Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017385

Physical Location & Seq

Genomic Coordinates Reverse (-)

57776508 .. 57777021

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGATATATTGGGTGTTTATGGATCAGATTTACTGTCTGAAGCTGATTGGAGAAGATTGATCATGCTTTTTCATGTACCTAATATTAACTCAAGTGTCTATTGTTGTTGTACCAAGACTTCACTGAAACAATCTACTTTTGTCCTATGGCAGGAGAAACGTCTCTGCAGCGAAATGGGGTTACCCCCACCCTTTTACCTTAAGATGGAAGAAGTCATCTCAATTGAAATCTTCAGCGGCAATGTCACCAAAAGATCAGATGCCCATCACCTGTTCAAGATTGAACCTAGTAAAATTGACAGGGTCTACGACATGCTTGTGAAAAGGGGATTGCACAGTCTTGATGTGATGGGCATGCCTGGCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031056 GO:0031058 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0035065 GO:0035066 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901983 GO:1901985 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905269 GO:2000112 GO:2000756 GO:2000758 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding ZZ

Protein Analysis

122

Amino Acids

14.0

Weight (kDa)

6.41

Isoelectric Point (pI)

71.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017385)

Species	Orthologous Gene IDs
malus_domestica	MD09G1125900.v1.1
pyrus_communis	pycom09g05000
rosa_chinensis	RchiOBHm_Chr1g0367451 RchiOBHm_Chr1g0367461 RchiOBHm_Chr7g0232701
rosa_multiflora	Rmu_sc0023109.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005270 Rroxscaffold_1G00071670
rosa_samantha	Rh3DG331300 Rh4AG082800 Rh5DG469600 Rh7AG348500 Rh7AG348600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	306
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	1 cut(s)	31
AcuI	CTGAAG	2 cut(s)	60, 217
AfaI	GTAC	2 cut(s)	78, 112
AfiI	CCNNNNNNNGG	2 cut(s)	151, 205
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	3 cut(s)	227, 277, 284
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	31
ApeKI	GCWGC	1 cut(s)	168
AsuHPI	GGTGA	2 cut(s)	238, 260
BarI	GAAGNNNNNNTAC	2 cut(s)	103, 135
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	3 cut(s)	199, 273, 343
BciT130I	CCWGG	1 cut(s)	360
BclI	TGATCA	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	166
BfrI	CTTAAG	1 cut(s)	200
BisI	GCNGC	2 cut(s)	169, 238
BlsI	GCNGC	2 cut(s)	170, 239
Bme1390I	CCNGG	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	76
BsaBI	GATNNNNATC	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 205
Bse3DI	GCAATG	1 cut(s)	247
Bse8I	GATNNNNATC	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	360
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	2 cut(s)	151, 205
BseMI	GCAATG	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	180
BslI	CCNNNNNNNGG	2 cut(s)	151, 205
BsmAI	GTCTC	1 cut(s)	167
BsmBI	CGTCTC	1 cut(s)	167
Bsp143I	GATC	3 cut(s)	23, 60, 254
BspACI	CCGC	1 cut(s)	237
BspMAI	CTGCAG	1 cut(s)	170
BspPI	GGATC	1 cut(s)	31
BspTI	CTTAAG	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	247
BssMI	GATC	3 cut(s)	23, 60, 254
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	2 cut(s)	36, 338
BstAFI	CTTAAG	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	356
BstEII	GGTNACC	1 cut(s)	180
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstKTI	GATC	3 cut(s)	26, 63, 257
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	3 cut(s)	23, 60, 254
BstMWI	GCNNNNNNNGC	1 cut(s)	360
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	2 cut(s)	316, 358
BstPI	GGTNACC	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	356
Csp6I	GTAC	2 cut(s)	77, 111
CviAII	CATG	4 cut(s)	64, 74, 313, 355
CviJI	RGCY	1 cut(s)	44
CviKI_1	RGCY	1 cut(s)	44
CviQI	GTAC	2 cut(s)	77, 111
DpnI	GATC	3 cut(s)	25, 62, 256
DpnII	GATC	3 cut(s)	23, 60, 254
Eco57I	CTGAAG	2 cut(s)	60, 217
Eco91I	GGTNACC	1 cut(s)	180
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	358
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	4 cut(s)	67, 77, 316, 358
FaiI	YATR	7 cut(s)	8, 21, 65, 75, 148, 314, 356
FatI	CATG	4 cut(s)	63, 73, 312, 354
FbaI	TGATCA	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	2 cut(s)	169, 238
Fsp4HI	GCNGC	2 cut(s)	169, 238
FspBI	CTAG	1 cut(s)	288
GluI	GCNGC	2 cut(s)	169, 238
Hin1II	CATG	4 cut(s)	67, 77, 316, 358
HphI	GGTGA	2 cut(s)	238, 260
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	3 cut(s)	28, 40, 259
Hpy188III	TCNNGA	2 cut(s)	277, 341
Hpy8I	GTNNAC	1 cut(s)	307
HpyCH4III	ACNGT	2 cut(s)	36, 338
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	2 cut(s)	168, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	360
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	4 cut(s)	67, 77, 316, 358
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	3 cut(s)	23, 60, 254
LpnPI	CCDG	4 cut(s)	137, 284, 286, 345
Lsp1109I	GCAGC	1 cut(s)	180
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	2 cut(s)	180, 244
MalI	GATC	3 cut(s)	25, 62, 256
MboI	GATC	3 cut(s)	23, 60, 254
MboII	GAAGA	3 cut(s)	66, 221, 223
MfeI	CAATTG	1 cut(s)	222
MluCI	AATT	2 cut(s)	222, 294
MseI	TTAA	2 cut(s)	87, 201
MslI	CAYNNNNRTG	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	237
MspCI	CTTAAG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	360
MunI	CAATTG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	360
NdeII	GATC	3 cut(s)	23, 60, 254
NlaIII	CATG	4 cut(s)	67, 77, 316, 358
NmuCI	GTSAC	1 cut(s)	244
NspI	RCATGY	2 cut(s)	316, 358
PaeI	GCATGC	1 cut(s)	358
PflFI	GACNNNGTC	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	170, 239
Psp6I	CCWGG	1 cut(s)	358
PspEI	GGTNACC	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	358
PstI	CTGCAG	1 cut(s)	170
PsyI	GACNNNGTC	1 cut(s)	302
RsaI	GTAC	2 cut(s)	78, 112
RsaNI	GTAC	2 cut(s)	77, 111
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	87, 201
SatI	GCNGC	2 cut(s)	169, 238
Sau3AI	GATC	3 cut(s)	23, 60, 254
ScrFI	CCNGG	1 cut(s)	360
SetI	ASST	6 cut(s)	46, 82, 163, 201, 273, 289
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	2 cut(s)	91, 200
SmoI	CTYRAG	2 cut(s)	91, 200
SphI	GCATGC	1 cut(s)	358
Sse9I	AATT	2 cut(s)	222, 294
SsiI	CCGC	1 cut(s)	237
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	358
TaaI	ACNGT	2 cut(s)	36, 338
TaiI	ACGT	1 cut(s)	163
TasI	AATT	2 cut(s)	222, 294
TauI	GCSGC	1 cut(s)	240
Tru1I	TTAA	2 cut(s)	87, 201
Tru9I	TTAA	2 cut(s)	87, 201
TscAI	CASTG	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	168
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	129
Tth111I	GACNNNGTC	1 cut(s)	302
Vha464I	CTTAAG	1 cut(s)	200
XagI	CCTNNNNNAGG	1 cut(s)	149
XceI	RCATGY	2 cut(s)	316, 358
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.