RchiOBHm_Chr1g0375631

Pentatricopeptide repeat-containing protein At5g66520-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011997
Physical Location & Seq
Forward (+)
62989067 .. 62989985
919 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 858 bp
ATGAGAGAGCTGAAACAAATCCACACCCACATCATAAAGTCCCCATTTTTACTCAAACAAGACCAAACCTTTCTCATCACTCGTCTCCTATTCTTCTGCGCTCTATCCGATTCGGGTTCTCAGACCTACGCCACCGCAGTTTTTCGGGTCATAAAGAACCCGACTCTCTACGTCTACAACATCATGATCAGAGCATACGCGTGTAGAAAGACCAGTGCTTTGGATAAACCTGCTTCGTTTTGGTCGTTGGTGTTGTATAAGCAAATGGTTGGTAATGGGATTGGGCCCAATAGCCTCACTTTTCCGTTTCTTGTGAAGGAATGCGCGGCGAGGAGTGACGGCGGCGCTGGTCTGAGCATTCATAGCCAAGTGCTTAAGTACGGGTGTGAAGATGATGTGTTTGTTCGAAACTCGTTGATGAATATGTACTCTGTTTGTAGGTCTTTGAGTTGCGCACGCAGGGTGTTCGATGAAATGCCTGAGAGAGATGTGGTTTCGTGGAACTCGATGATTAAGGGGTGTTTGAGAAGTGGGGAACTTGATGAGGCGATGGATGTATTTGGGAAGATGAAGCAGAGGAGTATTTTTAGTTGGAATTCCATTATAACCGGGTGTGCTGCGGGCGGTGTTAGACCGGATAAGAGTACGATTGCTAGTGTCCTTACGGCTTGTGCTCATCTTGGCGCGGTTGATCACGGGACATGGGTGCATGGGTACCTGAGGAGAAGTGGGCTGGAGAGTGATGTGGTTATTGGAACAGCTCTGGTTGACATGTTTGGAAAATGTGGATGTGTGGAAAAAGCCTACGAGGTCTTTAAGGAAATACCGAAGAGCCAAAGTATCTTTCTTTGGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

285

Amino Acids

31.79

Weight (kDa)

9.01

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 162 - 206 1.1e-10 PPR repeat family
PPR_1 PF12854 162 - 191 1e-06 PPR repeat
PPR PF01535 165 - 194 8.2e-10 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14170 AT4G14170
fragaria_vesca FvH4_7g28451
malus_domestica MD01G1188300.v1.1
prunus_persica Prupe.2G284600_v2.0.a1
pyrus_communis pycom01g20010
rosa_chinensis RchiOBHm_Chr1g0375631 RchiOBHm_Chr1g0375671
rosa_laevigata RLG00000026661
rosa_multiflora Rmu_co8281021.1_g000001 Rmu_co8425983.1_g000001 Rmu_sc0001644.1_g000022
rosa_roxburghii Rroxscaffold_4G00282680
rosa_rugosa Rorug01G0391700
rosa_samantha Rh1AG402600 Rh1BG366800 Rh1CG379500
rosa_wichuraiana Rw1G035750 Rw1G035770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 605
Acc16I TGCGCA 1 cut(s) 454
Acc36I ACCTGC 1 cut(s) 238
Acc65I GGTACC 1 cut(s) 714
AccB1I GGYRCC 1 cut(s) 714
AccI GTMKAC 1 cut(s) 174
AccII CGCG 3 cut(s) 200, 326, 686
AciI CCGC 6 cut(s) 135, 326, 342, 620, 624, 686
AcsI RAATTY 1 cut(s) 595
AfaI GTAC 4 cut(s) 380, 428, 646, 716
AflII CTTAAG 1 cut(s) 374
AflIII ACRYGT 2 cut(s) 198, 771
AjuI GAANNNNNNNTTGG 1 cut(s) 828
AluBI AGCT 2 cut(s) 10, 761
AluI AGCT 2 cut(s) 10, 761
Alw21I GWGCWC 1 cut(s) 676
Alw26I GTCTC 1 cut(s) 89
AoxI GGCC 1 cut(s) 284
ApaI GGGCCC 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 617
ApoI RAATTY 1 cut(s) 595
ArsI GACNNNNNNTTYG 2 cut(s) 202, 234
Asp718I GGTACC 1 cut(s) 714
AspLEI GCGC 6 cut(s) 101, 326, 347, 455, 686, 855
AspS9I GGNCC 2 cut(s) 284, 285
AsuC2I CCSGG 1 cut(s) 610
AsuII TTCGAA 1 cut(s) 406
AxyI CCTNAGG 1 cut(s) 719
BaeGI GKGCMC 1 cut(s) 288
BanI GGYRCC 1 cut(s) 714
BanII GRGCYC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 1 cut(s) 604
BccI CCATC 1 cut(s) 544
BceAI ACGGC 2 cut(s) 355, 681
BcgI CGANNNNNNTGC 2 cut(s) 448, 482
BclI TGATCA 2 cut(s) 186, 691
BcnI CCSGG 1 cut(s) 610
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 1 cut(s) 654
BfoI RGCGCY 2 cut(s) 348, 856
BfrI CTTAAG 1 cut(s) 374
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 3 cut(s) 327, 343, 618
BlsI GCNGC 3 cut(s) 328, 344, 619
Bme1390I CCNGG 1 cut(s) 610
BmgT120I GGNCC 2 cut(s) 284, 285
BmiI GGNNCC 2 cut(s) 286, 716
BmrFI CCNGG 1 cut(s) 610
BpmI CTGGAG 1 cut(s) 755
Bpu14I TTCGAA 1 cut(s) 406
BpuMI CCSGG 1 cut(s) 610
BsaWI WCCGGW 1 cut(s) 634
Bse1I ACTGG 1 cut(s) 213
Bse21I CCTNAGG 1 cut(s) 719
BseGI GGATG 2 cut(s) 559, 794
BseMII CTCAG 4 cut(s) 134, 344, 471, 710
BseNI ACTGG 1 cut(s) 213
BseRI GAGGAG 3 cut(s) 346, 592, 736
BseSI GKGCMC 1 cut(s) 288
BseXI GCAGC 1 cut(s) 604
Bsh1236I CGCG 3 cut(s) 200, 326, 686
BshFI GGCC 1 cut(s) 286
BshNI GGYRCC 1 cut(s) 714
BsiHKAI GWGCWC 1 cut(s) 676
BsiSI CCGG 2 cut(s) 609, 635
BslFI GGGAC 2 cut(s) 25, 712
BsmAI GTCTC 1 cut(s) 89
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 2 cut(s) 25, 712
BsmI GAATGC 2 cut(s) 326, 357
BsnI GGCC 1 cut(s) 286
Bsp119I TTCGAA 1 cut(s) 406
Bsp120I GGGCCC 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 288, 676
Bsp143I GATC 2 cut(s) 186, 691
BspACI CCGC 6 cut(s) 135, 326, 342, 620, 624, 686
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 4 cut(s) 133, 345, 472, 711
BspFNI CGCG 3 cut(s) 200, 326, 686
BspHI TCATGA 1 cut(s) 183
BspLI GGNNCC 2 cut(s) 286, 716
BspMI ACCTGC 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 824
BspT104I TTCGAA 1 cut(s) 406
BspT107I GGYRCC 1 cut(s) 714
BspTI CTTAAG 1 cut(s) 374
BsrI ACTGG 1 cut(s) 213
BssMI GATC 2 cut(s) 186, 691
Bst6I CTCTTC 1 cut(s) 824
BstAFI CTTAAG 1 cut(s) 374
BstBI TTCGAA 1 cut(s) 406
BstC8I GCNNGC 2 cut(s) 457, 622
BstDEI CTNAG 4 cut(s) 120, 353, 480, 719
BstF5I GGATG 2 cut(s) 559, 794
BstFNI CGCG 3 cut(s) 200, 326, 686
BstH2I RGCGCY 2 cut(s) 348, 856
BstHHI GCGC 6 cut(s) 101, 326, 347, 455, 686, 855
BstKTI GATC 2 cut(s) 189, 694
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 2 cut(s) 186, 691
BstMWI GCNNNNNNNGC 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 775
BstSCI CCNGG 1 cut(s) 608
BstSLI GKGCMC 1 cut(s) 288
BstUI CGCG 3 cut(s) 200, 326, 686
BstV1I GCAGC 1 cut(s) 604
BstXI CCANNNNNNTGG 1 cut(s) 220
Bsu36I CCTNAGG 1 cut(s) 719
BsuRI GGCC 1 cut(s) 286
BtgZI GCGATG 1 cut(s) 563
BtsCI GGATG 2 cut(s) 559, 794
BtsIMutI CAGTG 1 cut(s) 220
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 2 cut(s) 457, 622
CciI TCATGA 1 cut(s) 183
CfoI GCGC 6 cut(s) 101, 326, 347, 455, 686, 855
Cfr13I GGNCC 2 cut(s) 284, 285
Csp6I GTAC 4 cut(s) 379, 427, 645, 715
CviAII CATG 4 cut(s) 184, 702, 710, 772
CviJI RGCY 9 cut(s) 10, 286, 294, 366, 668, 733, 761, 803, 834
CviKI_1 RGCY 9 cut(s) 10, 286, 294, 366, 668, 733, 761, 803, 834
CviQI GTAC 4 cut(s) 379, 427, 645, 715
DdeI CTNAG 4 cut(s) 120, 353, 480, 719
DpnI GATC 2 cut(s) 188, 693
DpnII GATC 2 cut(s) 186, 691
Eam1104I CTCTTC 1 cut(s) 824
EarI CTCTTC 1 cut(s) 824
Eco24I GRGCYC 1 cut(s) 288
Eco81I CCTNAGG 1 cut(s) 719
EcoRI GAATTC 1 cut(s) 595
EcoT38I GRGCYC 1 cut(s) 288
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 4 cut(s) 187, 705, 713, 775
FaqI GGGAC 2 cut(s) 25, 712
FatI CATG 4 cut(s) 183, 701, 709, 771
FauI CCCGC 1 cut(s) 613
FbaI TGATCA 2 cut(s) 186, 691
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 327, 343, 618
FokI GGATG 2 cut(s) 566, 801
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 3 cut(s) 327, 343, 618
FspBI CTAG 1 cut(s) 654
FspI TGCGCA 1 cut(s) 454
GlaI GCGC 6 cut(s) 100, 325, 346, 454, 685, 854
GluI GCNGC 3 cut(s) 327, 343, 618
GsuI CTGGAG 1 cut(s) 755
HaeII RGCGCY 2 cut(s) 348, 856
HaeIII GGCC 1 cut(s) 286
HapII CCGG 2 cut(s) 609, 635
HhaI GCGC 6 cut(s) 101, 326, 347, 455, 686, 855
Hin1II CATG 4 cut(s) 187, 705, 713, 775
Hin6I GCGC 6 cut(s) 99, 324, 345, 453, 684, 853
HinP1I GCGC 6 cut(s) 99, 324, 345, 453, 684, 853
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HinfI GANTC 2 cut(s) 110, 163
HpaII CCGG 2 cut(s) 609, 635
Hpy166II GTNNAC 2 cut(s) 175, 769
Hpy188I TCNGA 4 cut(s) 109, 123, 191, 354
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 2 cut(s) 175, 769
HpyAV CCTTC 1 cut(s) 310
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 709
HpyF10VI GCNNNNNNNGC 1 cut(s) 363
HpyF3I CTNAG 4 cut(s) 120, 353, 480, 719
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 4 cut(s) 187, 705, 713, 775
HspAI GCGC 6 cut(s) 99, 324, 345, 453, 684, 853
KpnI GGTACC 1 cut(s) 718
Ksp22I TGATCA 2 cut(s) 186, 691
Kzo9I GATC 2 cut(s) 186, 691
LguI GCTCTTC 1 cut(s) 824
Lsp1109I GCAGC 1 cut(s) 604
MaeI CTAG 1 cut(s) 654
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 335
MalI GATC 2 cut(s) 188, 693
MboI GATC 2 cut(s) 186, 691
MboII GAAGA 4 cut(s) 85, 401, 577, 841
MhlI GDGCHC 2 cut(s) 288, 676
MluCI AATT 1 cut(s) 595
MluI ACGCGT 1 cut(s) 198
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 572
MnlI CCTC 6 cut(s) 305, 324, 538, 570, 714, 802
MseI TTAA 3 cut(s) 375, 513, 816
MslI CAYNNNNRTG 1 cut(s) 199
MspCI CTTAAG 1 cut(s) 374
MspI CCGG 2 cut(s) 609, 635
MspR9I CCNGG 1 cut(s) 610
Mva1269I GAATGC 2 cut(s) 326, 357
MvnI CGCG 3 cut(s) 200, 326, 686
MwoI GCNNNNNNNGC 1 cut(s) 363
NciI CCSGG 1 cut(s) 610
NdeII GATC 2 cut(s) 186, 691
NlaIII CATG 4 cut(s) 187, 705, 713, 775
NlaIV GGNNCC 2 cut(s) 286, 716
NmuCI GTSAC 1 cut(s) 335
NsbI TGCGCA 1 cut(s) 454
NspI RCATGY 1 cut(s) 775
NspV TTCGAA 1 cut(s) 406
PagI TCATGA 1 cut(s) 183
PciI ACATGT 1 cut(s) 771
PciSI GCTCTTC 1 cut(s) 824
PcsI WCGNNNNNNNCGW 2 cut(s) 242, 503
PctI GAATGC 2 cut(s) 326, 357
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 3 cut(s) 328, 344, 619
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PscI ACATGT 1 cut(s) 771
PsiI TTATAA 1 cut(s) 605
PspN4I GGNNCC 2 cut(s) 286, 716
PspOMI GGGCCC 1 cut(s) 284
PspPI GGNCC 2 cut(s) 284, 285
RsaI GTAC 4 cut(s) 380, 428, 646, 716
RsaNI GTAC 4 cut(s) 379, 427, 645, 715
RseI CAYNNNNRTG 1 cut(s) 199
SapI GCTCTTC 1 cut(s) 824
SaqAI TTAA 3 cut(s) 375, 513, 816
SatI GCNGC 3 cut(s) 327, 343, 618
Sau3AI GATC 2 cut(s) 186, 691
Sau96I GGNCC 2 cut(s) 284, 285
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 610
SduI GDGCHC 2 cut(s) 288, 676
SetI ASST 9 cut(s) 12, 71, 128, 174, 232, 443, 720, 763, 813
SfuI TTCGAA 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 1 cut(s) 595
SsiI CCGC 6 cut(s) 135, 326, 342, 620, 624, 686
SspMI CTAG 1 cut(s) 654
StyD4I CCNGG 1 cut(s) 608
TaiI ACGT 1 cut(s) 174
TaqI TCGA 3 cut(s) 406, 468, 506
TasI AATT 1 cut(s) 595
TatI WGTACW 1 cut(s) 426
TauI GCSGC 2 cut(s) 329, 345
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 3 cut(s) 375, 513, 816
Tru9I TTAA 3 cut(s) 375, 513, 816
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 1 cut(s) 617
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 4 cut(s) 350, 434, 486, 584
TspGWI ACGGA 1 cut(s) 294
TspRI CASTG 1 cut(s) 220
Vha464I CTTAAG 1 cut(s) 374
XapI RAATTY 1 cut(s) 595
XceI RCATGY 1 cut(s) 775
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.