Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0012158

Physical Location & Seq

Genomic Coordinates Forward (+)

61140235 .. 61145199

Gene Structure 4965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG379700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCAGCTAATGGAAGCGTGGGCCTGAGCAGAGAGCAATTGATAGCTTCAGCTCTATGCAAATACTTTTCCATCGATCCTAAAACATTCCCAGAAAACATTGCGGGAGATCATTTTGCAAGCTCCTACTTGACCATCTTGAAGACGGCCAAAAAGGAAGCCCCTGAGAAAGTGAATGATGAGGTGCTTAAGTGGATAAAATATGCAGAGGGGTTTCGTAGTGATCCCCAGGCATGCGTTGGAGCTCTGAAAGAGTTGAATGAAACCTTGGCTGACAGGACTGTGCTTTTGGGCAATGGGTTCACACCTTCTGAAGCCGATGTTAGTGTGTTTGCTGCTGTGCATTCATCTGTGATTGGTCTTTTGAATTCAGATAGGAAAAAGTTTCAGCATGTATTGAGATGGGCGACACACATCCAGCACAACGTGGATTTTGGAAACTTACTCGAGAAGATAGTGGTAGAGGAAGTTGAATTTGATTTCCATAAGTTAGACATTTTGCTGAAACCAAAAAGTGCAGCTAAGGAGGAAGTAGATTCAAATGCAAGGATGACTGTTCAAAGCACAAAAAGTGCTGACAAGCTGGAAGCAGGCCCGAGCACAAAGAAAAGTGATTCAGTAACAAAGACTACAGGAGATAAGAAAGCTACTCAAGAGAATAAAAAATCAGCAGAGGTAGAGGCAGTTGAAAAAGATAAAGAAGTTAGTGTCAGTTTGTTGAATATACAGGTTGGCCTCATTCGAAAAGCTTGGAAGCATCCATCTGCTGACAGTTTACTGGTTGAGGAGATAGATGTGGGAGATGCTAAATTGAGGCAAGTGGTAAGCGGCCTGGCAAAGTTTTGCAGTCCAGAAGAATTGACGAACCGTCGTGTTGTGCTGATTACAAACGTGAAACCTGGGAAATTACGTGACGTAATGTCAGAAGGACTGGTGCTGTGTGCTTCTAGTGAAGATCACACCCTTGTAGAGCCTTTGCTCCCCCCAGAAGGTGCCAAAATCGGGGAACGTGTCGTATTTTCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C tRNA_bind

Protein Analysis

342

Amino Acids

37.38

Weight (kDa)

6.13

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arc1p_N_like	PF21972	82 - 142	7.4e-12	Nuclear-export cofactor Arc1p
tRNA_bind	PF01588	242 - 337	2.2e-26	Putative tRNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40660
fragaria_vesca	FvH4_7g25960
malus_domestica	MD01G1168000.v1.1 MD07G1234000.v1.1
prunus_persica	Prupe.2G264400_v2.0.a1
pyrus_communis	pycom01g18100 pycom07g21180
rosa_chinensis	RchiOBHm_Chr1g0372341
rosa_laevigata	RLG00000026906
rosa_multiflora	Rmu_sc0001755.1_g000007
rosa_roxburghii	Rroxscaffold_4G00285030
rosa_rugosa	Rorug01G0371300 Rorug01G0371300 Rorug01G0371300
rosa_samantha	Rh1AG379700 Rh1BG343200 Rh1CG356700 Rh1DG374400
rosa_wichuraiana	Rw1G033380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	992
AciI	CCGC	2 cut(s)	104, 828
AclWI	GGATC	2 cut(s)	71, 218
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	2 cut(s)	367, 473
AcuI	CTGAAG	2 cut(s)	33, 333
AdeI	CACNNNGTG	1 cut(s)	427
AfiI	CCNNNNNNNGG	2 cut(s)	989, 1002
AflII	CTTAAG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	1009
AgsI	TTSAA	8 cut(s)	142, 259, 367, 473, 540, 560, 689, 721
AhdI	GACNNNNNGTC	2 cut(s)	867, 919
AjnI	CCWGG	3 cut(s)	228, 831, 898
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	9 cut(s)	8, 47, 53, 123, 245, 521, 583, 647, 749
AluI	AGCT	9 cut(s)	8, 47, 53, 123, 245, 521, 583, 647, 749
Alw21I	GWGCWC	2 cut(s)	247, 602
AlwI	GGATC	2 cut(s)	71, 218
Ama87I	CYCGRG	2 cut(s)	446, 595
AoxI	GGCC	5 cut(s)	22, 147, 592, 733, 829
ApeKI	GCWGC	3 cut(s)	5, 335, 518
ApoI	RAATTY	2 cut(s)	367, 473
ArsI	GACNNNNNNTTYG	2 cut(s)	271, 303
AspS9I	GGNCC	2 cut(s)	22, 593
AsuII	TTCGAA	1 cut(s)	742
AvaI	CYCGRG	2 cut(s)	446, 595
BanI	GGYRCC	1 cut(s)	992
BanII	GRGCYC	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	2 cut(s)	247, 602
BbvI	GCAGC	3 cut(s)	17, 322, 530
BccI	CCATC	4 cut(s)	80, 143, 396, 769
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	3 cut(s)	230, 833, 900
BfaI	CTAG	1 cut(s)	948
BfmI	CTRYAG	1 cut(s)	630
BfrI	CTTAAG	1 cut(s)	188
BisI	GCNGC	4 cut(s)	6, 336, 519, 829
BlsI	GCNGC	4 cut(s)	7, 337, 520, 830
Bme1390I	CCNGG	3 cut(s)	230, 833, 900
BmeRI	GACNNNNNGTC	2 cut(s)	867, 919
BmeT110I	CYCGRG	2 cut(s)	446, 595
BmgT120I	GGNCC	2 cut(s)	22, 593
BmiI	GGNNCC	1 cut(s)	994
BmrFI	CCNGG	3 cut(s)	230, 833, 900
BmsI	GCATC	2 cut(s)	766, 793
BpiI	GAAGAC	1 cut(s)	149
Bpu10I	CCTNAGC	2 cut(s)	26, 522
Bpu14I	TTCGAA	1 cut(s)	742
BpuEI	CTTGAG	1 cut(s)	636
Bsa29I	ATCGAT	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	911
BsaJI	CCNNGG	3 cut(s)	228, 267, 899
Bsc4I	CCNNNNNNNGG	2 cut(s)	989, 1002
Bse1I	ACTGG	2 cut(s)	783, 936
Bse3DI	GCAATG	2 cut(s)	99, 301
BseBI	CCWGG	3 cut(s)	230, 833, 900
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	3 cut(s)	228, 267, 899
BseGI	GGATG	3 cut(s)	414, 555, 757
BseLI	CCNNNNNNNGG	2 cut(s)	989, 1002
BseMI	GCAATG	2 cut(s)	99, 301
BseMII	CTCAG	2 cut(s)	17, 156
BseNI	ACTGG	2 cut(s)	783, 936
BseRI	GAGGAG	1 cut(s)	800
BseXI	GCAGC	3 cut(s)	17, 322, 530
BsgI	GTGCAG	1 cut(s)	537
BshFI	GGCC	5 cut(s)	24, 149, 594, 735, 831
BshNI	GGYRCC	1 cut(s)	992
BshVI	ATCGAT	1 cut(s)	75
BsiHKAI	GWGCWC	2 cut(s)	247, 602
BsiHKCI	CYCGRG	2 cut(s)	446, 595
BslI	CCNNNNNNNGG	2 cut(s)	989, 1002
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	5 cut(s)	24, 149, 594, 735, 831
BsoBI	CYCGRG	2 cut(s)	446, 595
Bsp119I	TTCGAA	1 cut(s)	742
Bsp1286I	GDGCHC	2 cut(s)	247, 602
Bsp143I	GATC	4 cut(s)	76, 109, 223, 955
BspACI	CCGC	2 cut(s)	104, 828
BspANI	GGCC	5 cut(s)	24, 149, 594, 735, 831
BspCNI	CTCAG	2 cut(s)	18, 157
BspDI	ATCGAT	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	994
BspPI	GGATC	2 cut(s)	71, 218
BspT104I	TTCGAA	1 cut(s)	742
BspT107I	GGYRCC	1 cut(s)	992
BspTI	CTTAAG	1 cut(s)	188
BsrDI	GCAATG	2 cut(s)	99, 301
BsrI	ACTGG	2 cut(s)	783, 936
BssECI	CCNNGG	3 cut(s)	228, 267, 899
BssMI	GATC	4 cut(s)	76, 109, 223, 955
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	3 cut(s)	230, 833, 900
Bst4CI	ACNGT	4 cut(s)	283, 556, 773, 869
BstAFI	CTTAAG	1 cut(s)	188
BstBAI	YACGTR	1 cut(s)	911
BstBI	TTCGAA	1 cut(s)	742
BstC8I	GCNNGC	3 cut(s)	121, 235, 592
BstDEI	CTNAG	3 cut(s)	26, 165, 522
BstF5I	GGATG	3 cut(s)	414, 555, 757
BstKTI	GATC	4 cut(s)	79, 112, 226, 958
BstMBI	GATC	4 cut(s)	76, 109, 223, 955
BstNI	CCWGG	3 cut(s)	230, 833, 900
BstNSI	RCATGY	2 cut(s)	237, 395
BstSCI	CCNGG	3 cut(s)	228, 831, 898
BstSFI	CTRYAG	1 cut(s)	630
BstV1I	GCAGC	3 cut(s)	17, 322, 530
BstV2I	GAAGAC	1 cut(s)	149
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	5 cut(s)	24, 149, 594, 735, 831
BsuTUI	ATCGAT	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	414, 555, 757
Cac8I	GCNNGC	3 cut(s)	121, 235, 592
Cfr13I	GGNCC	2 cut(s)	22, 593
ClaI	ATCGAT	1 cut(s)	75
CviAII	CATG	2 cut(s)	234, 392
DdeI	CTNAG	3 cut(s)	26, 165, 522
DpnI	GATC	4 cut(s)	78, 111, 225, 957
DpnII	GATC	4 cut(s)	76, 109, 223, 955
DraIII	CACNNNGTG	1 cut(s)	427
DriI	GACNNNNNGTC	2 cut(s)	867, 919
EaeI	YGGCCR	1 cut(s)	147
Eam1105I	GACNNNNNGTC	2 cut(s)	867, 919
Ecl136II	GAGCTC	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	247
Eco53kI	GAGCTC	1 cut(s)	245
Eco57I	CTGAAG	2 cut(s)	33, 333
Eco88I	CYCGRG	2 cut(s)	446, 595
EcoICRI	GAGCTC	1 cut(s)	245
EcoRI	GAATTC	1 cut(s)	367
EcoRII	CCWGG	3 cut(s)	228, 831, 898
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	2 cut(s)	237, 395
FaiI	YATR	6 cut(s)	58, 204, 235, 393, 486, 725
FatI	CATG	2 cut(s)	233, 391
FauI	CCCGC	1 cut(s)	97
Fnu4HI	GCNGC	4 cut(s)	6, 336, 519, 829
FokI	GGATG	3 cut(s)	401, 562, 744
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	4 cut(s)	6, 336, 519, 829
FspBI	CTAG	1 cut(s)	948
GluI	GCNGC	4 cut(s)	6, 336, 519, 829
HaeIII	GGCC	5 cut(s)	24, 149, 594, 735, 831
Hin1II	CATG	2 cut(s)	237, 395
HindIII	AAGCTT	1 cut(s)	747
HinfI	GANTC	2 cut(s)	536, 614
Hpy166II	GTNNAC	2 cut(s)	303, 776
Hpy188I	TCNGA	4 cut(s)	249, 313, 373, 925
Hpy188III	TCNNGA	4 cut(s)	139, 448, 653, 851
Hpy8I	GTNNAC	2 cut(s)	303, 776
Hpy99I	CGWCG	1 cut(s)	873
HpyAV	CCTTC	3 cut(s)	318, 920, 983
HpyCH4III	ACNGT	4 cut(s)	283, 556, 773, 869
HpyCH4IV	ACGT	5 cut(s)	426, 891, 910, 915, 1009
HpyCH4V	TGCA	7 cut(s)	60, 119, 206, 343, 518, 545, 846
HpyF3I	CTNAG	3 cut(s)	26, 165, 522
HpySE526I	ACGT	5 cut(s)	426, 891, 910, 915, 1009
Hsp92II	CATG	2 cut(s)	237, 395
Kzo9I	GATC	4 cut(s)	76, 109, 223, 955
LmnI	GCTCC	3 cut(s)	128, 242, 984
Lsp1109I	GCAGC	3 cut(s)	17, 322, 530
LweI	GCATC	2 cut(s)	766, 793
MaeI	CTAG	1 cut(s)	948
MaeII	ACGT	5 cut(s)	426, 891, 910, 915, 1009
MaeIII	GTNAC	2 cut(s)	619, 911
MalI	GATC	4 cut(s)	78, 111, 225, 957
MboI	GATC	4 cut(s)	76, 109, 223, 955
MboII	GAAGA	4 cut(s)	154, 463, 866, 965
MfeI	CAATTG	1 cut(s)	38
MhlI	GDGCHC	2 cut(s)	247, 602
MluCI	AATT	6 cut(s)	38, 367, 473, 809, 857, 905
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	9 cut(s)	175, 202, 457, 520, 667, 673, 746, 778, 807
MseI	TTAA	1 cut(s)	189
MspCI	CTTAAG	1 cut(s)	188
MspR9I	CCNGG	3 cut(s)	230, 833, 900
MunI	CAATTG	1 cut(s)	38
Mva1269I	GAATGC	1 cut(s)	343
MvaI	CCWGG	3 cut(s)	230, 833, 900
NdeII	GATC	4 cut(s)	76, 109, 223, 955
NlaIII	CATG	2 cut(s)	237, 395
NlaIV	GGNNCC	1 cut(s)	994
NmuCI	GTSAC	1 cut(s)	911
NspI	RCATGY	2 cut(s)	237, 395
NspV	TTCGAA	1 cut(s)	742
PaeI	GCATGC	1 cut(s)	237
PaeR7I	CTCGAG	1 cut(s)	446
PctI	GAATGC	1 cut(s)	343
PfeI	GAWTC	2 cut(s)	536, 614
PkrI	GCNGC	4 cut(s)	7, 337, 520, 830
Ppu21I	YACGTR	1 cut(s)	911
Psp124BI	GAGCTC	1 cut(s)	247
Psp6I	CCWGG	3 cut(s)	228, 831, 898
PspGI	CCWGG	3 cut(s)	228, 831, 898
PspN4I	GGNNCC	1 cut(s)	994
PspPI	GGNCC	2 cut(s)	22, 593
SacI	GAGCTC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	4 cut(s)	6, 336, 519, 829
Sau3AI	GATC	4 cut(s)	76, 109, 223, 955
Sau96I	GGNCC	2 cut(s)	22, 593
ScrFI	CCNGG	3 cut(s)	230, 833, 900
SduI	GDGCHC	2 cut(s)	247, 602
SfaNI	GCATC	2 cut(s)	766, 793
SfcI	CTRYAG	1 cut(s)	630
Sfr274I	CTCGAG	1 cut(s)	446
SfuI	TTCGAA	1 cut(s)	742
SlaI	CTCGAG	1 cut(s)	446
SmlI	CTYRAG	3 cut(s)	188, 446, 651
SmoI	CTYRAG	3 cut(s)	188, 446, 651
SphI	GCATGC	1 cut(s)	237
Sse9I	AATT	6 cut(s)	38, 367, 473, 809, 857, 905
SsiI	CCGC	2 cut(s)	104, 828
SspMI	CTAG	1 cut(s)	948
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	3 cut(s)	228, 831, 898
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	4 cut(s)	283, 556, 773, 869
TaiI	ACGT	5 cut(s)	429, 894, 913, 918, 1012
TaqI	TCGA	3 cut(s)	75, 447, 742
TasI	AATT	6 cut(s)	38, 367, 473, 809, 857, 905
TauI	GCSGC	1 cut(s)	831
TfiI	GAWTC	2 cut(s)	536, 614
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	911
TseI	GCWGC	3 cut(s)	5, 335, 518
Tsp45I	GTSAC	1 cut(s)	911
TspDTI	ATGAA	2 cut(s)	276, 336
Vha464I	CTTAAG	1 cut(s)	188
XapI	RAATTY	2 cut(s)	367, 473
XceI	RCATGY	2 cut(s)	237, 395
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XhoI	CTCGAG	1 cut(s)	446
XspI	CTAG	1 cut(s)	948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.