RLG00000026906

Putative tRNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0012158
Physical Location & Seq
Reverse (-)
6894982 .. 6899248
4267 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026906

Sequence Viewer

Length: 1194 bp
ATGGCAGCTAATGGAAGCGTGGGCCTGAGCAGAAAGCAATTGATAGCTTCAGCTCTATGCAAATACTTTTCCATCAATCCTAAAACATTCCCAGAAAGCATTGCGGAAGATGAAATTGCAAGCCCCTACAAAACCATCTTGAAGACCGCCAAAAAGGAAGCCCCTGAGAAAGTGAATGATGAGGTGCTTCAGTGGATAAAATATGCAGAGGGGTTTCCTAGTGATCCCCAGGCATGCGTTGGAGCTCTGAAAGAGTTGAATGAAACCTTGGCTGACAGGACTGTGCTTTTGGGCAATGGGTTCACACCCTCTGAAGCCGATGTTAGTGTGTTTGCTGCTGTGCATTCATCTGTGATTGGTCTTTCGAATTCAGATAGGAAAAAGTTTCAGCATGTATTGAGATGGGTGACACACATCCAGCACAACGTGGAATTTGGAAACTTACTCGAGAAGATAGTGGTAGAGGAAGTTGAATTTGATTTCCATAAGTTAGACGTTTTGCTGAAACCAAAAAGTGCAGCTAAGAAGGAAGTAGATTCAAATGCAAAGAAGACTGTTCAAAGCACAAAAAGTGCTGACAAGCCGGAAGCAGGCCCGAGCACAAAGAAAAGTGATGCAGGAACAAAGACTACAGGAGATACGAAAGCTACTCAAGAGAAGAAAAAATCAGCAGAGGTAGAGGCAGTTGAAAAAGATAAAGAAGTAAGTGTCAGTTTGTTGAATATACAGGTTGGCCTCATTCGAAAAGCTTGGAAGCATCCATCTGCTGACAGTTTACTGGTTGAGGAGATAGATGTGGGAGATGCTAAATTGAGGCAAGTGGTAAGCGGCCTGGCAAAGTTTTGCAGTCCAGAAGAATTGACGAACCGTCGTGTTGTGCTGATTACAAATGTGAAACCTGGGAAATTACGTGACGTAATGTCAGAAGGACTGGTGCTGTGTGCTTCTAGTGAAGATCACACCCTTGTAGAGCCTTTGCTCCCCCCAGATGGCGCCAAAATCGGGGAACGTGTCGTATTTTCTGGGATTGATGGAAAGCCAGAAGATGTCCTCAACCCAAAAAAGAAGCAGTTGGATAAGATTACACCGCATCTCTTCACTGATGACAAGGGTGTTGCTACATTCAAGGGTATTCCTTTCATGACATCTGCAGGGCCTTGCACATCATCCATTTCCAAGGGAACTGTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GST_C tRNA_bind

Protein Analysis

398

Amino Acids

43.08

Weight (kDa)

8.09

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arc1p_N_like PF21972 80 - 142 1.4e-12 Nuclear-export cofactor Arc1p
tRNA_bind PF01588 242 - 336 3.8e-26 Putative tRNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012158)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40660
fragaria_vesca FvH4_7g25960
malus_domestica MD01G1168000.v1.1 MD07G1234000.v1.1
prunus_persica Prupe.2G264400_v2.0.a1
pyrus_communis pycom01g18100 pycom07g21180
rosa_chinensis RchiOBHm_Chr1g0372341
rosa_laevigata RLG00000026906
rosa_multiflora Rmu_sc0001755.1_g000007
rosa_roxburghii Rroxscaffold_4G00285030
rosa_rugosa Rorug01G0371300 Rorug01G0371300 Rorug01G0371300
rosa_samantha Rh1AG379700 Rh1BG343200 Rh1CG356700 Rh1DG374400
rosa_wichuraiana Rw1G033380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 992
AciI CCGC 4 cut(s) 104, 147, 828, 1088
AclWI GGATC 1 cut(s) 218
AcsI RAATTY 3 cut(s) 367, 431, 473
AcuI CTGAAG 3 cut(s) 33, 173, 333
AcyI GRCGYC 1 cut(s) 993
AdeI CACNNNGTG 1 cut(s) 427
AfiI CCNNNNNNNGG 3 cut(s) 590, 989, 1002
AflIII ACRYGT 1 cut(s) 1009
AgsI TTSAA 8 cut(s) 142, 259, 473, 540, 560, 689, 721, 1126
AhdI GACNNNNNGTC 2 cut(s) 867, 919
AjnI CCWGG 3 cut(s) 228, 831, 898
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AluBI AGCT 7 cut(s) 8, 47, 53, 245, 521, 647, 749
AluI AGCT 7 cut(s) 8, 47, 53, 245, 521, 647, 749
Alw21I GWGCWC 2 cut(s) 247, 602
AlwI GGATC 1 cut(s) 218
Ama87I CYCGRG 2 cut(s) 446, 595
AoxI GGCC 5 cut(s) 22, 592, 733, 829, 1154
ApeKI GCWGC 3 cut(s) 5, 335, 518
ApoI RAATTY 3 cut(s) 367, 431, 473
ArsI GACNNNNNNTTYG 2 cut(s) 271, 303
AspLEI GCGC 1 cut(s) 995
AspS9I GGNCC 3 cut(s) 22, 593, 1154
AsuHPI GGTGA 1 cut(s) 418
AsuII TTCGAA 2 cut(s) 365, 742
AvaI CYCGRG 2 cut(s) 446, 595
BanI GGYRCC 1 cut(s) 992
BanII GRGCYC 1 cut(s) 247
BbsI GAAGAC 2 cut(s) 149, 557
Bbv12I GWGCWC 2 cut(s) 247, 602
BbvI GCAGC 3 cut(s) 17, 322, 530
BccI CCATC 6 cut(s) 80, 143, 396, 769, 983, 1025
BciT130I CCWGG 3 cut(s) 230, 833, 900
BfaI CTAG 2 cut(s) 219, 948
BfmI CTRYAG 2 cut(s) 630, 1149
BfoI RGCGCY 1 cut(s) 996
BisI GCNGC 4 cut(s) 6, 336, 519, 829
BlsI GCNGC 4 cut(s) 7, 337, 520, 830
Bme1390I CCNGG 3 cut(s) 230, 833, 900
BmeRI GACNNNNNGTC 2 cut(s) 867, 919
BmeT110I CYCGRG 2 cut(s) 446, 595
BmgT120I GGNCC 3 cut(s) 22, 593, 1154
BmiI GGNNCC 1 cut(s) 994
BmrFI CCNGG 3 cut(s) 230, 833, 900
BmsI GCATC 4 cut(s) 604, 766, 793, 1099
BpiI GAAGAC 2 cut(s) 149, 557
Bpu10I CCTNAGC 1 cut(s) 26
Bpu14I TTCGAA 2 cut(s) 365, 742
BpuEI CTTGAG 1 cut(s) 636
BsaAI YACGTR 1 cut(s) 911
BsaHI GRCGYC 1 cut(s) 993
BsaJI CCNNGG 4 cut(s) 228, 267, 899, 1176
Bsc4I CCNNNNNNNGG 3 cut(s) 590, 989, 1002
Bse1I ACTGG 2 cut(s) 783, 936
Bse3DI GCAATG 2 cut(s) 99, 301
BseBI CCWGG 3 cut(s) 230, 833, 900
BseDI CCNNGG 4 cut(s) 228, 267, 899, 1176
BseGI GGATG 3 cut(s) 414, 757, 1166
BseLI CCNNNNNNNGG 3 cut(s) 590, 989, 1002
BseMI GCAATG 2 cut(s) 99, 301
BseMII CTCAG 2 cut(s) 17, 156
BseNI ACTGG 2 cut(s) 783, 936
BseRI GAGGAG 1 cut(s) 800
BseXI GCAGC 3 cut(s) 17, 322, 530
BsgI GTGCAG 1 cut(s) 537
BshFI GGCC 5 cut(s) 24, 594, 735, 831, 1156
BshNI GGYRCC 1 cut(s) 992
BsiHKAI GWGCWC 2 cut(s) 247, 602
BsiHKCI CYCGRG 2 cut(s) 446, 595
BsiSI CCGG 1 cut(s) 584
BslI CCNNNNNNNGG 3 cut(s) 590, 989, 1002
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 5 cut(s) 24, 594, 735, 831, 1156
BsoBI CYCGRG 2 cut(s) 446, 595
Bsp119I TTCGAA 2 cut(s) 365, 742
Bsp1286I GDGCHC 2 cut(s) 247, 602
Bsp143I GATC 2 cut(s) 223, 955
BspACI CCGC 4 cut(s) 104, 147, 828, 1088
BspANI GGCC 5 cut(s) 24, 594, 735, 831, 1156
BspCNI CTCAG 2 cut(s) 18, 157
BspHI TCATGA 1 cut(s) 1140
BspLI GGNNCC 1 cut(s) 994
BspMAI CTGCAG 1 cut(s) 1153
BspPI GGATC 1 cut(s) 218
BspT104I TTCGAA 2 cut(s) 365, 742
BspT107I GGYRCC 1 cut(s) 992
BsrDI GCAATG 2 cut(s) 99, 301
BsrI ACTGG 2 cut(s) 783, 936
BssECI CCNNGG 4 cut(s) 228, 267, 899, 1176
BssMI GATC 2 cut(s) 223, 955
BssNI GRCGYC 1 cut(s) 993
BssT1I CCWWGG 2 cut(s) 267, 1176
Bst2UI CCWGG 3 cut(s) 230, 833, 900
Bst4CI ACNGT 5 cut(s) 283, 556, 773, 869, 1186
Bst6I CTCTTC 1 cut(s) 1100
BstACI GRCGYC 1 cut(s) 993
BstBAI YACGTR 1 cut(s) 911
BstBI TTCGAA 2 cut(s) 365, 742
BstC8I GCNNGC 3 cut(s) 121, 235, 592
BstDEI CTNAG 3 cut(s) 26, 165, 522
BstF5I GGATG 3 cut(s) 414, 757, 1166
BstH2I RGCGCY 1 cut(s) 996
BstHHI GCGC 1 cut(s) 995
BstKTI GATC 2 cut(s) 226, 958
BstMBI GATC 2 cut(s) 223, 955
BstNI CCWGG 3 cut(s) 230, 833, 900
BstNSI RCATGY 2 cut(s) 237, 395
BstSCI CCNGG 3 cut(s) 228, 831, 898
BstSFI CTRYAG 2 cut(s) 630, 1149
BstV1I GCAGC 3 cut(s) 17, 322, 530
BstV2I GAAGAC 2 cut(s) 149, 557
BsuRI GGCC 5 cut(s) 24, 594, 735, 831, 1156
BtsCI GGATG 3 cut(s) 414, 757, 1166
BtsIMutI CAGTG 2 cut(s) 197, 1098
Cac8I GCNNGC 3 cut(s) 121, 235, 592
CciI TCATGA 1 cut(s) 1140
CfoI GCGC 1 cut(s) 995
Cfr13I GGNCC 3 cut(s) 22, 593, 1154
CviAII CATG 3 cut(s) 234, 392, 1141
DdeI CTNAG 3 cut(s) 26, 165, 522
DinI GGCGCC 1 cut(s) 994
DpnI GATC 2 cut(s) 225, 957
DpnII GATC 2 cut(s) 223, 955
DraIII CACNNNGTG 1 cut(s) 427
DriI GACNNNNNGTC 2 cut(s) 867, 919
Eam1104I CTCTTC 1 cut(s) 1100
Eam1105I GACNNNNNGTC 2 cut(s) 867, 919
EarI CTCTTC 1 cut(s) 1100
Ecl136II GAGCTC 1 cut(s) 245
Eco130I CCWWGG 2 cut(s) 267, 1176
Eco24I GRGCYC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 245
Eco57I CTGAAG 3 cut(s) 33, 173, 333
Eco88I CYCGRG 2 cut(s) 446, 595
EcoICRI GAGCTC 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 1154
EcoRI GAATTC 1 cut(s) 367
EcoRII CCWGG 3 cut(s) 228, 831, 898
EcoT14I CCWWGG 2 cut(s) 267, 1176
EcoT38I GRGCYC 1 cut(s) 247
EgeI GGCGCC 1 cut(s) 994
EheI GGCGCC 1 cut(s) 994
ErhI CCWWGG 2 cut(s) 267, 1176
FaeI CATG 3 cut(s) 237, 395, 1144
FaiI YATR 7 cut(s) 58, 204, 235, 393, 486, 725, 1142
FatI CATG 3 cut(s) 233, 391, 1140
Fnu4HI GCNGC 4 cut(s) 6, 336, 519, 829
FokI GGATG 3 cut(s) 401, 744, 1153
FriOI GRGCYC 1 cut(s) 247
Fsp4HI GCNGC 4 cut(s) 6, 336, 519, 829
FspBI CTAG 2 cut(s) 219, 948
GlaI GCGC 1 cut(s) 994
GluI GCNGC 4 cut(s) 6, 336, 519, 829
HaeII RGCGCY 1 cut(s) 996
HaeIII GGCC 5 cut(s) 24, 594, 735, 831, 1156
HapII CCGG 1 cut(s) 584
HhaI GCGC 1 cut(s) 995
Hin1I GRCGYC 1 cut(s) 993
Hin1II CATG 3 cut(s) 237, 395, 1144
Hin6I GCGC 1 cut(s) 993
HinP1I GCGC 1 cut(s) 993
HindIII AAGCTT 1 cut(s) 747
HinfI GANTC 1 cut(s) 536
HpaII CCGG 1 cut(s) 584
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 2 cut(s) 303, 776
Hpy188I TCNGA 4 cut(s) 249, 313, 373, 925
Hpy188III TCNNGA 5 cut(s) 139, 448, 653, 851, 1141
Hpy8I GTNNAC 2 cut(s) 303, 776
Hpy99I CGWCG 1 cut(s) 873
HpyAV CCTTC 2 cut(s) 520, 920
HpyCH4III ACNGT 5 cut(s) 283, 556, 773, 869, 1186
HpyCH4IV ACGT 5 cut(s) 426, 495, 910, 915, 1009
HpyF3I CTNAG 3 cut(s) 26, 165, 522
HpySE526I ACGT 5 cut(s) 426, 495, 910, 915, 1009
Hsp92I GRCGYC 1 cut(s) 993
Hsp92II CATG 3 cut(s) 237, 395, 1144
HspAI GCGC 1 cut(s) 993
KasI GGCGCC 1 cut(s) 992
Kzo9I GATC 2 cut(s) 223, 955
LmnI GCTCC 2 cut(s) 242, 984
Lsp1109I GCAGC 3 cut(s) 17, 322, 530
LweI GCATC 4 cut(s) 604, 766, 793, 1099
MaeI CTAG 2 cut(s) 219, 948
MaeII ACGT 5 cut(s) 426, 495, 910, 915, 1009
MaeIII GTNAC 2 cut(s) 406, 911
MalI GATC 2 cut(s) 225, 957
MboI GATC 2 cut(s) 223, 955
MboII GAAGA 9 cut(s) 119, 154, 463, 562, 670, 866, 965, 1055, 1087
MfeI CAATTG 1 cut(s) 38
MhlI GDGCHC 2 cut(s) 247, 602
MluCI AATT 8 cut(s) 38, 114, 367, 431, 473, 809, 857, 905
Mly113I GGCGCC 1 cut(s) 993
MmeI TCCRAC 2 cut(s) 220, 1053
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 3 cut(s) 230, 833, 900
MunI CAATTG 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 343
MvaI CCWGG 3 cut(s) 230, 833, 900
NarI GGCGCC 1 cut(s) 993
NdeII GATC 2 cut(s) 223, 955
NlaIII CATG 3 cut(s) 237, 395, 1144
NlaIV GGNNCC 1 cut(s) 994
NmuCI GTSAC 2 cut(s) 406, 911
NspI RCATGY 2 cut(s) 237, 395
NspV TTCGAA 2 cut(s) 365, 742
PaeI GCATGC 1 cut(s) 237
PaeR7I CTCGAG 1 cut(s) 446
PagI TCATGA 1 cut(s) 1140
PctI GAATGC 1 cut(s) 343
PfeI GAWTC 1 cut(s) 536
PkrI GCNGC 4 cut(s) 7, 337, 520, 830
PluTI GGCGCC 1 cut(s) 996
Ppu21I YACGTR 1 cut(s) 911
Psp124BI GAGCTC 1 cut(s) 247
Psp6I CCWGG 3 cut(s) 228, 831, 898
PspGI CCWGG 3 cut(s) 228, 831, 898
PspN4I GGNNCC 1 cut(s) 994
PspPI GGNCC 3 cut(s) 22, 593, 1154
PsrI GAACNNNNNNTAC 2 cut(s) 613, 645
PstI CTGCAG 1 cut(s) 1153
SacI GAGCTC 1 cut(s) 247
SatI GCNGC 4 cut(s) 6, 336, 519, 829
Sau3AI GATC 2 cut(s) 223, 955
Sau96I GGNCC 3 cut(s) 22, 593, 1154
ScrFI CCNGG 3 cut(s) 230, 833, 900
SduI GDGCHC 2 cut(s) 247, 602
SfaNI GCATC 4 cut(s) 604, 766, 793, 1099
SfcI CTRYAG 2 cut(s) 630, 1149
SfoI GGCGCC 1 cut(s) 994
Sfr274I CTCGAG 1 cut(s) 446
SfuI TTCGAA 2 cut(s) 365, 742
SlaI CTCGAG 1 cut(s) 446
SmlI CTYRAG 2 cut(s) 446, 651
SmoI CTYRAG 2 cut(s) 446, 651
SphI GCATGC 1 cut(s) 237
Sse9I AATT 8 cut(s) 38, 114, 367, 431, 473, 809, 857, 905
SsiI CCGC 4 cut(s) 104, 147, 828, 1088
SspDI GGCGCC 1 cut(s) 992
SspMI CTAG 2 cut(s) 219, 948
SstI GAGCTC 1 cut(s) 247
StyD4I CCNGG 3 cut(s) 228, 831, 898
StyI CCWWGG 2 cut(s) 267, 1176
TaaI ACNGT 5 cut(s) 283, 556, 773, 869, 1186
TaiI ACGT 5 cut(s) 429, 498, 913, 918, 1012
TaqI TCGA 3 cut(s) 365, 447, 742
TasI AATT 8 cut(s) 38, 114, 367, 431, 473, 809, 857, 905
TauI GCSGC 1 cut(s) 831
TfiI GAWTC 1 cut(s) 536
TscAI CASTG 2 cut(s) 197, 1105
TseFI GTSAC 2 cut(s) 406, 911
TseI GCWGC 3 cut(s) 5, 335, 518
Tsp45I GTSAC 2 cut(s) 406, 911
TspDTI ATGAA 4 cut(s) 126, 276, 336, 1129
TspRI CASTG 2 cut(s) 197, 1105
XapI RAATTY 3 cut(s) 367, 431, 473
XceI RCATGY 2 cut(s) 237, 395
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XhoI CTCGAG 1 cut(s) 446
XspI CTAG 2 cut(s) 219, 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.