Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012654

Physical Location & Seq

Genomic Coordinates Forward (+)

60583789 .. 60584794

Gene Structure 1006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAGATATTTCACATTATCCTCCTCTTCGGCTCACCTTGTTCTTCTTCTACAGTTCTACTTGAGTTTTTCAACCATGGACGTCATTTCCCGGCAGCACCCGCAGTCGACTCTGAACCCGAACGCTCCGATGTTCGTTCCGTCGGCTTATCGGACGGTGGAGGACTTCTCCGCCGAGTGGTGGGCCCTGGTTCAGTCCTCCCCTTGGTTCCGCGACTACTGGCTCCAGGAGAACTTCCAGGATCCCCAGAATGACCCCTTCTTTTCCGATATTCCCGACGACTCCGACTACATCGACGACCTCTTCGACGAGGAACACTACCCCACCGCCACCAACAACAACGCACAACCGGAGGTGGTGGAGGAGGAAGAAGAGGAGGAGAAAGACTATCACAAGGAGCTGGTTTCGTTGGGACTGTTGAAGTGGCCGAAGGGTCGAGCTGTGGCGAAGGCGCCGAGGTTTATAGAGAAAGCTCCGAAGATTGTGAATGTCAAAGTGAGTCCCAGGGCGATTCAGCAGCCGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

175

Amino Acids

20.43

Weight (kDa)

4.67

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25400 FvH4_7g25400 FvH4_7g25400
malus_domestica	MD01G1160300.v1.1 MD07G1228500.v1.1
prunus_persica	Prupe.2G258200_v2.0.a1 Prupe.2G258200_v2.0.a1
pyrus_communis	pycom07g20690
rosa_chinensis	RchiOBHm_Chr1g0371351
rosa_laevigata	RLG00000026969
rosa_multiflora	Rmu_sc0000809.1_g000037
rosa_roxburghii	Rroxscaffold_4G00285770
rosa_rugosa	Rorug01G0363300 Rorug01G0363300 Rorug01G0363300
rosa_samantha	Rh1AG373300 Rh1BG336800 Rh1CG350100
rosa_wichuraiana	Rw1G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	451
AccI	GTMKAC	1 cut(s)	107
AccII	CGCG	1 cut(s)	213
AciI	CCGC	4 cut(s)	101, 171, 211, 327
AclWI	GGATC	2 cut(s)	236, 249
AcoI	YGGCCR	1 cut(s)	425
AcyI	GRCGYC	2 cut(s)	81, 452
AfiI	CCNNNNNNNGG	3 cut(s)	177, 180, 204
AgsI	TTSAA	2 cut(s)	72, 421
AjnI	CCWGG	4 cut(s)	186, 225, 237, 503
AluBI	AGCT	3 cut(s)	400, 440, 473
AluI	AGCT	3 cut(s)	400, 440, 473
AlwI	GGATC	2 cut(s)	236, 249
AoxI	GGCC	2 cut(s)	183, 425
ApaI	GGGCCC	1 cut(s)	187
ApeKI	GCWGC	2 cut(s)	94, 517
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	2 cut(s)	183, 184
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	187
BamHI	GGATCC	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	106
BciT130I	CCWGG	4 cut(s)	188, 227, 239, 505
BcnI	CCSGG	1 cut(s)	91
BfmI	CTRYAG	1 cut(s)	50
BfoI	RGCGCY	1 cut(s)	455
BisI	GCNGC	2 cut(s)	95, 518
BlsI	GCNGC	2 cut(s)	96, 519
Bme1390I	CCNGG	5 cut(s)	91, 188, 227, 239, 505
BmgT120I	GGNCC	2 cut(s)	183, 184
BmiI	GGNNCC	5 cut(s)	185, 209, 224, 243, 453
BmrFI	CCNGG	5 cut(s)	91, 188, 227, 239, 505
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpmI	CTGGAG	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	91
BsaHI	GRCGYC	2 cut(s)	81, 452
BsaJI	CCNNGG	7 cut(s)	75, 186, 203, 455, 503, 504, 521
BsaWI	WCCGGW	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 180, 204
Bse1I	ACTGG	1 cut(s)	224
BseBI	CCWGG	4 cut(s)	188, 227, 239, 505
BseDI	CCNNGG	7 cut(s)	75, 186, 203, 455, 503, 504, 521
BseLI	CCNNNNNNNGG	3 cut(s)	177, 180, 204
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	4 cut(s)	13, 377, 389, 392
BseSI	GKGCMC	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	2 cut(s)	185, 427
BshNI	GGYRCC	1 cut(s)	451
BsiSI	CCGG	2 cut(s)	91, 350
BslFI	GGGAC	2 cut(s)	426, 486
BslI	CCNNNNNNNGG	3 cut(s)	177, 180, 204
BsmFI	GGGAC	2 cut(s)	426, 486
BsnI	GGCC	2 cut(s)	185, 427
Bsp120I	GGGCCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	1 cut(s)	241
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	4 cut(s)	101, 171, 211, 327
BspANI	GGCC	2 cut(s)	185, 427
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	5 cut(s)	185, 209, 224, 243, 453
BspPI	GGATC	2 cut(s)	236, 249
BspT107I	GGYRCC	1 cut(s)	451
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	7 cut(s)	75, 186, 203, 455, 503, 504, 521
BssMI	GATC	1 cut(s)	241
BssNI	GRCGYC	2 cut(s)	81, 452
BssT1I	CCWWGG	2 cut(s)	75, 203
Bst2UI	CCWGG	4 cut(s)	188, 227, 239, 505
Bst4CI	ACNGT	3 cut(s)	54, 157, 417
Bst6I	CTCTTC	3 cut(s)	31, 308, 366
BstACI	GRCGYC	2 cut(s)	81, 452
BstDSI	CCRYGG	1 cut(s)	75
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	4 cut(s)	188, 227, 239, 505
BstSCI	CCNGG	5 cut(s)	89, 186, 225, 237, 503
BstSFI	CTRYAG	1 cut(s)	50
BstSLI	GKGCMC	1 cut(s)	187
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	185, 427
BtgI	CCRYGG	1 cut(s)	75
CfoI	GCGC	1 cut(s)	454
Cfr13I	GGNCC	2 cut(s)	183, 184
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	9 cut(s)	32, 146, 185, 223, 400, 427, 440, 473, 520
CviKI_1	RGCY	9 cut(s)	32, 146, 185, 223, 400, 427, 440, 473, 520
DinI	GGCGCC	1 cut(s)	453
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	425
Eam1104I	CTCTTC	3 cut(s)	31, 308, 366
EarI	CTCTTC	3 cut(s)	31, 308, 366
EciI	GGCGGA	1 cut(s)	160
Eco130I	CCWWGG	2 cut(s)	75, 203
Eco24I	GRGCYC	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRII	CCWGG	4 cut(s)	186, 225, 237, 503
EcoT14I	CCWWGG	2 cut(s)	75, 203
EcoT38I	GRGCYC	1 cut(s)	187
EgeI	GGCGCC	1 cut(s)	453
EheI	GGCGCC	1 cut(s)	453
ErhI	CCWWGG	2 cut(s)	75, 203
FaeI	CATG	1 cut(s)	79
FaiI	YATR	2 cut(s)	77, 464
FaqI	GGGAC	2 cut(s)	426, 486
FatI	CATG	1 cut(s)	75
FauI	CCCGC	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	95, 518
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	2 cut(s)	95, 518
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	2 cut(s)	95, 518
GsuI	CTGGAG	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	2 cut(s)	185, 427
HapII	CCGG	2 cut(s)	91, 350
HhaI	GCGC	1 cut(s)	454
Hin1I	GRCGYC	2 cut(s)	81, 452
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	4 cut(s)	109, 281, 499, 511
HpaII	CCGG	2 cut(s)	91, 350
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	6 cut(s)	114, 129, 153, 268, 286, 477
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	108
Hpy99I	CGWCG	4 cut(s)	145, 281, 299, 311
HpyAV	CCTTC	3 cut(s)	268, 424, 442
HpyCH4III	ACNGT	3 cut(s)	54, 157, 417
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	2 cut(s)	81, 452
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	1 cut(s)	452
KasI	GGCGCC	1 cut(s)	451
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	4 cut(s)	130, 228, 397, 478
Lsp1109I	GCAGC	1 cut(s)	106
MaeII	ACGT	1 cut(s)	81
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	7 cut(s)	18, 35, 38, 295, 380, 383, 490
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	187
Mly113I	GGCGCC	1 cut(s)	452
MlyI	GAGTC	3 cut(s)	103, 275, 508
MmeI	TCCRAC	1 cut(s)	309
MspI	CCGG	2 cut(s)	91, 350
MspR9I	CCNGG	5 cut(s)	91, 188, 227, 239, 505
MvaI	CCWGG	4 cut(s)	188, 227, 239, 505
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	100
NarI	GGCGCC	1 cut(s)	452
NciI	CCSGG	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	5 cut(s)	185, 209, 224, 243, 453
NmeAIII	GCCGAG	2 cut(s)	199, 480
PasI	CCCWGGG	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	511
PfoI	TCCNGGA	2 cut(s)	225, 237
PkrI	GCNGC	2 cut(s)	96, 519
PleI	GAGTC	3 cut(s)	103, 275, 507
PluTI	GGCGCC	1 cut(s)	455
PpsI	GAGTC	3 cut(s)	103, 275, 507
Psp6I	CCWGG	4 cut(s)	186, 225, 237, 503
PspGI	CCWGG	4 cut(s)	186, 225, 237, 503
PspN4I	GGNNCC	5 cut(s)	185, 209, 224, 243, 453
PspOMI	GGGCCC	1 cut(s)	183
PspPI	GGNCC	2 cut(s)	183, 184
PsuI	RGATCY	1 cut(s)	241
SalI	GTCGAC	1 cut(s)	106
SatI	GCNGC	2 cut(s)	95, 518
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	2 cut(s)	183, 184
SchI	GAGTC	3 cut(s)	103, 275, 508
ScrFI	CCNGG	5 cut(s)	91, 188, 227, 239, 505
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	9 cut(s)	39, 84, 303, 357, 402, 442, 461, 475, 527
SfcI	CTRYAG	1 cut(s)	50
SfoI	GGCGCC	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
SsiI	CCGC	4 cut(s)	101, 171, 211, 327
SspDI	GGCGCC	1 cut(s)	451
StyD4I	CCNGG	5 cut(s)	89, 186, 225, 237, 503
StyI	CCWWGG	2 cut(s)	75, 203
TaaI	ACNGT	3 cut(s)	54, 157, 417
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	4 cut(s)	107, 294, 306, 436
TfiI	GAWTC	1 cut(s)	511
TseI	GCWGC	2 cut(s)	94, 517
TspGWI	ACGGA	1 cut(s)	129
XmiI	GTMKAC	1 cut(s)	107
ZraI	GACGTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.