3 cut(s) 125, 168, 213
AfaI GTAC 2 cut(s) 635, 667
AfiI CCNNNNNNNGG 2 cut(s) 115, 215
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 1 cut(s) 401
AhdI GACNNNNNGTC 1 cut(s) 868
AjnI CCWGG 3 cut(s) 625, 799, 818
Alw26I GTCTC 3 cut(s) 19, 159, 709
AlwI GGATC 1 cut(s) 681
Ama87I CYCGRG 2 cut(s) 137, 208
Aor13HI TCCGGA 1 cut(s) 60
AoxI GGCC 1 cut(s) 821
ApeKI GCWGC 6 cut(s) 130, 133, 204, 325, 829, 878
ApoI RAATTY 2 cut(s) 94, 471
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 311, 622
AsuC2I CCSGG 2 cut(s) 209, 210
AsuHPI GGTGA 1 cut(s) 431
AsuNHI GCTAGC 2 cut(s) 316, 404
AvaI CYCGRG 2 cut(s) 137, 208
AvaII GGWCC 2 cut(s) 311, 622
BalI TGGCCA 1 cut(s) 823
BanI GGYRCC 1 cut(s) 224
BbsI GAAGAC 3 cut(s) 66, 72, 858
BbvCI CCTCAGC 1 cut(s) 612
BbvI GCAGC 5 cut(s) 142, 145, 191, 337, 816
BccI CCATC 1 cut(s) 434
BciT130I CCWGG 3 cut(s) 627, 801, 820
BcnI CCSGG 2 cut(s) 209, 210
BcoDI GTCTC 3 cut(s) 19, 159, 709
BfaI CTAG 2 cut(s) 317, 405
BfoI RGCGCY 1 cut(s) 152
BlpI GCTNAGC 2 cut(s) 321, 409
Bme1390I CCNGG 5 cut(s) 209, 210, 627, 801, 820
Bme18I GGWCC 2 cut(s) 311, 622
BmeRI GACNNNNNGTC 1 cut(s) 868
BmeT110I CYCGRG 2 cut(s) 137, 208
BmgT120I GGNCC 2 cut(s) 311, 622
BmiI GGNNCC 4 cut(s) 226, 623, 624, 642
BmrFI CCNGG 5 cut(s) 209, 210, 627, 801, 820
BmtI GCTAGC 2 cut(s) 320, 408
BpiI GAAGAC 3 cut(s) 66, 72, 858
BplI GAGNNNNNCTC 2 cut(s) 287, 319
BpmI CTGGAG 1 cut(s) 822
Bpu10I CCTNAGC 2 cut(s) 414, 612
Bpu1102I GCTNAGC 2 cut(s) 321, 409
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 2 cut(s) 209, 210
BsaAI YACGTR 1 cut(s) 725
BsaHI GRCGYC 3 cut(s) 125, 168, 213
BsaJI CCNNGG 5 cut(s) 111, 199, 208, 547, 625
BsaWI WCCGGW 3 cut(s) 60, 69, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 215
Bse118I RCCGGY 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 187, 430
BseAI TCCGGA 1 cut(s) 60
BseBI CCWGG 3 cut(s) 627, 801, 820
BseDI CCNNGG 5 cut(s) 111, 199, 208, 547, 625
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 2 cut(s) 115, 215
BseMII CTCAG 3 cut(s) 14, 423, 603
BseNI ACTGG 2 cut(s) 187, 430
BseRI GAGGAG 2 cut(s) 347, 770
BseXI GCAGC 5 cut(s) 142, 145, 191, 337, 816
Bsh1236I CGCG 4 cut(s) 18, 233, 291, 685
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 1 cut(s) 823
BshNI GGYRCC 1 cut(s) 224
BsiEI CGRYCG 1 cut(s) 276
BsiHKCI CYCGRG 2 cut(s) 137, 208
BsiSI CCGG 5 cut(s) 61, 70, 209, 276, 309
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 2 cut(s) 115, 215
BsmAI GTCTC 3 cut(s) 19, 159, 709
BsmBI CGTCTC 2 cut(s) 159, 709
BsmFI GGGAC 1 cut(s) 635
BsnI GGCC 1 cut(s) 823
BsoBI CYCGRG 2 cut(s) 137, 208
Bsp13I TCCGGA 1 cut(s) 60
Bsp1407I TGTACA 2 cut(s) 633, 665
Bsp143I GATC 3 cut(s) 280, 686, 793
Bsp1720I GCTNAGC 2 cut(s) 321, 409
Bsp68I TCGCGA 1 cut(s) 685
BspANI GGCC 1 cut(s) 823
BspCNI CTCAG 3 cut(s) 15, 422, 604
BspEI TCCGGA 1 cut(s) 60
BspFNI CGCG 4 cut(s) 18, 233, 291, 685
BspLI GGNNCC 4 cut(s) 226, 623, 624, 642
BspOI GCTAGC 2 cut(s) 320, 408
BspPI GGATC 1 cut(s) 681
BspT107I GGYRCC 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 275
BsrGI TGTACA 2 cut(s) 633, 665
BsrI ACTGG 2 cut(s) 187, 430
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 5 cut(s) 111, 199, 208, 547, 625
BssMI GATC 3 cut(s) 280, 686, 793
BssNI GRCGYC 3 cut(s) 125, 168, 213
BssT1I CCWWGG 2 cut(s) 111, 547
Bst2UI CCWGG 3 cut(s) 627, 801, 820
Bst6I CTCTTC 2 cut(s) 310, 519
BstACI GRCGYC 3 cut(s) 125, 168, 213
BstAUI TGTACA 2 cut(s) 633, 665
BstBAI YACGTR 1 cut(s) 725
BstC8I GCNNGC 5 cut(s) 260, 318, 406, 537, 595
BstDEI CTNAG 7 cut(s) 11, 23, 29, 321, 409, 414, 612
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 4 cut(s) 18, 233, 291, 685
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 3 cut(s) 283, 689, 796
BstMAI GTCTC 3 cut(s) 19, 159, 709
BstMBI GATC 3 cut(s) 280, 686, 793
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 9 cut(s) 122, 210, 259, 322, 391, 410, 536, 682, 829
BstNI CCWGG 3 cut(s) 627, 801, 820
BstSCI CCNGG 5 cut(s) 207, 208, 625, 799, 818
BstSNI TACGTA 1 cut(s) 725
BstUI CGCG 4 cut(s) 18, 233, 291, 685
BstV1I GCAGC 5 cut(s) 142, 145, 191, 337, 816
BstV2I GAAGAC 3 cut(s) 66, 72, 858
BstXI CCANNNNNNTGG 1 cut(s) 819
BsuRI GGCC 1 cut(s) 823
BtsCI GGATG 1 cut(s) 370
BtsI GCAGTG 1 cut(s) 571
BtsIMutI CAGTG 3 cut(s) 194, 571, 696
BtuMI TCGCGA 1 cut(s) 685
Cac8I GCNNGC 5 cut(s) 260, 318, 406, 537, 595
CfoI GCGC 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 2 cut(s) 311, 622
Cfr9I CCCGGG 1 cut(s) 208
CpoI CGGWCCG 1 cut(s) 311
CseI GACGC 4 cut(s) 114, 202, 222, 383
Csp6I GTAC 2 cut(s) 634, 666
CspI CGGWCCG 1 cut(s) 311
CviAII CATG 3 cut(s) 637, 857, 882
CviQI GTAC 2 cut(s) 634, 666
DdeI CTNAG 7 cut(s) 11, 23, 29, 321, 409, 414, 612
DpnI GATC 3 cut(s) 282, 688, 795
DpnII GATC 3 cut(s) 280, 686, 793
DraI TTTAAA 1 cut(s) 843
DrdI GACNNNNNNGTC 1 cut(s) 182
DriI GACNNNNNGTC 1 cut(s) 868
DseDI GACNNNNNNGTC 1 cut(s) 182
EaeI YGGCCR 1 cut(s) 821
Eam1104I CTCTTC 2 cut(s) 310, 519
Eam1105I GACNNNNNGTC 1 cut(s) 868
EarI CTCTTC 2 cut(s) 310, 519
EciI GGCGGA 1 cut(s) 482
Eco105I TACGTA 1 cut(s) 725
Eco130I CCWWGG 2 cut(s) 111, 547
Eco47I GGWCC 2 cut(s) 311, 622
Eco57I CTGAAG 1 cut(s) 720
Eco88I CYCGRG 2 cut(s) 137, 208
EcoO109I RGGNCCY 1 cut(s) 622
EcoRII CCWGG 3 cut(s) 625, 799, 818
EcoT14I CCWWGG 2 cut(s) 111, 547
ErhI CCWWGG 2 cut(s) 111, 547
Esp3I CGTCTC 2 cut(s) 159, 709
FaeI CATG 3 cut(s) 640, 860, 885
FaiI YATR 9 cut(s) 267, 374, 632, 638, 728, 730, 732, 858, 883
FaqI GGGAC 1 cut(s) 635
FatI CATG 3 cut(s) 636, 856, 881
FauI CCCGC 1 cut(s) 31
FblI GTMKAC 1 cut(s) 45
FokI GGATG 1 cut(s) 377
FspBI CTAG 2 cut(s) 317, 405
GlaI GCGC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 822
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 1 cut(s) 823
HapII CCGG 5 cut(s) 61, 70, 209, 276, 309
HgaI GACGC 4 cut(s) 114, 202, 222, 383
HhaI GCGC 1 cut(s) 151
Hin1I GRCGYC 3 cut(s) 125, 168, 213
Hin1II CATG 3 cut(s) 640, 860, 885
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HincII GTYRAC 1 cut(s) 746
HindII GTYRAC 1 cut(s) 746
HindIII AAGCTT 2 cut(s) 515, 674
HinfI GANTC 5 cut(s) 247, 742, 808, 815, 869
HpaII CCGG 5 cut(s) 61, 70, 209, 276, 309
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 2 cut(s) 46, 746
Hpy188I TCNGA 5 cut(s) 12, 24, 100, 364, 691
Hpy188III TCNNGA 8 cut(s) 61, 244, 398, 437, 521, 684, 812, 848
Hpy8I GTNNAC 2 cut(s) 46, 746
Hpy99I CGWCG 4 cut(s) 88, 130, 218, 296
HpyAV CCTTC 2 cut(s) 549, 611
HpyCH4IV ACGT 3 cut(s) 168, 183, 724
HpyCH4V TGCA 1 cut(s) 564
HpyF10VI GCNNNNNNNGC 9 cut(s) 122, 210, 259, 322, 391, 410, 536, 682, 829
HpyF3I CTNAG 7 cut(s) 11, 23, 29, 321, 409, 414, 612
HpySE526I ACGT 3 cut(s) 168, 183, 724
Hsp92I GRCGYC 3 cut(s) 125, 168, 213
Hsp92II CATG 3 cut(s) 640, 860, 885
HspAI GCGC 1 cut(s) 149
KflI GGGWCCC 1 cut(s) 622
Kpn2I TCCGGA 1 cut(s) 60
Kzo9I GATC 3 cut(s) 280, 686, 793
LmnI GCTCC 2 cut(s) 63, 646
Lsp1109I GCAGC 5 cut(s) 142, 145, 191, 337, 816
MaeI CTAG 2 cut(s) 317, 405
MaeII ACGT 3 cut(s) 168, 183, 724
MaeIII GTNAC 1 cut(s) 484
MalI GATC 3 cut(s) 282, 688, 795
MboI GATC 3 cut(s) 280, 686, 793
MboII GAAGA 9 cut(s) 66, 72, 297, 536, 564, 641, 713, 788, 863
MlsI TGGCCA 1 cut(s) 823
MluCI AATT 8 cut(s) 94, 102, 353, 456, 471, 492, 580, 779
MluI ACGCGT 1 cut(s) 231
MluNI TGGCCA 1 cut(s) 823
MlyI GAGTC 3 cut(s) 241, 751, 878
Mox20I TGGCCA 1 cut(s) 823
MroI TCCGGA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 823
MseI TTAA 3 cut(s) 606, 711, 842
Msp20I TGGCCA 1 cut(s) 823
MspI CCGG 5 cut(s) 61, 70, 209, 276, 309
MspR9I CCNGG 5 cut(s) 209, 210, 627, 801, 820
MvaI CCWGG 3 cut(s) 627, 801, 820
MvnI CGCG 4 cut(s) 18, 233, 291, 685
MwoI GCNNNNNNNGC 9 cut(s) 122, 210, 259, 322, 391, 410, 536, 682, 829
NciI CCSGG 2 cut(s) 209, 210
NdeII GATC 3 cut(s) 280, 686, 793
NheI GCTAGC 2 cut(s) 316, 404
NlaIII CATG 3 cut(s) 640, 860, 885
NlaIV GGNNCC 4 cut(s) 226, 623, 624, 642
NmeAIII GCCGAG 2 cut(s) 180, 234
NruI TCGCGA 1 cut(s) 685
PcsI WCGNNNNNNNCGW 3 cut(s) 83, 291, 457
PfeI GAWTC 2 cut(s) 808, 815
PfoI TCCNGGA 1 cut(s) 799
PleI GAGTC 3 cut(s) 241, 750, 877
PpsI GAGTC 3 cut(s) 241, 750, 877
Ppu21I YACGTR 1 cut(s) 725
PpuMI RGGWCCY 1 cut(s) 622
PsiI TTATAA 1 cut(s) 374
Psp5II RGGWCCY 1 cut(s) 622
Psp6I CCWGG 3 cut(s) 625, 799, 818
PspGI CCWGG 3 cut(s) 625, 799, 818
PspN4I GGNNCC 4 cut(s) 226, 623, 624, 642
PspPI GGNCC 2 cut(s) 311, 622
PspPPI RGGWCCY 1 cut(s) 622
RruI TCGCGA 1 cut(s) 685
RsaI GTAC 2 cut(s) 635, 667
RsaNI GTAC 2 cut(s) 634, 666
Rsr2I CGGWCCG 1 cut(s) 311
RsrII CGGWCCG 1 cut(s) 311
SaqAI TTAA 3 cut(s) 606, 711, 842
Sau3AI GATC 3 cut(s) 280, 686, 793
Sau96I GGNCC 2 cut(s) 311, 622
SchI GAGTC 3 cut(s) 241, 751, 878
ScrFI CCNGG 5 cut(s) 209, 210, 627, 801, 820
SinI GGWCC 2 cut(s) 311, 622
SmaI CCCGGG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SnaBI TACGTA 1 cut(s) 725
SrfI GCCCGGGC 1 cut(s) 210
Sse9I AATT 8 cut(s) 94, 102, 353, 456, 471, 492, 580, 779
SspMI CTAG 2 cut(s) 317, 405
StyD4I CCNGG 5 cut(s) 207, 208, 625, 799, 818
StyI CCWWGG 2 cut(s) 111, 547
TaiI ACGT 3 cut(s) 171, 186, 727
TaqI TCGA 3 cut(s) 245, 460, 835
TasI AATT 8 cut(s) 94, 102, 353, 456, 471, 492, 580, 779
TatI WGTACW 2 cut(s) 633, 665
TauI GCSGC 5 cut(s) 18, 119, 122, 125, 878
TfiI GAWTC 2 cut(s) 808, 815
Tru1I TTAA 3 cut(s) 606, 711, 842
Tru9I TTAA 3 cut(s) 606, 711, 842
TscAI CASTG 3 cut(s) 194, 571, 703
TseI GCWGC 6 cut(s) 130, 133, 204, 325, 829, 878
TspDTI ATGAA 1 cut(s) 750
TspMI CCCGGG 1 cut(s) 208
TspRI CASTG 3 cut(s) 194, 571, 703
VpaK11BI GGWCC 2 cut(s) 311, 622
XapI RAATTY 2 cut(s) 94, 471
XmaI CCCGGG 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 2 cut(s) 317, 405
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.