RchiOBHm_Chr1g0372631

alpha/beta hydrolase fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012379
Physical Location & Seq
Forward (+)
61253633 .. 61256684
3052 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 855 bp
ATGTTGGAAGAGATTACCAAAATGGCTGAGGAGGTGAGTTTGAAGAGTACTACTACTACTACTCCTATTCACTTTGTGCTGGTGCATGGTATCAGTGGAGGGGGTTGGTGCTGGTACAAAATCCGGTGTCTCATGGAGAATTCCGGCTACAAAGTCTCCACAGTTGATCTGAAGAGCGCCGGAATCGATCCCGCAAACGCGGATTCGGTCCTCTCTTTTGACTACTACAACAAACCACTCCTCGACTTCCTCTCTTCTCTCCCCGAACACGAACAGGTAGTTTTGGTGGGGCACAGCGCCGGAGGGTTGAGCGTGACGCTGGCGACGCTGAAGTTTCCGAAGAAGATCCGGCTGGCGGTTTATGTGGCGGCGACGATGCTCAAGCATGGGTTCACTAGTGAGGAAGATGTCAAAGATGGAGTGCCTAATTTATCCGAATTTGGTGACGTGTACGAATTAGGATTTGAATTAGGAGCTGACAAACCACCAACAAGCGGAATTGTGAAGAAAGAAGTCCAGCGCAAAATCATATATCAAATGAGTCCTCAAGAGGATTCGACACTAGCTGCCATGCTTTTGAGACCTGGACCGCTCCTAGCTATAACGACAGCCCAGTTTAAGGAAGAAGACGATGACCATGACATTGATGTGCTTGAGAAAGTGCCACGTGTCTACGTGAAGACTTTGCAAGATCATGTGGTGAAACCAGCGCAGCAAGATTCGATGGTCAAGAGGTGGCCGCCGGCTGAGGTCTATGTATTGGATAGTGATCACAGTCCCTTCTTCTCCCAGCCGTTTCTGCTCTTTGGATTCCTTGTAAAGGCTGCCGAGGCTTCTCACTGGGAGATTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

284

Amino Acids

31.56

Weight (kDa)

5.2

Isoelectric Point (pI)

41.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 24 - 263 1.9e-16 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 25 - 265 3.3e-17 Alpha/beta hydrolase family
Hydrolase_4 PF12146 26 - 245 7.5e-07 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012379)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10870
fragaria_vesca FvH4_7g26180
malus_domestica MD01G1170100.v1.1 MD07G1237000.v1.1 MD11G1052400.v1.1
prunus_persica Prupe.2G266100_v2.0.a1
pyrus_communis pycom01g18280 pycom07g21330
rosa_chinensis RchiOBHm_Chr1g0372631
rosa_laevigata RLG00000026885
rosa_multiflora Rmu_sc0008757.1_g000010 Rmu_ssc0000419.1_g000007
rosa_roxburghii Rroxscaffold_4G00284810
rosa_rugosa Rorug01G0373400
rosa_samantha Rh1AG381900 Rh1BG345300 Rh1CG358700 Rh1DG376500
rosa_wichuraiana Rw1G033590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 592
AccI GTMKAC 1 cut(s) 672
AccII CGCG 1 cut(s) 200
AciI CCGC 7 cut(s) 192, 200, 356, 368, 495, 590, 740
AclWI GGATC 2 cut(s) 182, 340
AcoI YGGCCR 1 cut(s) 737
AcsI RAATTY 2 cut(s) 139, 437
AcuI CTGAAG 2 cut(s) 191, 350
AcvI CACGTG 1 cut(s) 668
AdeI CACNNNGTG 1 cut(s) 76
AfaI GTAC 3 cut(s) 49, 116, 452
AfiI CCNNNNNNNGG 4 cut(s) 355, 494, 619, 820
AflIII ACRYGT 2 cut(s) 447, 667
AgsI TTSAA 2 cut(s) 43, 467
AhlI ACTAGT 1 cut(s) 395
AjiI CACGTC 1 cut(s) 448
AjnI CCWGG 1 cut(s) 583
AluBI AGCT 3 cut(s) 476, 566, 599
AluI AGCT 3 cut(s) 476, 566, 599
Alw26I GTCTC 3 cut(s) 134, 160, 574
AlwI GGATC 2 cut(s) 182, 340
AoxI GGCC 1 cut(s) 737
ApeKI GCWGC 3 cut(s) 566, 712, 824
ApoI RAATTY 2 cut(s) 139, 437
AspLEI GCGC 4 cut(s) 179, 299, 522, 712
AspS9I GGNCC 2 cut(s) 208, 587
AsuHPI GGTGA 3 cut(s) 46, 455, 712
AvaII GGWCC 2 cut(s) 208, 587
BaeGI GKGCMC 1 cut(s) 294
BbrPI CACGTG 1 cut(s) 668
BbsI GAAGAC 2 cut(s) 633, 686
BbvCI CCTCAGC 2 cut(s) 27, 747
BbvI GCAGC 3 cut(s) 553, 724, 811
BccI CCATC 2 cut(s) 410, 718
BceAI ACGGC 1 cut(s) 778
BciT130I CCWGG 1 cut(s) 585
BclI TGATCA 1 cut(s) 769
BcoDI GTCTC 3 cut(s) 134, 160, 574
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 3 cut(s) 396, 563, 596
BfoI RGCGCY 2 cut(s) 180, 300
BisI GCNGC 5 cut(s) 369, 567, 713, 740, 825
BlsI GCNGC 5 cut(s) 370, 568, 714, 741, 826
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 585
Bme18I GGWCC 2 cut(s) 208, 587
BmgBI CACGTC 1 cut(s) 448
BmgT120I GGNCC 2 cut(s) 208, 587
BmrFI CCNGG 1 cut(s) 585
BmrI ACTGGG 2 cut(s) 607, 850
BmsI GCATC 1 cut(s) 366
BmuI ACTGGG 2 cut(s) 607, 850
BpiI GAAGAC 2 cut(s) 633, 686
Bpu10I CCTNAGC 2 cut(s) 27, 747
BpuEI CTTGAG 3 cut(s) 365, 531, 674
Bsa29I ATCGAT 1 cut(s) 186
BsaAI YACGTR 2 cut(s) 668, 676
BsaBI GATNNNNATC 1 cut(s) 768
BsaI GGTCTC 1 cut(s) 574
BsaJI CCNNGG 1 cut(s) 828
BsaWI WCCGGW 1 cut(s) 123
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 140, 170
Bsc4I CCNNNNNNNGG 4 cut(s) 355, 494, 619, 820
Bse118I RCCGGY 1 cut(s) 742
Bse1I ACTGG 2 cut(s) 613, 845
Bse8I GATNNNNATC 1 cut(s) 768
BseBI CCWGG 1 cut(s) 585
BseCI ATCGAT 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 828
BseJI GATNNNNATC 1 cut(s) 768
BseLI CCNNNNNNNGG 4 cut(s) 355, 494, 619, 820
BseMII CTCAG 2 cut(s) 18, 738
BseNI ACTGG 2 cut(s) 613, 845
BseRI GAGGAG 2 cut(s) 44, 230
BseSI GKGCMC 1 cut(s) 294
BseXI GCAGC 3 cut(s) 553, 724, 811
BseYI CCCAGC 1 cut(s) 789
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 1 cut(s) 739
BshVI ATCGAT 1 cut(s) 186
BsiSI CCGG 6 cut(s) 124, 144, 180, 300, 349, 743
BslFI GGGAC 1 cut(s) 762
BslI CCNNNNNNNGG 4 cut(s) 355, 494, 619, 820
BsmAI GTCTC 3 cut(s) 134, 160, 574
BsmFI GGGAC 1 cut(s) 762
BsnI GGCC 1 cut(s) 739
Bso31I GGTCTC 1 cut(s) 574
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 5 cut(s) 166, 187, 345, 691, 769
BspACI CCGC 7 cut(s) 192, 200, 356, 368, 495, 590, 740
BspANI GGCC 1 cut(s) 739
BspCNI CTCAG 2 cut(s) 19, 739
BspDI ATCGAT 1 cut(s) 186
BspFNI CGCG 1 cut(s) 200
BspPI GGATC 2 cut(s) 182, 340
BspQI GCTCTTC 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 574
BsrBI CCGCTC 1 cut(s) 592
BsrFI RCCGGY 1 cut(s) 742
BsrI ACTGG 2 cut(s) 613, 845
BssAI RCCGGY 1 cut(s) 742
BssECI CCNNGG 1 cut(s) 828
BssMI GATC 5 cut(s) 166, 187, 345, 691, 769
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 2 cut(s) 163, 776
Bst6I CTCTTC 4 cut(s) 3, 38, 167, 259
BstBAI YACGTR 2 cut(s) 668, 676
BstC8I GCNNGC 3 cut(s) 321, 354, 744
BstDEI CTNAG 2 cut(s) 27, 747
BstENI CCTNNNNNAGG 1 cut(s) 818
BstFNI CGCG 1 cut(s) 200
BstH2I RGCGCY 2 cut(s) 180, 300
BstHHI GCGC 4 cut(s) 179, 299, 522, 712
BstKTI GATC 5 cut(s) 169, 190, 348, 694, 772
BstMAI GTCTC 3 cut(s) 134, 160, 574
BstMBI GATC 5 cut(s) 166, 187, 345, 691, 769
BstMWI GCNNNNNNNGC 3 cut(s) 325, 799, 830
BstNI CCWGG 1 cut(s) 585
BstSCI CCNGG 1 cut(s) 583
BstSLI GKGCMC 1 cut(s) 294
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 3 cut(s) 553, 724, 811
BstV2I GAAGAC 2 cut(s) 633, 686
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
Bsu15I ATCGAT 1 cut(s) 186
BsuRI GGCC 1 cut(s) 739
BsuTUI ATCGAT 1 cut(s) 186
BtrI CACGTC 1 cut(s) 448
BtsIMutI CAGTG 2 cut(s) 100, 838
Cac8I GCNNGC 3 cut(s) 321, 354, 744
CfoI GCGC 4 cut(s) 179, 299, 522, 712
Cfr10I RCCGGY 1 cut(s) 742
Cfr13I GGNCC 2 cut(s) 208, 587
ClaI ATCGAT 1 cut(s) 186
CseI GACGC 2 cut(s) 325, 334
Csp6I GTAC 3 cut(s) 48, 115, 451
CviAII CATG 6 cut(s) 86, 133, 386, 571, 638, 695
CviQI GTAC 3 cut(s) 48, 115, 451
DdeI CTNAG 2 cut(s) 27, 747
DpnI GATC 5 cut(s) 168, 189, 347, 693, 771
DpnII GATC 5 cut(s) 166, 187, 345, 691, 769
DraIII CACNNNGTG 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 737
Eam1104I CTCTTC 4 cut(s) 3, 38, 167, 259
EarI CTCTTC 4 cut(s) 3, 38, 167, 259
Eco31I GGTCTC 1 cut(s) 574
Eco47I GGWCC 2 cut(s) 208, 587
Eco57I CTGAAG 2 cut(s) 191, 350
Eco72I CACGTG 1 cut(s) 668
EcoNI CCTNNNNNAGG 1 cut(s) 818
EcoRI GAATTC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 583
FaeI CATG 6 cut(s) 89, 136, 389, 574, 641, 698
FaqI GGGAC 1 cut(s) 762
FatI CATG 6 cut(s) 85, 132, 385, 570, 637, 694
FauI CCCGC 1 cut(s) 199
FbaI TGATCA 1 cut(s) 769
FblI GTMKAC 1 cut(s) 672
Fnu4HI GCNGC 5 cut(s) 369, 567, 713, 740, 825
Fsp4HI GCNGC 5 cut(s) 369, 567, 713, 740, 825
FspBI CTAG 3 cut(s) 396, 563, 596
GlaI GCGC 4 cut(s) 178, 298, 521, 711
GluI GCNGC 5 cut(s) 369, 567, 713, 740, 825
GsaI CCCAGC 1 cut(s) 793
HaeII RGCGCY 2 cut(s) 180, 300
HaeIII GGCC 1 cut(s) 739
HapII CCGG 6 cut(s) 124, 144, 180, 300, 349, 743
HgaI GACGC 2 cut(s) 325, 334
HhaI GCGC 4 cut(s) 179, 299, 522, 712
Hin1II CATG 6 cut(s) 89, 136, 389, 574, 641, 698
Hin6I GCGC 4 cut(s) 177, 297, 520, 710
HinP1I GCGC 4 cut(s) 177, 297, 520, 710
HinfI GANTC 6 cut(s) 183, 203, 541, 554, 719, 810
HpaII CCGG 6 cut(s) 124, 144, 180, 300, 349, 743
HphI GGTGA 3 cut(s) 46, 455, 712
Hpy166II GTNNAC 3 cut(s) 393, 451, 673
Hpy188I TCNGA 3 cut(s) 171, 339, 436
Hpy188III TCNNGA 2 cut(s) 548, 730
Hpy8I GTNNAC 3 cut(s) 393, 451, 673
Hpy99I CGWCG 2 cut(s) 328, 376
HpyAV CCTTC 1 cut(s) 790
HpyCH4III ACNGT 2 cut(s) 163, 776
HpyCH4IV ACGT 3 cut(s) 447, 667, 675
HpyCH4V TGCA 2 cut(s) 85, 688
HpyF10VI GCNNNNNNNGC 3 cut(s) 325, 799, 830
HpyF3I CTNAG 2 cut(s) 27, 747
HpySE526I ACGT 3 cut(s) 447, 667, 675
Hsp92II CATG 6 cut(s) 89, 136, 389, 574, 641, 698
HspAI GCGC 4 cut(s) 177, 297, 520, 710
KroI GCCGGC 1 cut(s) 742
KroNI GCCGGC 1 cut(s) 744
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 5 cut(s) 166, 187, 345, 691, 769
LguI GCTCTTC 1 cut(s) 167
LmnI GCTCC 2 cut(s) 473, 597
Lsp1109I GCAGC 3 cut(s) 553, 724, 811
LweI GCATC 1 cut(s) 366
MaeI CTAG 3 cut(s) 396, 563, 596
MaeII ACGT 3 cut(s) 447, 667, 675
MaeIII GTNAC 2 cut(s) 313, 443
MalI GATC 5 cut(s) 168, 189, 347, 693, 771
MbiI CCGCTC 1 cut(s) 592
MboI GATC 5 cut(s) 166, 187, 345, 691, 769
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 6 cut(s) 139, 427, 437, 455, 467, 498
MlyI GAGTC 1 cut(s) 550
MroNI GCCGGC 1 cut(s) 742
MseI TTAA 1 cut(s) 618
MslI CAYNNNNRTG 1 cut(s) 647
MspI CCGG 6 cut(s) 124, 144, 180, 300, 349, 743
MspR9I CCNGG 1 cut(s) 585
MvaI CCWGG 1 cut(s) 585
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 3 cut(s) 325, 799, 830
NaeI GCCGGC 1 cut(s) 744
NdeII GATC 5 cut(s) 166, 187, 345, 691, 769
NgoMIV GCCGGC 1 cut(s) 742
NlaIII CATG 6 cut(s) 89, 136, 389, 574, 641, 698
NmeAIII GCCGAG 1 cut(s) 853
NmuCI GTSAC 2 cut(s) 313, 443
PciSI GCTCTTC 1 cut(s) 167
PdiI GCCGGC 1 cut(s) 744
PfeI GAWTC 5 cut(s) 183, 203, 554, 719, 810
PkrI GCNGC 5 cut(s) 370, 568, 714, 741, 826
PleI GAGTC 1 cut(s) 549
PmaCI CACGTG 1 cut(s) 668
PmlI CACGTG 1 cut(s) 668
PpsI GAGTC 1 cut(s) 549
Ppu21I YACGTR 2 cut(s) 668, 676
Psp6I CCWGG 1 cut(s) 583
PspCI CACGTG 1 cut(s) 668
PspFI CCCAGC 1 cut(s) 789
PspGI CCWGG 1 cut(s) 583
PspPI GGNCC 2 cut(s) 208, 587
PsuI RGATCY 1 cut(s) 345
RsaI GTAC 3 cut(s) 49, 116, 452
RsaNI GTAC 3 cut(s) 48, 115, 451
RseI CAYNNNNRTG 1 cut(s) 647
SapI GCTCTTC 1 cut(s) 167
SaqAI TTAA 1 cut(s) 618
SatI GCNGC 5 cut(s) 369, 567, 713, 740, 825
Sau3AI GATC 5 cut(s) 166, 187, 345, 691, 769
Sau96I GGNCC 2 cut(s) 208, 587
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 1 cut(s) 550
ScrFI CCNGG 1 cut(s) 585
SduI GDGCHC 1 cut(s) 294
SfaNI GCATC 1 cut(s) 366
SinI GGWCC 2 cut(s) 208, 587
SmiMI CAYNNNNRTG 1 cut(s) 647
SmlI CTYRAG 3 cut(s) 380, 546, 653
SmoI CTYRAG 3 cut(s) 380, 546, 653
SpeI ACTAGT 1 cut(s) 395
Sse9I AATT 6 cut(s) 139, 427, 437, 455, 467, 498
SsiI CCGC 7 cut(s) 192, 200, 356, 368, 495, 590, 740
SspMI CTAG 3 cut(s) 396, 563, 596
StyD4I CCNGG 1 cut(s) 583
TaaI ACNGT 2 cut(s) 163, 776
TaiI ACGT 3 cut(s) 450, 670, 678
TaqI TCGA 4 cut(s) 186, 243, 557, 722
TaqII GACCGA 1 cut(s) 196
TasI AATT 6 cut(s) 139, 427, 437, 455, 467, 498
TatI WGTACW 1 cut(s) 47
TauI GCSGC 2 cut(s) 371, 742
TfiI GAWTC 5 cut(s) 183, 203, 554, 719, 810
Tru1I TTAA 1 cut(s) 618
Tru9I TTAA 1 cut(s) 618
TscAI CASTG 2 cut(s) 100, 845
TseFI GTSAC 2 cut(s) 313, 443
TseI GCWGC 3 cut(s) 566, 712, 824
Tsp45I GTSAC 2 cut(s) 313, 443
TspRI CASTG 2 cut(s) 100, 845
VpaK11BI GGWCC 2 cut(s) 208, 587
XagI CCTNNNNNAGG 1 cut(s) 818
XapI RAATTY 2 cut(s) 139, 437
XmiI GTMKAC 1 cut(s) 672
XspI CTAG 3 cut(s) 396, 563, 596
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.