Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005831

Physical Location & Seq

Genomic Coordinates Reverse (-)

60165721 .. 60171884

Gene Structure 6164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2607 bp

ATGGCGCGCTCAGCTCCAATTCTCAACCGCGACACCTCGCACTTGCTCTTCACCTTCAAACCTCCCCACTCTCCCTTCCACTCTCTCACTTCTCTCCGCCTCACCAAGCCTACTCTCCTCCCTACTCTTTTATCTTCTTCTTCTTCGCCTGGTTCTTGCATCACGCGCGTCACCACCGTCCCGGTAGAGTACGCGCCGCCGGCTCCCGAATTCGAGTTCGACAGCGAGCTCGCGCGCCTCAAGTCTCTCCGCTCCCGCCTCGCCGGCGCCAAATCGCTACGCGCCAAAACCAGAGTGATCGACGGAGATTCCAGAGTGAAAAGATTCTTCAATTCCGGCAACAACCGAGTCTTCTCTGCGGTTTTGGCCTCGCTGGATTTGAGTCCGACCGAGTTGTTCTTGTTCAAGTGCCTCGTCGCCGCCGGCCAAGAGCACGTGCTCGGCTGGGGGTTTGAGTTCGCCGAGAGCGAGGCGGAGCCGGCCAGGAGCCCCGTGAAGACCGCGTTTTACGCCATTGTAGAAATGATTGAGAAATTGGATGTGAGCAGTGACGGTTCGGGGAAGAAGAAGAAGAAGAAGGTTCGGTTTGCTTTGAATGATGAAGATTTTGAGGACTTGAAGAAGCTATTGAAGAATTTGGGAGAGGTTGAACAGTTCTATAACTGCATTGGAGGAGTGATTGGATATCAGATAACAGTAATGGAGCTTCTAGCGAAATCGAGAGTTGAAATGCAGACTACAAATTGGTATGACAAAATACAAGAGCAGATGGAATGCCAGTTTTTGGAAATTCATGCACCTAGTGGACTTGATCTTTCTGAAAATGCAGAATATGCAGCTCAAGCTGCTCTATGGGGAATTCAGGGTTTGCCAGACCTAGGTGAAATTTATCCTCTGGGAGGCTCCGCCGACAGGCTTGGTTTGGTTGATCCTGATACAGGTGAATGTCTCCCAGCTGCAATGCTTCCGTATTGTGGGCGGACTTTATTGGAAGGTCTTATAAGAGATCTTCAGGCTAGGGAGTTTTTGTACTTCAAGATTTTTGGGAAGCAGTGCATCACTCCTGTTGCTATCATGACAAGTGCTGCAAAGAACAACCATGAACACATAACTTCTCTTTGTGAAAAACTTGAATGGTTTAAGAGAGGTCGATCAAGTTTCCAACTTTTCGAACAGCCCCTTGTTCCAGCTGTTAGTGCAGAGGATGGGCAATGGATAATCAAGAAACCTTTTGCTCCCATTTGCAAGCCTGGTGGTCATGGTGTGATATGGAAACTTGCTTATGATAAAGGCATTTTCCAATGGTTTTATGATCATGGACGTAAAGGTGCAACTGTACGACAAGTTAGCAATGTTGTGGCCGCTACAGATTTGACTCTCTTGGCACTAGCAGGGATTGGTTTACACCATGGGAAGAAACTGGGGTTTGCTTCCTGTAAGAGGAACTCGGGGGCTACAGAAGGAATTAATGTTCTAATGGAGAAGAAAAATCTGGATGGAAGGTGGGCATATGGTTTGTCTTGCATTGAATACACAGAGTTTGATAAATTTGGGATAGCAGATGGACCTCATTCTCGTAATAGGTTGCAGGCAGAGTTCCCTGCCAATACAAACATTTTGTATGTAGACTTACCTTCCGCGGAGTTGGTGGGTTCCAGTAAGAATACAGACAGCTTACCTGGCATGGTGTTAAATGTTAAAAAGGCGATATCATTTGTAGACAATTTTGGAAATCCACACAGTGTTCCTGGTGGCAGGCTTGAATGCACGATGCAAAATATTGCCGACAATTTTCTTAATACACATCCATCTAGAGATTATAAAGGCATTGAAGATAAGCTTGATACCTTTATTGTTTTTAATAAAAGAAGACGGGTTACATCATCTACTAAGAGGAAAAGAAGGCATGCAGACAAATCTTTACACCAAACTCCGGATGGTTCACTGTTGGATATCCTAAGAAATGCTCATGACCTTCTGTCTCAGTGTGATATTCAACTTCCTGAGATTGGAAGTAATGACAAGTATCTAAATTCTGGACCACCATTTCTTATTCTTCTGCACCCTGCTCTTGGCCCCCTTTGGGAGGTCACCAGACAAAAGTTCTGTGGAGGCTCAATATGCAAAGGCTCTGAGTTACAAGTAGAGGTCGCAGAGTTCCTGTGGAGGAATGTTCAGCTTGATGGAAGCCTGATCATAGAGGCTGATAATGTTATGGGCTCAAGTAGGGTTGGTGAAGTTGGTGAACCTATTTTACAATATGGACACAGGTGTGGAAGGTGTAAATTACAGAACGTAAGAGTATTGAATGAGGGAATTGACTGGAATTTTGAAGACAATGTCTATTGGAAGCATGTTGTGCAGCGCATCCAAGCATGTAAGGTTGTACTGCATGGAAATGCTGAGTTTGAGGCAACTGATGTTATCTTAAAGGGAAATCATATATTTGAAGTTCCAAATGGCTACAAAATGAAGATCACGCCAGGAGATTCAGGTTTAGCGATCGGATTAGATCCTATCGCAGAGAATATGATGGACAGTGGAAGCTGGTATTGGAAGTACGGGATCAAGGACACAAATATTCAGTTGGAATTGGTAGAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006629 GO:0006725 GO:0006790 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009225 GO:0009226 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046505 GO:0046506 GO:0051748 GO:0055086 GO:0070569 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGP

Protein Analysis

868

Amino Acids

96.56

Weight (kDa)

6.9

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hexapep_UGP3_C	PF25441	702 - 865	5.6e-74	UGP3-like, C-terminal hexapeptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56040
fragaria_vesca	FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830 FvH4_7g24830
malus_domestica	MD01G1156200.v1.1 MD01G1156300.v1.1 MD07G1224900.v1.1
prunus_persica	Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1 Prupe.2G253500_v2.0.a1
pyrus_communis	pycom07g20360
rosa_chinensis	RchiOBHm_Chr1g0370701
rosa_laevigata	RLG00000027016
rosa_multiflora	Rmu_sc0004550.1_g000012
rosa_roxburghii	Rroxscaffold_4G00286290
rosa_rugosa	Rorug01G0358600
rosa_samantha	Rh1AG368300 Rh1BG331700 Rh1CG345700 Rh1DG363100
rosa_wichuraiana	Rw1G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1001, 1821
AccB1I	GGYRCC	1 cut(s)	266
AccB7I	CCANNNNNTGG	1 cut(s)	784
AccBSI	CCGCTC	1 cut(s)	252
AccI	GTMKAC	2 cut(s)	1626, 1719
AccIII	TCCGGA	1 cut(s)	1933
AclWI	GGATC	3 cut(s)	923, 2507, 2573
AcoI	YGGCCR	3 cut(s)	424, 480, 1359
AcsI	RAATTY	8 cut(s)	209, 634, 789, 858, 885, 1547, 2032, 2326
AcuI	CTGAAG	1 cut(s)	995
AcvI	CACGTG	1 cut(s)	436
AcyI	GRCGYC	1 cut(s)	267
AdeI	CACNNNGTG	2 cut(s)	803, 1742
AfaI	GTAC	5 cut(s)	191, 1031, 1338, 2388, 2561
AhdI	GACNNNNNGTC	1 cut(s)	1978
AjnI	CCWGG	6 cut(s)	148, 482, 1249, 1678, 1747, 2482
AjuI	GAANNNNNNNTTGG	2 cut(s)	2536, 2568
AleI	CACNNNNGTG	1 cut(s)	2271
AloI	GAACNNNNNNTCC	2 cut(s)	1455, 1487
Alw21I	GWGCWC	3 cut(s)	231, 435, 441
Alw26I	GTCTC	3 cut(s)	249, 953, 1986
AlwI	GGATC	3 cut(s)	923, 2507, 2573
Ama87I	CYCGRG	1 cut(s)	1447
Aor13HI	TCCGGA	1 cut(s)	1933
AoxI	GGCC	5 cut(s)	366, 424, 480, 1359, 2074
ApeKI	GCWGC	5 cut(s)	836, 845, 956, 1085, 2362
ApoI	RAATTY	8 cut(s)	209, 634, 789, 858, 885, 1547, 2032, 2326
ArsI	GACNNNNNNTTYG	2 cut(s)	2312, 2344
AseI	ATTAAT	1 cut(s)	1467
Asp700I	GAANNNNTTC	1 cut(s)	323
AspA2I	CCTAGG	1 cut(s)	877
AspLEI	GCGC	9 cut(s)	7, 9, 168, 196, 235, 237, 269, 284, 2367
AspS9I	GGNCC	3 cut(s)	1565, 2039, 2075
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	8 cut(s)	43, 94, 163, 893, 953, 2083, 2246, 2255
AsuII	TTCGAA	1 cut(s)	1170
AvaI	CYCGRG	1 cut(s)	1447
AvaII	GGWCC	2 cut(s)	1565, 2039
AvrII	CCTAGG	1 cut(s)	877
BanI	GGYRCC	1 cut(s)	266
BanII	GRGCYC	3 cut(s)	231, 491, 2222
BarI	GAAGNNNNNNTAC	4 cut(s)	690, 722, 1861, 1893
BbrPI	CACGTG	1 cut(s)	436
BbsI	GAAGAC	4 cut(s)	343, 503, 1876, 2340
Bbv12I	GWGCWC	3 cut(s)	231, 435, 441
BbvI	GCAGC	5 cut(s)	832, 848, 943, 1072, 2374
BccI	CCATC	8 cut(s)	763, 1199, 1490, 1556, 1816, 1931, 2177, 2527
BciT130I	CCWGG	6 cut(s)	150, 484, 1251, 1680, 1749, 2484
BclI	TGATCA	2 cut(s)	1312, 2193
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	3 cut(s)	249, 953, 1986
BfaI	CTAG	6 cut(s)	710, 801, 878, 1017, 1388, 1812
BfmI	CTRYAG	2 cut(s)	1365, 1455
BfoI	RGCGCY	1 cut(s)	270
BglI	GCCNNNNNGGC	1 cut(s)	264
BglII	AGATCT	1 cut(s)	1006
BisI	GCNGC	8 cut(s)	197, 420, 837, 846, 957, 1086, 1362, 2363
BlnI	CCTAGG	1 cut(s)	877
BlpI	GCTNAGC	1 cut(s)	10
BlsI	GCNGC	8 cut(s)	198, 421, 838, 847, 958, 1087, 1363, 2364
Bme1390I	CCNGG	7 cut(s)	150, 182, 484, 1251, 1680, 1749, 2484
Bme18I	GGWCC	2 cut(s)	1565, 2039
BmeRI	GACNNNNNGTC	1 cut(s)	1978
BmeT110I	CYCGRG	1 cut(s)	1447
BmgT120I	GGNCC	3 cut(s)	1565, 2039, 2075
BmiI	GGNNCC	7 cut(s)	204, 268, 477, 488, 904, 1654, 2077
BmrFI	CCNGG	7 cut(s)	150, 182, 484, 1251, 1680, 1749, 2484
BmrI	ACTGGG	1 cut(s)	1430
BmsI	GCATC	4 cut(s)	168, 1065, 1761, 2376
BmuI	ACTGGG	1 cut(s)	1430
BpiI	GAAGAC	4 cut(s)	343, 503, 1876, 2340
Bpu1102I	GCTNAGC	1 cut(s)	10
Bpu14I	TTCGAA	1 cut(s)	1170
BpuEI	CTTGAG	3 cut(s)	224, 825, 2206
BpuMI	CCSGG	1 cut(s)	182
BsaAI	YACGTR	1 cut(s)	436
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	877, 1408, 1638
BsaWI	WCCGGW	1 cut(s)	1933
BsaXI	ACNNNNNCTCC	2 cut(s)	1013, 1043
Bse118I	RCCGGY	4 cut(s)	199, 263, 422, 478
Bse1I	ACTGG	4 cut(s)	778, 1425, 1656, 2327
Bse3DI	GCAATG	3 cut(s)	966, 1217, 1357
BseAI	TCCGGA	1 cut(s)	1933
BseBI	CCWGG	6 cut(s)	150, 484, 1251, 1680, 1749, 2484
BseDI	CCNNGG	3 cut(s)	877, 1408, 1638
BseGI	GGATG	6 cut(s)	544, 1210, 1501, 1804, 1942, 2367
BseMI	GCAATG	3 cut(s)	966, 1217, 1357
BseMII	CTCAG	5 cut(s)	24, 1995, 1997, 2124, 2394
BseNI	ACTGG	4 cut(s)	778, 1425, 1656, 2327
BsePI	GCGCGC	2 cut(s)	5, 233
BseRI	GAGGAG	2 cut(s)	107, 687
BseXI	GCAGC	5 cut(s)	832, 848, 943, 1072, 2374
BseYI	CCCAGC	2 cut(s)	444, 952
BsgI	GTGCAG	3 cut(s)	1218, 2045, 2381
Bsh1285I	CGRYCG	2 cut(s)	390, 2505
BshFI	GGCC	5 cut(s)	368, 426, 482, 1361, 2076
BshNI	GGYRCC	1 cut(s)	266
BsiEI	CGRYCG	2 cut(s)	390, 2505
BsiHKAI	GWGCWC	3 cut(s)	231, 435, 441
BsiHKCI	CYCGRG	1 cut(s)	1447
BsiSI	CCGG	7 cut(s)	182, 200, 264, 336, 423, 479, 1934
BslFI	GGGAC	1 cut(s)	164
BsmAI	GTCTC	3 cut(s)	249, 953, 1986
BsmFI	GGGAC	1 cut(s)	164
BsmI	GAATGC	2 cut(s)	779, 1769
BsnI	GGCC	5 cut(s)	368, 426, 482, 1361, 2076
BsoBI	CYCGRG	1 cut(s)	1447
Bsp119I	TTCGAA	1 cut(s)	1170
Bsp1286I	GDGCHC	5 cut(s)	231, 435, 441, 491, 2222
Bsp13I	TCCGGA	1 cut(s)	1933
Bsp1720I	GCTNAGC	1 cut(s)	10
Bsp19I	CCATGG	1 cut(s)	1408
BspANI	GGCC	5 cut(s)	368, 426, 482, 1361, 2076
BspCNI	CTCAG	5 cut(s)	23, 1996, 1996, 2125, 2395
BspEI	TCCGGA	1 cut(s)	1933
BspHI	TCATGA	2 cut(s)	1074, 1969
BspLI	GGNNCC	7 cut(s)	204, 268, 477, 488, 904, 1654, 2077
BspPI	GGATC	3 cut(s)	923, 2507, 2573
BspQI	GCTCTTC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	1170
BspT107I	GGYRCC	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	252
BsrDI	GCAATG	3 cut(s)	966, 1217, 1357
BsrFI	RCCGGY	4 cut(s)	199, 263, 422, 478
BsrI	ACTGG	4 cut(s)	778, 1425, 1656, 2327
BssAI	RCCGGY	4 cut(s)	199, 263, 422, 478
BssECI	CCNNGG	3 cut(s)	877, 1408, 1638
BssHII	GCGCGC	2 cut(s)	5, 233
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	2 cut(s)	877, 1408
Bst2UI	CCWGG	6 cut(s)	150, 484, 1251, 1680, 1749, 2484
Bst4CI	ACNGT	8 cut(s)	178, 554, 654, 697, 1336, 1742, 1947, 2540
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	267
BstAPI	GCANNNNNTGC	2 cut(s)	833, 2359
BstBAI	YACGTR	1 cut(s)	436
BstBI	TTCGAA	1 cut(s)	1170
BstDEI	CTNAG	7 cut(s)	10, 1890, 1958, 1983, 2004, 2133, 2403
BstDSI	CCRYGG	2 cut(s)	1408, 1638
BstEII	GGTNACC	1 cut(s)	2089
BstENI	CCTNNNNNAGG	4 cut(s)	897, 936, 1438, 2084
BstF5I	GGATG	6 cut(s)	544, 1210, 1501, 1804, 1942, 2367
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	9 cut(s)	7, 9, 168, 196, 235, 237, 269, 284, 2367
BstMAI	GTCTC	3 cut(s)	249, 953, 1986
BstMCI	CGRYCG	2 cut(s)	390, 2505
BstNI	CCWGG	6 cut(s)	150, 484, 1251, 1680, 1749, 2484
BstNSI	RCATGY	3 cut(s)	1910, 2357, 2379
BstPI	GGTNACC	1 cut(s)	2089
BstSCI	CCNGG	7 cut(s)	148, 180, 482, 1249, 1678, 1747, 2482
BstSFI	CTRYAG	2 cut(s)	1365, 1455
BstV1I	GCAGC	5 cut(s)	832, 848, 943, 1072, 2374
BstV2I	GAAGAC	4 cut(s)	343, 503, 1876, 2340
BstX2I	RGATCY	2 cut(s)	1006, 2512
BstYI	RGATCY	2 cut(s)	1006, 2512
BsuRI	GGCC	5 cut(s)	368, 426, 482, 1361, 2076
BtgI	CCRYGG	2 cut(s)	1408, 1638
BtsCI	GGATG	6 cut(s)	544, 1210, 1501, 1804, 1942, 2367
BtsI	GCAGTG	2 cut(s)	553, 1058
BtsIMutI	CAGTG	6 cut(s)	553, 1058, 1747, 1943, 1991, 2545
CciI	TCATGA	2 cut(s)	1074, 1969
CfoI	GCGC	9 cut(s)	7, 9, 168, 196, 235, 237, 269, 284, 2367
Cfr10I	RCCGGY	4 cut(s)	199, 263, 422, 478
Cfr13I	GGNCC	3 cut(s)	1565, 2039, 2075
Cfr42I	CCGCGG	1 cut(s)	1641
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	5 cut(s)	190, 1030, 1337, 2387, 2560
CspCI	CAANNNNNGTGG	2 cut(s)	1234, 1269
CviQI	GTAC	5 cut(s)	190, 1030, 1337, 2387, 2560
DdeI	CTNAG	7 cut(s)	10, 1890, 1958, 1983, 2004, 2133, 2403
DinI	GGCGCC	1 cut(s)	268
DraIII	CACNNNGTG	2 cut(s)	803, 1742
DriI	GACNNNNNGTC	1 cut(s)	1978
EaeI	YGGCCR	3 cut(s)	424, 480, 1359
Eam1104I	CTCTTC	1 cut(s)	53
Eam1105I	GACNNNNNGTC	1 cut(s)	1978
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	4 cut(s)	86, 488, 895, 994
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	2 cut(s)	877, 1408
Eco24I	GRGCYC	3 cut(s)	231, 491, 2222
Eco32I	GATATC	3 cut(s)	686, 1710, 1954
Eco47I	GGWCC	2 cut(s)	1565, 2039
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	995
Eco72I	CACGTG	1 cut(s)	436
Eco88I	CYCGRG	1 cut(s)	1447
Eco91I	GGTNACC	1 cut(s)	2089
EcoICRI	GAGCTC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	4 cut(s)	897, 936, 1438, 2084
EcoO65I	GGTNACC	1 cut(s)	2089
EcoRI	GAATTC	2 cut(s)	209, 858
EcoRII	CCWGG	6 cut(s)	148, 482, 1249, 1678, 1747, 2482
EcoRV	GATATC	3 cut(s)	686, 1710, 1954
EcoT14I	CCWWGG	2 cut(s)	877, 1408
EcoT38I	GRGCYC	3 cut(s)	231, 491, 2222
EgeI	GGCGCC	1 cut(s)	268
EheI	GGCGCC	1 cut(s)	268
ErhI	CCWWGG	2 cut(s)	877, 1408
FalI	AAGNNNNNCTT	2 cut(s)	1824, 1856
FaqI	GGGAC	1 cut(s)	164
FauI	CCCGC	1 cut(s)	263
FauNDI	CATATG	1 cut(s)	1510
FbaI	TGATCA	2 cut(s)	1312, 2193
FblI	GTMKAC	2 cut(s)	1626, 1719
Fnu4HI	GCNGC	8 cut(s)	197, 420, 837, 846, 957, 1086, 1362, 2363
FokI	GGATG	6 cut(s)	551, 1217, 1508, 1791, 1949, 2354
FriOI	GRGCYC	3 cut(s)	231, 491, 2222
Fsp4HI	GCNGC	8 cut(s)	197, 420, 837, 846, 957, 1086, 1362, 2363
FspBI	CTAG	6 cut(s)	710, 801, 878, 1017, 1388, 1812
GlaI	GCGC	9 cut(s)	6, 8, 167, 195, 234, 236, 268, 283, 2366
GluI	GCNGC	8 cut(s)	197, 420, 837, 846, 957, 1086, 1362, 2363
GsaI	CCCAGC	2 cut(s)	448, 956
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	5 cut(s)	368, 426, 482, 1361, 2076
HapII	CCGG	7 cut(s)	182, 200, 264, 336, 423, 479, 1934
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	9 cut(s)	7, 9, 168, 196, 235, 237, 269, 284, 2367
Hin1I	GRCGYC	1 cut(s)	267
Hin6I	GCGC	9 cut(s)	5, 7, 166, 194, 233, 235, 267, 282, 2365
HinP1I	GCGC	9 cut(s)	5, 7, 166, 194, 233, 235, 267, 282, 2365
HindIII	AAGCTT	1 cut(s)	1838
HinfI	GANTC	6 cut(s)	308, 324, 348, 382, 1375, 2489
HpaII	CCGG	7 cut(s)	182, 200, 264, 336, 423, 479, 1934
HphI	GGTGA	8 cut(s)	43, 94, 163, 893, 953, 2083, 2246, 2255
Hpy166II	GTNNAC	6 cut(s)	806, 1403, 1627, 1720, 1943, 2246
Hpy188I	TCNGA	5 cut(s)	387, 690, 820, 2134, 2507
Hpy8I	GTNNAC	6 cut(s)	806, 1403, 1627, 1720, 1943, 2246
Hpy99I	CGWCG	2 cut(s)	305, 419
HpyCH4III	ACNGT	8 cut(s)	178, 554, 654, 697, 1336, 1742, 1947, 2540
HpyCH4IV	ACGT	3 cut(s)	435, 1321, 2295
HpyF3I	CTNAG	7 cut(s)	10, 1890, 1958, 1983, 2004, 2133, 2403
HpySE526I	ACGT	3 cut(s)	435, 1321, 2295
Hsp92I	GRCGYC	1 cut(s)	267
HspAI	GCGC	9 cut(s)	5, 7, 166, 194, 233, 235, 267, 282, 2365
KasI	GGCGCC	1 cut(s)	266
Kpn2I	TCCGGA	1 cut(s)	1933
KroI	GCCGGC	4 cut(s)	199, 263, 422, 478
KroNI	GCCGGC	4 cut(s)	201, 265, 424, 480
Ksp22I	TGATCA	2 cut(s)	1312, 2193
KspI	CCGCGG	1 cut(s)	1641
LguI	GCTCTTC	1 cut(s)	53
LmnI	GCTCC	8 cut(s)	19, 208, 257, 475, 486, 703, 908, 1240
Lsp1109I	GCAGC	5 cut(s)	832, 848, 943, 1072, 2374
LweI	GCATC	4 cut(s)	168, 1065, 1761, 2376
MaeI	CTAG	6 cut(s)	710, 801, 878, 1017, 1388, 1812
MaeII	ACGT	3 cut(s)	435, 1321, 2295
MaeIII	GTNAC	5 cut(s)	169, 548, 1876, 2089, 2136
MbiI	CCGCTC	1 cut(s)	252
MflI	RGATCY	2 cut(s)	1006, 2512
MhlI	GDGCHC	5 cut(s)	231, 435, 441, 491, 2222
Mly113I	GGCGCC	1 cut(s)	267
MlyI	GAGTC	3 cut(s)	357, 391, 1369
MmeI	TCCRAC	4 cut(s)	410, 1186, 1929, 2568
MreI	CGCCGGCG	1 cut(s)	263
MroI	TCCGGA	1 cut(s)	1933
MroNI	GCCGGC	4 cut(s)	199, 263, 422, 478
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	7 cut(s)	1140, 1467, 1691, 1698, 1797, 1860, 2429
MslI	CAYNNNNRTG	2 cut(s)	2271, 2397
MspA1I	CMGCKG	3 cut(s)	956, 1190, 1640
MspI	CCGG	7 cut(s)	182, 200, 264, 336, 423, 479, 1934
MspR9I	CCNGG	7 cut(s)	150, 182, 484, 1251, 1680, 1749, 2484
Mva1269I	GAATGC	2 cut(s)	779, 1769
MvaI	CCWGG	6 cut(s)	150, 484, 1251, 1680, 1749, 2484
NaeI	GCCGGC	4 cut(s)	201, 265, 424, 480
NarI	GGCGCC	1 cut(s)	267
NciI	CCSGG	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	1408
NdeI	CATATG	1 cut(s)	1510
NgoMIV	GCCGGC	4 cut(s)	199, 263, 422, 478
NlaIV	GGNNCC	7 cut(s)	204, 268, 477, 488, 904, 1654, 2077
NmeAIII	GCCGAG	2 cut(s)	420, 487
NmuCI	GTSAC	3 cut(s)	169, 548, 2089
NspI	RCATGY	3 cut(s)	1910, 2357, 2379
NspV	TTCGAA	1 cut(s)	1170
OliI	CACNNNNGTG	1 cut(s)	2271
PaeI	GCATGC	1 cut(s)	1910
PagI	TCATGA	2 cut(s)	1074, 1969
PauI	GCGCGC	2 cut(s)	5, 233
PciSI	GCTCTTC	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PctI	GAATGC	2 cut(s)	779, 1769
PdiI	GCCGGC	4 cut(s)	201, 265, 424, 480
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	3 cut(s)	308, 324, 2489
PflFI	GACNNNGTC	1 cut(s)	2339
PflMI	CCANNNNNTGG	1 cut(s)	784
PkrI	GCNGC	8 cut(s)	198, 421, 838, 847, 958, 1087, 1363, 2364
Ple19I	CGATCG	1 cut(s)	2505
PleI	GAGTC	3 cut(s)	356, 390, 1369
PluTI	GGCGCC	1 cut(s)	270
PmaCI	CACGTG	1 cut(s)	436
PmlI	CACGTG	1 cut(s)	436
PpsI	GAGTC	3 cut(s)	356, 390, 1369
Ppu21I	YACGTR	1 cut(s)	436
PshBI	ATTAAT	1 cut(s)	1467
PsiI	TTATAA	2 cut(s)	1001, 1821
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	6 cut(s)	148, 482, 1249, 1678, 1747, 2482
PspCI	CACGTG	1 cut(s)	436
PspEI	GGTNACC	1 cut(s)	2089
PspFI	CCCAGC	2 cut(s)	444, 952
PspGI	CCWGG	6 cut(s)	148, 482, 1249, 1678, 1747, 2482
PspN4I	GGNNCC	7 cut(s)	204, 268, 477, 488, 904, 1654, 2077
PspPI	GGNCC	3 cut(s)	1565, 2039, 2075
PsrI	GAACNNNNNNTAC	2 cut(s)	2238, 2270
PsuI	RGATCY	2 cut(s)	1006, 2512
PsyI	GACNNNGTC	1 cut(s)	2339
PteI	GCGCGC	2 cut(s)	5, 233
PvuI	CGATCG	1 cut(s)	2505
PvuII	CAGCTG	2 cut(s)	956, 1190
RsaI	GTAC	5 cut(s)	191, 1031, 1338, 2388, 2561
RsaNI	GTAC	5 cut(s)	190, 1030, 1337, 2387, 2560
RseI	CAYNNNNRTG	2 cut(s)	2271, 2397
SacI	GAGCTC	1 cut(s)	231
SacII	CCGCGG	1 cut(s)	1641
SapI	GCTCTTC	1 cut(s)	53
SaqAI	TTAA	7 cut(s)	1140, 1467, 1691, 1698, 1797, 1860, 2429
SatI	GCNGC	8 cut(s)	197, 420, 837, 846, 957, 1086, 1362, 2363
Sau96I	GGNCC	3 cut(s)	1565, 2039, 2075
SchI	GAGTC	3 cut(s)	357, 391, 1369
ScrFI	CCNGG	7 cut(s)	150, 182, 484, 1251, 1680, 1749, 2484
SduI	GDGCHC	5 cut(s)	231, 435, 441, 491, 2222
SfaNI	GCATC	4 cut(s)	168, 1065, 1761, 2376
SfcI	CTRYAG	2 cut(s)	1365, 1455
SfoI	GGCGCC	1 cut(s)	268
Sfr303I	CCGCGG	1 cut(s)	1641
SfuI	TTCGAA	1 cut(s)	1170
SgrAI	CRCCGGYG	1 cut(s)	263
SgrBI	CCGCGG	1 cut(s)	1641
SinI	GGWCC	2 cut(s)	1565, 2039
SmiMI	CAYNNNNRTG	2 cut(s)	2271, 2397
SmlI	CTYRAG	3 cut(s)	239, 840, 2221
SmoI	CTYRAG	3 cut(s)	239, 840, 2221
SphI	GCATGC	1 cut(s)	1910
SspDI	GGCGCC	1 cut(s)	266
SspI	AATATT	2 cut(s)	1780, 2581
SspMI	CTAG	6 cut(s)	710, 801, 878, 1017, 1388, 1812
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	7 cut(s)	148, 180, 482, 1249, 1678, 1747, 2482
StyI	CCWWGG	2 cut(s)	877, 1408
TaaI	ACNGT	8 cut(s)	178, 554, 654, 697, 1336, 1742, 1947, 2540
TaiI	ACGT	3 cut(s)	438, 1324, 2298
TaqI	TCGA	6 cut(s)	213, 219, 300, 719, 1150, 1170
TaqII	GACCGA	1 cut(s)	404
TatI	WGTACW	2 cut(s)	1029, 2386
TauI	GCSGC	3 cut(s)	199, 422, 1364
TfiI	GAWTC	3 cut(s)	308, 324, 2489
Tru1I	TTAA	7 cut(s)	1140, 1467, 1691, 1698, 1797, 1860, 2429
Tru9I	TTAA	7 cut(s)	1140, 1467, 1691, 1698, 1797, 1860, 2429
TscAI	CASTG	6 cut(s)	553, 1058, 1747, 1950, 1991, 2545
TseFI	GTSAC	3 cut(s)	169, 548, 2089
TseI	GCWGC	5 cut(s)	836, 845, 956, 1085, 2362
Tsp45I	GTSAC	3 cut(s)	169, 548, 2089
TspDTI	ATGAA	4 cut(s)	615, 782, 1116, 2486
TspGWI	ACGGA	2 cut(s)	318, 957
TspRI	CASTG	6 cut(s)	553, 1058, 1747, 1950, 1991, 2545
Tth111I	GACNNNGTC	1 cut(s)	2339
Van91I	CCANNNNNTGG	1 cut(s)	784
VpaK11BI	GGWCC	2 cut(s)	1565, 2039
VspI	ATTAAT	1 cut(s)	1467
XagI	CCTNNNNNAGG	4 cut(s)	897, 936, 1438, 2084
XapI	RAATTY	8 cut(s)	209, 634, 789, 858, 885, 1547, 2032, 2326
XbaI	TCTAGA	1 cut(s)	1811
XceI	RCATGY	3 cut(s)	1910, 2357, 2379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1934
XmaJI	CCTAGG	1 cut(s)	877
XmiI	GTMKAC	2 cut(s)	1626, 1719
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	6 cut(s)	710, 801, 878, 1017, 1388, 1812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.