RchiOBHm_Chr1g0369551

Glycosyl transferase family 64 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0013433
Physical Location & Seq
Forward (+)
59347593 .. 59351202
3610 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 975 bp
ATGAACCGGCGAGGGGTTCAGAGGTTCCGGCAGGCGCTGATCTCGACCGTCGGATCGGTGAAGATTAAGCTCGTGCTCGGATTCTGCATCGGCTTTACTGTCATCGCTCTCGCCGGCCGCGCTTCGGAGTTTATGGGATGGACGAGTCACACTGCTTCGCTGGAACGGTTCTCCGGTTCGAGGAAAGGATATGCTATTGTAATGAACACATGGAAGAGATACGATCTTTTGAAGCAGTCAATTTCTCACTATTCCAGGTGTCCACGGCTTGATTCGATACATATTGTGTGGAGTGAGCCAAATCCTCCATCAGATTCTCTGAAAAAATTTCTAAACCACATTATAGAGTTGAACACTAGAGATGGACGACAAGTTAAATTGAAATTTGATATCAATAAGGAAGACAGTTTGAACAACAGATTTAAAGAAATTCCAGATTTGGAAACAGATGCTGTCTTCTCTATCGATGATGATGTCATATTCCCTTGCTCTTCTGTAGAATTTGCTTTCGATGTTTGGCAAAGTGCATCAGATACTATGGTTGGCTTTGTGCCTCGTATGCACTGGGTTGATCCCACGAATGGTCATATGGATCATTACATATATGGTGGATGGTGGTCGGTTTGGTGGACTGGTACATACAGTATGGTACTCTCTAAGGCAGCCTTCTTCCACAAAAAGTACCTAAGAATCTACACAAATGAAATGCCAGCATCAATCAAAGACTTTATAACCAAGAACAGGAACTGTGAAGACATTGCAATGTCTTTTCTTGTAGCAAATGTGACTGGTGCTCCCCCTATATGGGTTAAAGGTAAGATATTTGAGATTGGATCAACTGGAATCAGTAGCATGGGAGGCCATACTGAAAAAAGAACCCACTGCGTTGATAGATTCGCTGCTGAGTTTGGGCGAATGCCATTGGTACCTACTTCTGTGAAAGCTGTTGACAGTCGCAACATCTGGTTTTGGTGA

Protein Analysis

324

Amino Acids

37.07

Weight (kDa)

9.21

Isoelectric Point (pI)

38.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_64 PF09258 64 - 317 7.1e-79 Glycosyl transferase family 64 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013433)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55830
fragaria_vesca FvH4_7g24130
malus_domestica MD01G1148500.v1.1 MD07G1215500.v1.1
prunus_persica Prupe.2G247400_v2.0.a1 Prupe.2G247400_v2.0.a1
pyrus_communis pycom01g16710 pycom07g19780
rosa_chinensis RchiOBHm_Chr1g0369551
rosa_laevigata RLG00000027119
rosa_multiflora Rmu_sc0001154.1_g000003
rosa_roxburghii Rroxscaffold_4G00287530
rosa_rugosa Rorug01G0351100
rosa_samantha Rh1AG359400 Rh1BG323100 Rh1CG336400 Rh1DG353900
rosa_wichuraiana Rw1G031670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 731
Acc65I GGTACC 1 cut(s) 925
AccB1I GGYRCC 1 cut(s) 925
AccII CGCG 1 cut(s) 120
AciI CCGC 1 cut(s) 118
AclWI GGATC 4 cut(s) 61, 566, 600, 841
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 4 cut(s) 326, 383, 429, 500
AfaI GTAC 4 cut(s) 637, 651, 683, 927
AfiI CCNNNNNNNGG 7 cut(s) 13, 124, 180, 581, 741, 804, 805
AgsI TTSAA 4 cut(s) 232, 352, 382, 412
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 2 cut(s) 70, 944
AluI AGCT 2 cut(s) 70, 944
Alw21I GWGCWC 2 cut(s) 78, 796
AlwI GGATC 4 cut(s) 61, 566, 600, 841
AlwNI CAGNNNCTG 3 cut(s) 37, 452, 747
AoxI GGCC 2 cut(s) 115, 859
ApeKI GCWGC 2 cut(s) 662, 899
ApoI RAATTY 4 cut(s) 326, 383, 429, 500
Asp718I GGTACC 1 cut(s) 925
AspLEI GCGC 2 cut(s) 37, 122
AsuHPI GGTGA 1 cut(s) 70
BaeI ACNNNNGTAYC 2 cut(s) 525, 558
BanI GGYRCC 1 cut(s) 925
BauI CACGAG 1 cut(s) 71
BbsI GAAGAC 3 cut(s) 408, 448, 759
Bbv12I GWGCWC 2 cut(s) 78, 796
BbvI GCAGC 2 cut(s) 674, 886
BccI CCATC 4 cut(s) 132, 316, 356, 606
BceAI ACGGC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 256
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 495
BfoI RGCGCY 1 cut(s) 38
BisI GCNGC 3 cut(s) 118, 663, 900
BlsI GCNGC 3 cut(s) 119, 664, 901
Bme1390I CCNGG 1 cut(s) 256
BmiI GGNNCC 2 cut(s) 26, 927
BmrFI CCNGG 1 cut(s) 256
BmrI ACTGGG 1 cut(s) 574
BmsI GCATC 4 cut(s) 96, 439, 536, 722
BmuI ACTGGG 1 cut(s) 574
BpiI GAAGAC 3 cut(s) 408, 448, 759
Bsa29I ATCGAT 1 cut(s) 465
BsaJI CCNNGG 1 cut(s) 263
BsaWI WCCGGW 1 cut(s) 173
BsaXI ACNNNNNCTCC 2 cut(s) 778, 808
Bsc4I CCNNNNNNNGG 7 cut(s) 13, 124, 180, 581, 741, 804, 805
Bse118I RCCGGY 2 cut(s) 6, 113
Bse1I ACTGG 4 cut(s) 569, 637, 793, 844
Bse3DI GCAATG 2 cut(s) 756, 768
BseBI CCWGG 1 cut(s) 256
BseCI ATCGAT 1 cut(s) 465
BseDI CCNNGG 1 cut(s) 263
BseGI GGATG 2 cut(s) 143, 617
BseLI CCNNNNNNNGG 7 cut(s) 13, 124, 180, 581, 741, 804, 805
BseMI GCAATG 2 cut(s) 756, 768
BseMII CTCAG 1 cut(s) 894
BseNI ACTGG 4 cut(s) 569, 637, 793, 844
BseX3I CGGCCG 1 cut(s) 115
BseXI GCAGC 2 cut(s) 674, 886
Bsh1236I CGCG 1 cut(s) 120
Bsh1285I CGRYCG 2 cut(s) 48, 118
BshFI GGCC 2 cut(s) 117, 861
BshNI GGYRCC 1 cut(s) 925
BshVI ATCGAT 1 cut(s) 465
BsiEI CGRYCG 2 cut(s) 48, 118
BsiHKAI GWGCWC 2 cut(s) 78, 796
BsiSI CCGG 4 cut(s) 7, 28, 114, 174
BslI CCNNNNNNNGG 7 cut(s) 13, 124, 180, 581, 741, 804, 805
BsmI GAATGC 1 cut(s) 921
BsnI GGCC 2 cut(s) 117, 861
Bsp1286I GDGCHC 2 cut(s) 78, 796
Bsp143I GATC 6 cut(s) 39, 53, 223, 571, 592, 833
BspACI CCGC 1 cut(s) 118
BspANI GGCC 2 cut(s) 117, 861
BspCNI CTCAG 1 cut(s) 895
BspDI ATCGAT 1 cut(s) 465
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 26, 927
BspPI GGATC 4 cut(s) 61, 566, 600, 841
BspQI GCTCTTC 1 cut(s) 496
BspT107I GGYRCC 1 cut(s) 925
BsrDI GCAATG 2 cut(s) 756, 768
BsrFI RCCGGY 2 cut(s) 6, 113
BsrI ACTGG 4 cut(s) 569, 637, 793, 844
BssAI RCCGGY 2 cut(s) 6, 113
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 6 cut(s) 39, 53, 223, 571, 592, 833
BssSI CACGAG 1 cut(s) 71
Bst2BI CACGAG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 7 cut(s) 49, 100, 168, 407, 644, 749, 953
Bst6I CTCTTC 2 cut(s) 209, 496
BstC8I GCNNGC 3 cut(s) 33, 115, 711
BstDEI CTNAG 3 cut(s) 657, 686, 903
BstDSI CCRYGG 1 cut(s) 263
BstF5I GGATG 2 cut(s) 143, 617
BstFNI CGCG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 2 cut(s) 37, 122
BstKTI GATC 6 cut(s) 42, 56, 226, 574, 595, 836
BstMBI GATC 6 cut(s) 39, 53, 223, 571, 592, 833
BstMCI CGRYCG 2 cut(s) 48, 118
BstMWI GCNNNNNNNGC 3 cut(s) 119, 559, 858
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 254
BstSFI CTRYAG 1 cut(s) 495
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 674, 886
BstV2I GAAGAC 3 cut(s) 408, 448, 759
BstZI CGGCCG 1 cut(s) 115
Bsu15I ATCGAT 1 cut(s) 465
BsuRI GGCC 2 cut(s) 117, 861
BsuTUI ATCGAT 1 cut(s) 465
BtgI CCRYGG 1 cut(s) 263
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 2 cut(s) 143, 617
BtsI GCAGTG 2 cut(s) 150, 880
BtsIMutI CAGTG 3 cut(s) 150, 562, 880
Cac8I GCNNGC 3 cut(s) 33, 115, 711
CaiI CAGNNNCTG 3 cut(s) 37, 452, 747
CfoI GCGC 2 cut(s) 37, 122
Cfr10I RCCGGY 2 cut(s) 6, 113
ClaI ATCGAT 1 cut(s) 465
Csp6I GTAC 4 cut(s) 636, 650, 682, 926
CviAII CATG 2 cut(s) 210, 853
CviJI RGCY 9 cut(s) 70, 93, 117, 268, 298, 546, 665, 861, 944
CviKI_1 RGCY 9 cut(s) 70, 93, 117, 268, 298, 546, 665, 861, 944
CviQI GTAC 4 cut(s) 636, 650, 682, 926
DdeI CTNAG 3 cut(s) 657, 686, 903
DpnI GATC 6 cut(s) 41, 55, 225, 573, 594, 835
DpnII GATC 6 cut(s) 39, 53, 223, 571, 592, 833
DraI TTTAAA 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 115
EagI CGGCCG 1 cut(s) 115
Eam1104I CTCTTC 2 cut(s) 209, 496
EarI CTCTTC 2 cut(s) 209, 496
EclXI CGGCCG 1 cut(s) 115
Eco32I GATATC 1 cut(s) 391
Eco52I CGGCCG 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 254
EcoRV GATATC 1 cut(s) 391
FaeI CATG 2 cut(s) 213, 856
FalI AAGNNNNNCTT 2 cut(s) 650, 682
FatI CATG 2 cut(s) 209, 852
FauNDI CATATG 1 cut(s) 588
Fnu4HI GCNGC 3 cut(s) 118, 663, 900
FokI GGATG 2 cut(s) 150, 624
Fsp4HI GCNGC 3 cut(s) 118, 663, 900
FspBI CTAG 1 cut(s) 357
GlaI GCGC 2 cut(s) 36, 121
GluI GCNGC 3 cut(s) 118, 663, 900
HaeII RGCGCY 1 cut(s) 38
HaeIII GGCC 2 cut(s) 117, 861
HapII CCGG 4 cut(s) 7, 28, 114, 174
HhaI GCGC 2 cut(s) 37, 122
Hin1II CATG 2 cut(s) 213, 856
Hin6I GCGC 2 cut(s) 35, 120
HinP1I GCGC 2 cut(s) 35, 120
HincII GTYRAC 1 cut(s) 949
HindII GTYRAC 1 cut(s) 949
HinfI GANTC 7 cut(s) 81, 145, 272, 314, 690, 843, 894
HpaII CCGG 4 cut(s) 7, 28, 114, 174
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 3 cut(s) 263, 630, 949
Hpy188I TCNGA 7 cut(s) 21, 53, 80, 127, 313, 321, 532
Hpy188III TCNNGA 2 cut(s) 43, 434
Hpy8I GTNNAC 3 cut(s) 263, 630, 949
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 676
HpyCH4III ACNGT 7 cut(s) 49, 100, 168, 407, 644, 749, 953
HpyCH4V TGCA 4 cut(s) 87, 527, 562, 761
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 559, 858
HpyF3I CTNAG 3 cut(s) 657, 686, 903
Hsp92II CATG 2 cut(s) 213, 856
HspAI GCGC 2 cut(s) 35, 120
KpnI GGTACC 1 cut(s) 929
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 6 cut(s) 39, 53, 223, 571, 592, 833
LguI GCTCTTC 1 cut(s) 496
LmnI GCTCC 1 cut(s) 799
Lsp1109I GCAGC 2 cut(s) 674, 886
LweI GCATC 4 cut(s) 96, 439, 536, 722
MaeI CTAG 1 cut(s) 357
MaeIII GTNAC 2 cut(s) 146, 784
MalI GATC 6 cut(s) 41, 55, 225, 573, 594, 835
MboI GATC 6 cut(s) 39, 53, 223, 571, 592, 833
MboII GAAGA 7 cut(s) 73, 226, 413, 448, 483, 661, 764
MhlI GDGCHC 2 cut(s) 78, 796
MluCI AATT 6 cut(s) 240, 326, 377, 383, 429, 500
MlyI GAGTC 1 cut(s) 154
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 6 cut(s) 5, 15, 174, 315, 564, 851
MroNI GCCGGC 1 cut(s) 113
MseI TTAA 4 cut(s) 66, 375, 423, 810
MslI CAYNNNNRTG 1 cut(s) 761
MspI CCGG 4 cut(s) 7, 28, 114, 174
MspR9I CCNGG 1 cut(s) 256
Mva1269I GAATGC 1 cut(s) 921
MvaI CCWGG 1 cut(s) 256
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 119, 559, 858
NaeI GCCGGC 1 cut(s) 115
NdeI CATATG 1 cut(s) 588
NdeII GATC 6 cut(s) 39, 53, 223, 571, 592, 833
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 2 cut(s) 213, 856
NlaIV GGNNCC 2 cut(s) 26, 927
NmuCI GTSAC 2 cut(s) 146, 784
PciSI GCTCTTC 1 cut(s) 496
PctI GAATGC 1 cut(s) 921
PdiI GCCGGC 1 cut(s) 115
PfeI GAWTC 6 cut(s) 81, 272, 314, 690, 843, 894
PkrI GCNGC 3 cut(s) 119, 664, 901
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
PsiI TTATAA 1 cut(s) 731
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 26, 927
PstNI CAGNNNCTG 3 cut(s) 37, 452, 747
RsaI GTAC 4 cut(s) 637, 651, 683, 927
RsaNI GTAC 4 cut(s) 636, 650, 682, 926
RseI CAYNNNNRTG 1 cut(s) 761
SapI GCTCTTC 1 cut(s) 496
SaqAI TTAA 4 cut(s) 66, 375, 423, 810
SatI GCNGC 3 cut(s) 118, 663, 900
Sau3AI GATC 6 cut(s) 39, 53, 223, 571, 592, 833
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 2 cut(s) 78, 796
SetI ASST 7 cut(s) 26, 72, 260, 687, 817, 931, 946
SfaNI GCATC 4 cut(s) 96, 439, 536, 722
SfcI CTRYAG 1 cut(s) 495
SmiMI CAYNNNNRTG 1 cut(s) 761
Sse9I AATT 6 cut(s) 240, 326, 377, 383, 429, 500
SsiI CCGC 1 cut(s) 118
SspMI CTAG 1 cut(s) 357
StyD4I CCNGG 1 cut(s) 254
TaaI ACNGT 7 cut(s) 49, 100, 168, 407, 644, 749, 953
TaqI TCGA 5 cut(s) 44, 179, 275, 465, 510
TasI AATT 6 cut(s) 240, 326, 377, 383, 429, 500
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 6 cut(s) 81, 272, 314, 690, 843, 894
Tru1I TTAA 4 cut(s) 66, 375, 423, 810
Tru9I TTAA 4 cut(s) 66, 375, 423, 810
TscAI CASTG 3 cut(s) 157, 569, 887
TseFI GTSAC 2 cut(s) 146, 784
TseI GCWGC 2 cut(s) 662, 899
Tsp45I GTSAC 2 cut(s) 146, 784
TspDTI ATGAA 3 cut(s) 17, 218, 717
TspRI CASTG 3 cut(s) 157, 569, 887
XapI RAATTY 4 cut(s) 326, 383, 429, 500
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.