Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0012158

Physical Location & Seq

Genomic Coordinates Forward (+)

61474668 .. 61478972

Gene Structure 4305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G033380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCAGCTAATGGAAGCGTGGGCCTGAGCAGAAAGCAATTGATAGCTTCAGCTCTATGCAAATACTTTTCCATCGATCCTAAAACATTCCCAGAAAACATTGCGGAAGATGAATTTGCAAGCTCCTACTTGACCATCTTGAAGACGGCCAAAAAGGAAGCCCTGAGAAATGATCCCCAGGCATGCGTTGGAGCTCTGAAAGAGTTGAATGAAACCTTGGCTGACAGGACTGTGCTTTTGGGCAATGGGTTCACACCTTCTGAAGCCGATGTTAGTGTGTTTGCTGCTGTGCATTCATCTGTGGAAAAGTTTCAGCATGTATTGAGATGGGCGACACACATCCAGCACAACGTGGATTTTGGAAACTTACTCGAGAAGATAGTGGTAGAGGAAGTTGAATTTGATTTCCATAAGTTAGACATTTTGCTGAAACCAAAAAGTGCAGCTAAGGAGGAAGTAGATTCAAATGCAAGGATGACTGTTCAAAGCACAAAAAGTGCTGACAAGCCGGAAGCAGGCCCGAGCACAAAGAAAAGTGATTCAGGAACAAAGACTACAGGAGATAAGAAAGCTACTCAAGAGAATAAAAAATCAGCAGAGGTAGAGGCAGTTGAAAAAGATAAAGAAGTTAGTGTCAGTTTGTTGAATATACAGGTTGGCCTCATTCGAAAAGCTTGGAAGCATCCATCTGCTGACAGTTTACTGGTTGAGGAGATAGATGTGGGAGATGCTAAATTGAGGCAAGTGGTAAGCGGCCTGGCAAAGTTTTGCAGTCCAGAAGAATTGACGAACCGTCGTGTTGTGCTGATTACAAACGTGAAACCTGGGAAATTACGTGACGTAATGTCAGAAGGACTGGTGCTGTGTGCTTCTAGTGAAGATCACACCCTTGTAGAGCCTTTGCTCCCCCCAGAAGGTGCCAAAATCGGGGAACGTGTTGTATTTTCTGGGATTGATGGAAAGCCAGAAGATGTCCTCAACCCAAAAAAGAAGCAGTTGGATAAGATTACACCGCATCTCTTCACTGATGACAAGGGTGTTGCTACATTCAAGGGTATTCCTTTCATGACATCTGCAGGGCCTTGCACATCGTCCATTTCCAAGGGAACTGTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C tRNA_bind

Protein Analysis

372

Amino Acids

40.38

Weight (kDa)

6.49

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arc1p_N_like	PF21972	65 - 117	6.7e-08	Nuclear-export cofactor Arc1p
tRNA_bind	PF01588	217 - 312	2.6e-26	Putative tRNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40660
fragaria_vesca	FvH4_7g25960
malus_domestica	MD01G1168000.v1.1 MD07G1234000.v1.1
prunus_persica	Prupe.2G264400_v2.0.a1
pyrus_communis	pycom01g18100 pycom07g21180
rosa_chinensis	RchiOBHm_Chr1g0372341
rosa_laevigata	RLG00000026906
rosa_multiflora	Rmu_sc0001755.1_g000007
rosa_roxburghii	Rroxscaffold_4G00285030
rosa_rugosa	Rorug01G0371300 Rorug01G0371300 Rorug01G0371300
rosa_samantha	Rh1AG379700 Rh1BG343200 Rh1CG356700 Rh1DG374400
rosa_wichuraiana	Rw1G033380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	917
AciI	CCGC	3 cut(s)	104, 753, 1013
AclWI	GGATC	2 cut(s)	71, 167
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	2 cut(s)	113, 398
AcuI	CTGAAG	2 cut(s)	33, 282
AdeI	CACNNNGTG	1 cut(s)	352
AfiI	CCNNNNNNNGG	3 cut(s)	515, 914, 927
AflIII	ACRYGT	1 cut(s)	934
AgsI	TTSAA	8 cut(s)	142, 208, 398, 465, 485, 614, 646, 1051
AhdI	GACNNNNNGTC	2 cut(s)	792, 844
AjnI	CCWGG	3 cut(s)	177, 756, 823
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	8 cut(s)	8, 47, 53, 123, 194, 446, 572, 674
AluI	AGCT	8 cut(s)	8, 47, 53, 123, 194, 446, 572, 674
Alw21I	GWGCWC	2 cut(s)	196, 527
AlwI	GGATC	2 cut(s)	71, 167
Ama87I	CYCGRG	2 cut(s)	371, 520
AoxI	GGCC	6 cut(s)	22, 147, 517, 658, 754, 1079
ApeKI	GCWGC	3 cut(s)	5, 284, 443
ApoI	RAATTY	2 cut(s)	113, 398
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
Asp700I	GAANNNNTTC	1 cut(s)	309
AspS9I	GGNCC	3 cut(s)	22, 518, 1079
AsuII	TTCGAA	1 cut(s)	667
AvaI	CYCGRG	2 cut(s)	371, 520
BanI	GGYRCC	1 cut(s)	917
BanII	GRGCYC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	2 cut(s)	196, 527
BbvI	GCAGC	3 cut(s)	17, 271, 455
BccI	CCATC	5 cut(s)	80, 143, 321, 694, 950
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	3 cut(s)	179, 758, 825
BfaI	CTAG	1 cut(s)	873
BfmI	CTRYAG	2 cut(s)	555, 1074
BisI	GCNGC	4 cut(s)	6, 285, 444, 754
BlsI	GCNGC	4 cut(s)	7, 286, 445, 755
Bme1390I	CCNGG	3 cut(s)	179, 758, 825
BmeRI	GACNNNNNGTC	2 cut(s)	792, 844
BmeT110I	CYCGRG	2 cut(s)	371, 520
BmgT120I	GGNCC	3 cut(s)	22, 518, 1079
BmiI	GGNNCC	1 cut(s)	919
BmrFI	CCNGG	3 cut(s)	179, 758, 825
BmsI	GCATC	3 cut(s)	691, 718, 1024
BpiI	GAAGAC	1 cut(s)	149
Bpu10I	CCTNAGC	2 cut(s)	26, 447
Bpu14I	TTCGAA	1 cut(s)	667
BpuEI	CTTGAG	1 cut(s)	561
Bsa29I	ATCGAT	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	836
BsaJI	CCNNGG	4 cut(s)	177, 216, 824, 1101
Bsc4I	CCNNNNNNNGG	3 cut(s)	515, 914, 927
Bse1I	ACTGG	2 cut(s)	708, 861
Bse3DI	GCAATG	2 cut(s)	99, 250
BseBI	CCWGG	3 cut(s)	179, 758, 825
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	4 cut(s)	177, 216, 824, 1101
BseGI	GGATG	3 cut(s)	339, 480, 682
BseLI	CCNNNNNNNGG	3 cut(s)	515, 914, 927
BseMI	GCAATG	2 cut(s)	99, 250
BseMII	CTCAG	2 cut(s)	17, 155
BseNI	ACTGG	2 cut(s)	708, 861
BseRI	GAGGAG	1 cut(s)	725
BseXI	GCAGC	3 cut(s)	17, 271, 455
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	6 cut(s)	24, 149, 519, 660, 756, 1081
BshNI	GGYRCC	1 cut(s)	917
BshVI	ATCGAT	1 cut(s)	75
BsiHKAI	GWGCWC	2 cut(s)	196, 527
BsiHKCI	CYCGRG	2 cut(s)	371, 520
BsiSI	CCGG	1 cut(s)	509
BslI	CCNNNNNNNGG	3 cut(s)	515, 914, 927
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	6 cut(s)	24, 149, 519, 660, 756, 1081
BsoBI	CYCGRG	2 cut(s)	371, 520
Bsp119I	TTCGAA	1 cut(s)	667
Bsp1286I	GDGCHC	2 cut(s)	196, 527
Bsp143I	GATC	3 cut(s)	76, 172, 880
BspACI	CCGC	3 cut(s)	104, 753, 1013
BspANI	GGCC	6 cut(s)	24, 149, 519, 660, 756, 1081
BspCNI	CTCAG	2 cut(s)	18, 156
BspDI	ATCGAT	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	1065
BspLI	GGNNCC	1 cut(s)	919
BspMAI	CTGCAG	1 cut(s)	1078
BspPI	GGATC	2 cut(s)	71, 167
BspT104I	TTCGAA	1 cut(s)	667
BspT107I	GGYRCC	1 cut(s)	917
BsrDI	GCAATG	2 cut(s)	99, 250
BsrI	ACTGG	2 cut(s)	708, 861
BssECI	CCNNGG	4 cut(s)	177, 216, 824, 1101
BssMI	GATC	3 cut(s)	76, 172, 880
BssT1I	CCWWGG	2 cut(s)	216, 1101
Bst2UI	CCWGG	3 cut(s)	179, 758, 825
Bst4CI	ACNGT	5 cut(s)	232, 481, 698, 794, 1111
Bst6I	CTCTTC	1 cut(s)	1025
BstBAI	YACGTR	1 cut(s)	836
BstBI	TTCGAA	1 cut(s)	667
BstC8I	GCNNGC	3 cut(s)	121, 184, 517
BstDEI	CTNAG	3 cut(s)	26, 164, 447
BstF5I	GGATG	3 cut(s)	339, 480, 682
BstKTI	GATC	3 cut(s)	79, 175, 883
BstMBI	GATC	3 cut(s)	76, 172, 880
BstNI	CCWGG	3 cut(s)	179, 758, 825
BstNSI	RCATGY	2 cut(s)	186, 320
BstSCI	CCNGG	3 cut(s)	177, 756, 823
BstSFI	CTRYAG	2 cut(s)	555, 1074
BstV1I	GCAGC	3 cut(s)	17, 271, 455
BstV2I	GAAGAC	1 cut(s)	149
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	6 cut(s)	24, 149, 519, 660, 756, 1081
BsuTUI	ATCGAT	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	339, 480, 682
BtsIMutI	CAGTG	1 cut(s)	1023
Cac8I	GCNNGC	3 cut(s)	121, 184, 517
CciI	TCATGA	1 cut(s)	1065
Cfr13I	GGNCC	3 cut(s)	22, 518, 1079
ClaI	ATCGAT	1 cut(s)	75
CviAII	CATG	3 cut(s)	183, 317, 1066
DdeI	CTNAG	3 cut(s)	26, 164, 447
DpnI	GATC	3 cut(s)	78, 174, 882
DpnII	GATC	3 cut(s)	76, 172, 880
DraIII	CACNNNGTG	1 cut(s)	352
DriI	GACNNNNNGTC	2 cut(s)	792, 844
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	1025
Eam1105I	GACNNNNNGTC	2 cut(s)	792, 844
EarI	CTCTTC	1 cut(s)	1025
Ecl136II	GAGCTC	1 cut(s)	194
Eco130I	CCWWGG	2 cut(s)	216, 1101
Eco24I	GRGCYC	1 cut(s)	196
Eco53kI	GAGCTC	1 cut(s)	194
Eco57I	CTGAAG	2 cut(s)	33, 282
Eco88I	CYCGRG	2 cut(s)	371, 520
EcoICRI	GAGCTC	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	1079
EcoRII	CCWGG	3 cut(s)	177, 756, 823
EcoT14I	CCWWGG	2 cut(s)	216, 1101
EcoT38I	GRGCYC	1 cut(s)	196
ErhI	CCWWGG	2 cut(s)	216, 1101
FaeI	CATG	3 cut(s)	186, 320, 1069
FaiI	YATR	6 cut(s)	58, 184, 318, 411, 650, 1067
FatI	CATG	3 cut(s)	182, 316, 1065
Fnu4HI	GCNGC	4 cut(s)	6, 285, 444, 754
FokI	GGATG	3 cut(s)	326, 487, 669
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	4 cut(s)	6, 285, 444, 754
FspBI	CTAG	1 cut(s)	873
GluI	GCNGC	4 cut(s)	6, 285, 444, 754
HaeIII	GGCC	6 cut(s)	24, 149, 519, 660, 756, 1081
HapII	CCGG	1 cut(s)	509
Hin1II	CATG	3 cut(s)	186, 320, 1069
HindIII	AAGCTT	1 cut(s)	672
HinfI	GANTC	2 cut(s)	461, 539
HpaII	CCGG	1 cut(s)	509
Hpy166II	GTNNAC	2 cut(s)	252, 701
Hpy188I	TCNGA	3 cut(s)	198, 262, 850
Hpy188III	TCNNGA	6 cut(s)	139, 373, 543, 578, 776, 1066
Hpy8I	GTNNAC	2 cut(s)	252, 701
Hpy99I	CGWCG	1 cut(s)	798
HpyAV	CCTTC	3 cut(s)	267, 845, 908
HpyCH4III	ACNGT	5 cut(s)	232, 481, 698, 794, 1111
HpyCH4IV	ACGT	5 cut(s)	351, 816, 835, 840, 934
HpyCH4V	TGCA	8 cut(s)	60, 119, 292, 443, 470, 771, 1076, 1086
HpyF3I	CTNAG	3 cut(s)	26, 164, 447
HpySE526I	ACGT	5 cut(s)	351, 816, 835, 840, 934
Hsp92II	CATG	3 cut(s)	186, 320, 1069
Kzo9I	GATC	3 cut(s)	76, 172, 880
LmnI	GCTCC	3 cut(s)	128, 191, 909
Lsp1109I	GCAGC	3 cut(s)	17, 271, 455
LweI	GCATC	3 cut(s)	691, 718, 1024
MaeI	CTAG	1 cut(s)	873
MaeII	ACGT	5 cut(s)	351, 816, 835, 840, 934
MaeIII	GTNAC	1 cut(s)	836
MalI	GATC	3 cut(s)	78, 174, 882
MboI	GATC	3 cut(s)	76, 172, 880
MboII	GAAGA	7 cut(s)	119, 154, 388, 791, 890, 980, 1012
MfeI	CAATTG	1 cut(s)	38
MhlI	GDGCHC	2 cut(s)	196, 527
MluCI	AATT	6 cut(s)	38, 113, 398, 734, 782, 830
MmeI	TCCRAC	2 cut(s)	169, 978
MnlI	CCTC	8 cut(s)	382, 445, 592, 598, 671, 703, 732, 986
MroXI	GAANNNNTTC	1 cut(s)	309
MspI	CCGG	1 cut(s)	509
MspR9I	CCNGG	3 cut(s)	179, 758, 825
MunI	CAATTG	1 cut(s)	38
Mva1269I	GAATGC	1 cut(s)	292
MvaI	CCWGG	3 cut(s)	179, 758, 825
NdeII	GATC	3 cut(s)	76, 172, 880
NlaIII	CATG	3 cut(s)	186, 320, 1069
NlaIV	GGNNCC	1 cut(s)	919
NmuCI	GTSAC	1 cut(s)	836
NspI	RCATGY	2 cut(s)	186, 320
NspV	TTCGAA	1 cut(s)	667
PaeI	GCATGC	1 cut(s)	186
PaeR7I	CTCGAG	1 cut(s)	371
PagI	TCATGA	1 cut(s)	1065
PctI	GAATGC	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	461, 539
PkrI	GCNGC	4 cut(s)	7, 286, 445, 755
Ppu21I	YACGTR	1 cut(s)	836
Psp124BI	GAGCTC	1 cut(s)	196
Psp6I	CCWGG	3 cut(s)	177, 756, 823
PspGI	CCWGG	3 cut(s)	177, 756, 823
PspN4I	GGNNCC	1 cut(s)	919
PspPI	GGNCC	3 cut(s)	22, 518, 1079
PsrI	GAACNNNNNNTAC	2 cut(s)	538, 570
PstI	CTGCAG	1 cut(s)	1078
SacI	GAGCTC	1 cut(s)	196
SatI	GCNGC	4 cut(s)	6, 285, 444, 754
Sau3AI	GATC	3 cut(s)	76, 172, 880
Sau96I	GGNCC	3 cut(s)	22, 518, 1079
ScrFI	CCNGG	3 cut(s)	179, 758, 825
SduI	GDGCHC	2 cut(s)	196, 527
SfaNI	GCATC	3 cut(s)	691, 718, 1024
SfcI	CTRYAG	2 cut(s)	555, 1074
Sfr274I	CTCGAG	1 cut(s)	371
SfuI	TTCGAA	1 cut(s)	667
SlaI	CTCGAG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	371, 576
SmoI	CTYRAG	2 cut(s)	371, 576
SphI	GCATGC	1 cut(s)	186
Sse9I	AATT	6 cut(s)	38, 113, 398, 734, 782, 830
SsiI	CCGC	3 cut(s)	104, 753, 1013
SspMI	CTAG	1 cut(s)	873
SstI	GAGCTC	1 cut(s)	196
StyD4I	CCNGG	3 cut(s)	177, 756, 823
StyI	CCWWGG	2 cut(s)	216, 1101
TaaI	ACNGT	5 cut(s)	232, 481, 698, 794, 1111
TaiI	ACGT	5 cut(s)	354, 819, 838, 843, 937
TaqI	TCGA	3 cut(s)	75, 372, 667
TasI	AATT	6 cut(s)	38, 113, 398, 734, 782, 830
TauI	GCSGC	1 cut(s)	756
TfiI	GAWTC	2 cut(s)	461, 539
TscAI	CASTG	1 cut(s)	1030
TseFI	GTSAC	1 cut(s)	836
TseI	GCWGC	3 cut(s)	5, 284, 443
Tsp45I	GTSAC	1 cut(s)	836
TspDTI	ATGAA	4 cut(s)	126, 225, 285, 1054
TspRI	CASTG	1 cut(s)	1030
XapI	RAATTY	2 cut(s)	113, 398
XceI	RCATGY	2 cut(s)	186, 320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185
XhoI	CTCGAG	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	1 cut(s)	873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.