RchiOBHm_Chr1g0372341

Putative tRNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012158
Physical Location & Seq
Forward (+)
61087912 .. 61093038
5127 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1029 bp
ATGATGAGTAACTTTTATGTGCTTAAGTGGATAAAATATGCACAGGGGTTTCCTAGTGATCCCCAGGCATGCGTTGGAGCTCTGAAAGAGTTGAATGAAACCTTGGTTGACAGGACTGTGCTTTTGGGCAATGGGTTCACACCTTCTGAAGCCGATGTTAGTGTGTTTGCTGCTGTGCATTCATCTGTGATTGGTCTTTCGAATTCAGATAGGAAAAAGTTTCAGCATGTATTGAGATGGGCGACACACATCCAGCACAACGTGGATTTTGGAAATTTACTCGAGAAGATAGTGGTAGAGGAAGTTGAATTTGATTTCCATAAGTTAGACATTTGGCTGAAACCAAAAAGTGCAGCTAAGGAGGAAGTAGATTCAAATGCAAGGATGACTGTTCAAAGCACAAAAAGTGCTGACAAGCCGGAAGCAGGCCCGAGCACAAAGAAAAGTGATTCAGGAACAAAGACTACAGGAGATAAGAAAGCTACTCAAGAGAATAAAAAATCAGCAGAGGTAGAGGCAGTTGAAAAAGATAAAGAAGTTAGTGTCAGTTTGTTGAATATACAGGTTGGCCTCATTCGAAAAGCTTGGAAGCATCCATCTGCTGACAGTTTACTGGTTGAGGAGATAGATGTGGGAGATGCTAAATTGAGGCAAGTGGTAAGCGGCCTGGCAAAGTTTTGCAGTCCAGAAGAATTGACGAACCGTCGTGTTGTGCTGATTACAAACGTGAAACCTGGGAAATTACGTGACGTAATGTCAGAAGGACTGGTGCTGTGTGCTTCTAGTGAAGATCACACCCTTGTAGAGCCTTTGCTCCCCCCAGAAGGTGCCAAAATCGGGGAACGTGTCATATTTTCTGGGATTGATGGAAAGCCAGAAGATGTCCTCAACCCAAAAAAGAAGCAGTTGGATAAGATTACACCGCATCTCTTCACTGATGACAAGGGTGTTGCTACATTCAAGGGTATTCCTTTCATGACATCTGCAGGGCCTTGCACATCGTCCATTTCCAAGGGAACTGTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GST_C tRNA_bind

Protein Analysis

342

Amino Acids

37.39

Weight (kDa)

7.09

Isoelectric Point (pI)

32.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arc1p_N_like PF21972 27 - 87 8.7e-12 Nuclear-export cofactor Arc1p
tRNA_bind PF01588 187 - 282 2.2e-26 Putative tRNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40660
fragaria_vesca FvH4_7g25960
malus_domestica MD01G1168000.v1.1 MD07G1234000.v1.1
prunus_persica Prupe.2G264400_v2.0.a1
pyrus_communis pycom01g18100 pycom07g21180
rosa_chinensis RchiOBHm_Chr1g0372341
rosa_laevigata RLG00000026906
rosa_multiflora Rmu_sc0001755.1_g000007
rosa_roxburghii Rroxscaffold_4G00285030
rosa_rugosa Rorug01G0371300 Rorug01G0371300 Rorug01G0371300
rosa_samantha Rh1AG379700 Rh1BG343200 Rh1CG356700 Rh1DG374400
rosa_wichuraiana Rw1G033380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 827
AciI CCGC 2 cut(s) 663, 923
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 3 cut(s) 202, 274, 308
AcuI CTGAAG 1 cut(s) 168
AdeI CACNNNGTG 1 cut(s) 262
AfiI CCNNNNNNNGG 3 cut(s) 425, 824, 837
AflII CTTAAG 1 cut(s) 23
AflIII ACRYGT 1 cut(s) 844
AgsI TTSAA 7 cut(s) 94, 308, 375, 395, 524, 556, 961
AhdI GACNNNNNGTC 2 cut(s) 702, 754
AjnI CCWGG 3 cut(s) 63, 666, 733
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 4 cut(s) 80, 356, 482, 584
AluI AGCT 4 cut(s) 80, 356, 482, 584
Alw21I GWGCWC 2 cut(s) 82, 437
AlwI GGATC 1 cut(s) 53
Ama87I CYCGRG 2 cut(s) 281, 430
AoxI GGCC 4 cut(s) 427, 568, 664, 989
ApeKI GCWGC 2 cut(s) 170, 353
ApoI RAATTY 3 cut(s) 202, 274, 308
ArsI GACNNNNNNTTYG 2 cut(s) 106, 138
AspS9I GGNCC 2 cut(s) 428, 989
AsuII TTCGAA 2 cut(s) 200, 577
AvaI CYCGRG 2 cut(s) 281, 430
BanI GGYRCC 1 cut(s) 827
BanII GRGCYC 1 cut(s) 82
Bbv12I GWGCWC 2 cut(s) 82, 437
BbvI GCAGC 2 cut(s) 157, 365
BccI CCATC 3 cut(s) 231, 604, 860
BciT130I CCWGG 3 cut(s) 65, 668, 735
BfaI CTAG 2 cut(s) 54, 783
BfmI CTRYAG 2 cut(s) 465, 984
BfrI CTTAAG 1 cut(s) 23
BisI GCNGC 3 cut(s) 171, 354, 664
BlsI GCNGC 3 cut(s) 172, 355, 665
Bme1390I CCNGG 3 cut(s) 65, 668, 735
BmeRI GACNNNNNGTC 2 cut(s) 702, 754
BmeT110I CYCGRG 2 cut(s) 281, 430
BmgT120I GGNCC 2 cut(s) 428, 989
BmiI GGNNCC 1 cut(s) 829
BmrFI CCNGG 3 cut(s) 65, 668, 735
BmsI GCATC 3 cut(s) 601, 628, 934
Bpu10I CCTNAGC 1 cut(s) 357
Bpu14I TTCGAA 2 cut(s) 200, 577
BpuEI CTTGAG 1 cut(s) 471
BsaAI YACGTR 1 cut(s) 746
BsaJI CCNNGG 4 cut(s) 63, 102, 734, 1011
Bsc4I CCNNNNNNNGG 3 cut(s) 425, 824, 837
Bse1I ACTGG 2 cut(s) 618, 771
Bse3DI GCAATG 1 cut(s) 136
BseBI CCWGG 3 cut(s) 65, 668, 735
BseDI CCNNGG 4 cut(s) 63, 102, 734, 1011
BseGI GGATG 3 cut(s) 249, 390, 592
BseLI CCNNNNNNNGG 3 cut(s) 425, 824, 837
BseMI GCAATG 1 cut(s) 136
BseNI ACTGG 2 cut(s) 618, 771
BseRI GAGGAG 1 cut(s) 635
BseXI GCAGC 2 cut(s) 157, 365
BsgI GTGCAG 1 cut(s) 372
BshFI GGCC 4 cut(s) 429, 570, 666, 991
BshNI GGYRCC 1 cut(s) 827
BsiHKAI GWGCWC 2 cut(s) 82, 437
BsiHKCI CYCGRG 2 cut(s) 281, 430
BsiSI CCGG 1 cut(s) 419
BslI CCNNNNNNNGG 3 cut(s) 425, 824, 837
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 4 cut(s) 429, 570, 666, 991
BsoBI CYCGRG 2 cut(s) 281, 430
Bsp119I TTCGAA 2 cut(s) 200, 577
Bsp1286I GDGCHC 2 cut(s) 82, 437
Bsp143I GATC 2 cut(s) 58, 790
BspACI CCGC 2 cut(s) 663, 923
BspANI GGCC 4 cut(s) 429, 570, 666, 991
BspHI TCATGA 1 cut(s) 975
BspLI GGNNCC 1 cut(s) 829
BspMAI CTGCAG 1 cut(s) 988
BspPI GGATC 1 cut(s) 53
BspT104I TTCGAA 2 cut(s) 200, 577
BspT107I GGYRCC 1 cut(s) 827
BspTI CTTAAG 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 136
BsrI ACTGG 2 cut(s) 618, 771
BssECI CCNNGG 4 cut(s) 63, 102, 734, 1011
BssMI GATC 2 cut(s) 58, 790
BssT1I CCWWGG 2 cut(s) 102, 1011
Bst2UI CCWGG 3 cut(s) 65, 668, 735
Bst4CI ACNGT 5 cut(s) 118, 391, 608, 704, 1021
Bst6I CTCTTC 1 cut(s) 935
BstAFI CTTAAG 1 cut(s) 23
BstBAI YACGTR 1 cut(s) 746
BstBI TTCGAA 2 cut(s) 200, 577
BstC8I GCNNGC 2 cut(s) 70, 427
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 3 cut(s) 249, 390, 592
BstKTI GATC 2 cut(s) 61, 793
BstMBI GATC 2 cut(s) 58, 790
BstNI CCWGG 3 cut(s) 65, 668, 735
BstNSI RCATGY 2 cut(s) 72, 230
BstSCI CCNGG 3 cut(s) 63, 666, 733
BstSFI CTRYAG 2 cut(s) 465, 984
BstV1I GCAGC 2 cut(s) 157, 365
BsuRI GGCC 4 cut(s) 429, 570, 666, 991
BtsCI GGATG 3 cut(s) 249, 390, 592
BtsIMutI CAGTG 1 cut(s) 933
Cac8I GCNNGC 2 cut(s) 70, 427
CciI TCATGA 1 cut(s) 975
Cfr13I GGNCC 2 cut(s) 428, 989
CviAII CATG 3 cut(s) 69, 227, 976
DdeI CTNAG 1 cut(s) 357
DpnI GATC 2 cut(s) 60, 792
DpnII GATC 2 cut(s) 58, 790
DraIII CACNNNGTG 1 cut(s) 262
DriI GACNNNNNGTC 2 cut(s) 702, 754
Eam1104I CTCTTC 1 cut(s) 935
Eam1105I GACNNNNNGTC 2 cut(s) 702, 754
EarI CTCTTC 1 cut(s) 935
Ecl136II GAGCTC 1 cut(s) 80
Eco130I CCWWGG 2 cut(s) 102, 1011
Eco24I GRGCYC 1 cut(s) 82
Eco53kI GAGCTC 1 cut(s) 80
Eco57I CTGAAG 1 cut(s) 168
Eco88I CYCGRG 2 cut(s) 281, 430
EcoICRI GAGCTC 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 989
EcoRI GAATTC 1 cut(s) 202
EcoRII CCWGG 3 cut(s) 63, 666, 733
EcoT14I CCWWGG 2 cut(s) 102, 1011
EcoT38I GRGCYC 1 cut(s) 82
ErhI CCWWGG 2 cut(s) 102, 1011
FaeI CATG 3 cut(s) 72, 230, 979
FaiI YATR 8 cut(s) 18, 39, 70, 228, 321, 560, 851, 977
FatI CATG 3 cut(s) 68, 226, 975
Fnu4HI GCNGC 3 cut(s) 171, 354, 664
FokI GGATG 3 cut(s) 236, 397, 579
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 3 cut(s) 171, 354, 664
FspBI CTAG 2 cut(s) 54, 783
GluI GCNGC 3 cut(s) 171, 354, 664
HaeIII GGCC 4 cut(s) 429, 570, 666, 991
HapII CCGG 1 cut(s) 419
Hin1II CATG 3 cut(s) 72, 230, 979
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 582
HinfI GANTC 2 cut(s) 371, 449
HpaII CCGG 1 cut(s) 419
Hpy166II GTNNAC 3 cut(s) 109, 138, 611
Hpy188I TCNGA 4 cut(s) 84, 148, 208, 760
Hpy188III TCNNGA 5 cut(s) 283, 453, 488, 686, 976
Hpy8I GTNNAC 3 cut(s) 109, 138, 611
Hpy99I CGWCG 1 cut(s) 708
HpyAV CCTTC 3 cut(s) 153, 755, 818
HpyCH4III ACNGT 5 cut(s) 118, 391, 608, 704, 1021
HpyCH4IV ACGT 5 cut(s) 261, 726, 745, 750, 844
HpyCH4V TGCA 7 cut(s) 41, 178, 353, 380, 681, 986, 996
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 5 cut(s) 261, 726, 745, 750, 844
Hsp92II CATG 3 cut(s) 72, 230, 979
Kzo9I GATC 2 cut(s) 58, 790
LmnI GCTCC 2 cut(s) 77, 819
Lsp1109I GCAGC 2 cut(s) 157, 365
LweI GCATC 3 cut(s) 601, 628, 934
MaeI CTAG 2 cut(s) 54, 783
MaeII ACGT 5 cut(s) 261, 726, 745, 750, 844
MaeIII GTNAC 2 cut(s) 8, 746
MalI GATC 2 cut(s) 60, 792
MboI GATC 2 cut(s) 58, 790
MboII GAAGA 5 cut(s) 298, 701, 800, 890, 922
MhlI GDGCHC 2 cut(s) 82, 437
MluCI AATT 6 cut(s) 202, 274, 308, 644, 692, 740
MmeI TCCRAC 2 cut(s) 55, 888
MnlI CCTC 8 cut(s) 292, 355, 502, 508, 581, 613, 642, 896
MseI TTAA 1 cut(s) 24
MspCI CTTAAG 1 cut(s) 23
MspI CCGG 1 cut(s) 419
MspR9I CCNGG 3 cut(s) 65, 668, 735
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 3 cut(s) 65, 668, 735
NdeII GATC 2 cut(s) 58, 790
NlaIII CATG 3 cut(s) 72, 230, 979
NlaIV GGNNCC 1 cut(s) 829
NmuCI GTSAC 1 cut(s) 746
NspI RCATGY 2 cut(s) 72, 230
NspV TTCGAA 2 cut(s) 200, 577
PaeI GCATGC 1 cut(s) 72
PaeR7I CTCGAG 1 cut(s) 281
PagI TCATGA 1 cut(s) 975
PctI GAATGC 1 cut(s) 178
PfeI GAWTC 2 cut(s) 371, 449
PkrI GCNGC 3 cut(s) 172, 355, 665
Ppu21I YACGTR 1 cut(s) 746
Psp124BI GAGCTC 1 cut(s) 82
Psp6I CCWGG 3 cut(s) 63, 666, 733
PspGI CCWGG 3 cut(s) 63, 666, 733
PspN4I GGNNCC 1 cut(s) 829
PspPI GGNCC 2 cut(s) 428, 989
PsrI GAACNNNNNNTAC 2 cut(s) 448, 480
PstI CTGCAG 1 cut(s) 988
SacI GAGCTC 1 cut(s) 82
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 3 cut(s) 171, 354, 664
Sau3AI GATC 2 cut(s) 58, 790
Sau96I GGNCC 2 cut(s) 428, 989
ScrFI CCNGG 3 cut(s) 65, 668, 735
SduI GDGCHC 2 cut(s) 82, 437
SfaNI GCATC 3 cut(s) 601, 628, 934
SfcI CTRYAG 2 cut(s) 465, 984
Sfr274I CTCGAG 1 cut(s) 281
SfuI TTCGAA 2 cut(s) 200, 577
SlaI CTCGAG 1 cut(s) 281
SmlI CTYRAG 3 cut(s) 23, 281, 486
SmoI CTYRAG 3 cut(s) 23, 281, 486
SphI GCATGC 1 cut(s) 72
Sse9I AATT 6 cut(s) 202, 274, 308, 644, 692, 740
SsiI CCGC 2 cut(s) 663, 923
SspMI CTAG 2 cut(s) 54, 783
SstI GAGCTC 1 cut(s) 82
StyD4I CCNGG 3 cut(s) 63, 666, 733
StyI CCWWGG 2 cut(s) 102, 1011
TaaI ACNGT 5 cut(s) 118, 391, 608, 704, 1021
TaiI ACGT 5 cut(s) 264, 729, 748, 753, 847
TaqI TCGA 3 cut(s) 200, 282, 577
TasI AATT 6 cut(s) 202, 274, 308, 644, 692, 740
TauI GCSGC 1 cut(s) 666
TfiI GAWTC 2 cut(s) 371, 449
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 1 cut(s) 940
TseFI GTSAC 1 cut(s) 746
TseI GCWGC 2 cut(s) 170, 353
Tsp45I GTSAC 1 cut(s) 746
TspDTI ATGAA 3 cut(s) 111, 171, 964
TspRI CASTG 1 cut(s) 940
Vha464I CTTAAG 1 cut(s) 23
XapI RAATTY 3 cut(s) 202, 274, 308
XceI RCATGY 2 cut(s) 72, 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 281
XspI CTAG 2 cut(s) 54, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.