Rmu_co8281021.1_g000001

Pentatricopeptide repeat-containing protein At5g66520-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8281021.1
OG0011997
Physical Location & Seq
Reverse (-)
150 .. 636
487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8281021.1_g000001.1.cds

Sequence Viewer

Length: 384 bp
atgtactttgtttgtgggtctttgagttgcgcacgcagggtgttcgatgaaatgcctgagagagatgtggtttcgtggaactcgatgattaagggggtggtcggccgaatgaggcatttggaactttttcatgaaatgcaggctgcgggtggtgttagaccggataagattacgattgctagtgtccttacggcttgtgctcatcttggcgcggttgatcacgggacatgggtgcatgggtacctgaggagaagtgggctggagagtgttgtggttattggaacagctctggtttacatgtttggaaaatgtggatgtgtggaaaaagcctacgaggtctttaaggaaataccgaagagccaaagtatctttctttggcgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

127

Amino Acids

14.23

Weight (kDa)

8.67

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14170 AT4G14170
fragaria_vesca FvH4_7g28451
malus_domestica MD01G1188300.v1.1
prunus_persica Prupe.2G284600_v2.0.a1
pyrus_communis pycom01g20010
rosa_chinensis RchiOBHm_Chr1g0375631 RchiOBHm_Chr1g0375671
rosa_laevigata RLG00000026661
rosa_multiflora Rmu_co8281021.1_g000001 Rmu_co8425983.1_g000001 Rmu_sc0001644.1_g000022
rosa_roxburghii Rroxscaffold_4G00282680
rosa_rugosa Rorug01G0391700
rosa_samantha Rh1AG402600 Rh1BG366800 Rh1CG379500
rosa_wichuraiana Rw1G035750 Rw1G035770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 31
Acc65I GGTACC 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 240
AccII CGCG 1 cut(s) 212
AciI CCGC 2 cut(s) 146, 212
AcoI YGGCCR 1 cut(s) 103
AfaI GTAC 2 cut(s) 5, 242
AflIII ACRYGT 1 cut(s) 297
AjuI GAANNNNNNNTTGG 1 cut(s) 354
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
Alw21I GWGCWC 1 cut(s) 202
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 126
Asp718I GGTACC 1 cut(s) 240
AspLEI GCGC 3 cut(s) 32, 212, 381
AxyI CCTNAGG 1 cut(s) 245
BanI GGYRCC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 1 cut(s) 130
BceAI ACGGC 1 cut(s) 207
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BclI TGATCA 1 cut(s) 217
BfaI CTAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 382
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 242
BpmI CTGGAG 1 cut(s) 281
BsaWI WCCGGW 1 cut(s) 160
Bse21I CCTNAGG 1 cut(s) 245
BseGI GGATG 1 cut(s) 320
BseMII CTCAG 2 cut(s) 48, 236
BseRI GAGGAG 1 cut(s) 262
BseX3I CGGCCG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 212
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 1 cut(s) 105
BshNI GGYRCC 1 cut(s) 240
BsiEI CGRYCG 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 2 cut(s) 146, 212
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 2 cut(s) 49, 237
BspFNI CGCG 1 cut(s) 212
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 242
BspQI GCTCTTC 1 cut(s) 350
BspT107I GGYRCC 1 cut(s) 240
BssMI GATC 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 34, 141
BstDEI CTNAG 2 cut(s) 57, 245
BstF5I GGATG 1 cut(s) 320
BstFNI CGCG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 382
BstHHI GCGC 3 cut(s) 32, 212, 381
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMCI CGRYCG 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 301
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 130
BstZI CGGCCG 1 cut(s) 103
Bsu36I CCTNAGG 1 cut(s) 245
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 320
Cac8I GCNNGC 2 cut(s) 34, 141
CciI TCATGA 1 cut(s) 130
CfoI GCGC 3 cut(s) 32, 212, 381
Csp6I GTAC 2 cut(s) 4, 241
CviAII CATG 4 cut(s) 131, 228, 236, 298
CviJI RGCY 7 cut(s) 105, 143, 194, 259, 287, 329, 360
CviKI_1 RGCY 7 cut(s) 105, 143, 194, 259, 287, 329, 360
CviQI GTAC 2 cut(s) 4, 241
DdeI CTNAG 2 cut(s) 57, 245
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 103
EagI CGGCCG 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
EclXI CGGCCG 1 cut(s) 103
Eco52I CGGCCG 1 cut(s) 103
Eco81I CCTNAGG 1 cut(s) 245
FaeI CATG 4 cut(s) 134, 231, 239, 301
FaiI YATR 4 cut(s) 132, 229, 237, 299
FaqI GGGAC 1 cut(s) 238
FatI CATG 4 cut(s) 130, 227, 235, 297
FauI CCCGC 1 cut(s) 139
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 1 cut(s) 327
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 1 cut(s) 180
FspI TGCGCA 1 cut(s) 31
GlaI GCGC 3 cut(s) 31, 211, 380
GluI GCNGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 281
HaeII RGCGCY 1 cut(s) 382
HaeIII GGCC 1 cut(s) 105
HapII CCGG 1 cut(s) 161
HhaI GCGC 3 cut(s) 32, 212, 381
Hin1II CATG 4 cut(s) 134, 231, 239, 301
Hin6I GCGC 3 cut(s) 30, 210, 379
HinP1I GCGC 3 cut(s) 30, 210, 379
HpaII CCGG 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 295
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 295
HpyCH4V TGCA 2 cut(s) 139, 235
HpyF3I CTNAG 2 cut(s) 57, 245
Hsp92II CATG 4 cut(s) 134, 231, 239, 301
HspAI GCGC 3 cut(s) 30, 210, 379
KpnI GGTACC 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 1 cut(s) 217
LguI GCTCTTC 1 cut(s) 350
LpnPI CCDG 7 cut(s) 22, 69, 125, 174, 245, 257, 275
Lsp1109I GCAGC 1 cut(s) 130
MaeI CTAG 1 cut(s) 180
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 202
MnlI CCTC 3 cut(s) 105, 240, 328
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 2 cut(s) 90, 342
MspI CCGG 1 cut(s) 161
MvnI CGCG 1 cut(s) 212
NdeII GATC 1 cut(s) 217
NlaIII CATG 4 cut(s) 134, 231, 239, 301
NlaIV GGNNCC 1 cut(s) 242
NsbI TGCGCA 1 cut(s) 31
NspI RCATGY 1 cut(s) 301
PagI TCATGA 1 cut(s) 130
PciI ACATGT 1 cut(s) 297
PciSI GCTCTTC 1 cut(s) 350
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 126
PkrI GCNGC 1 cut(s) 145
PscI ACATGT 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 242
RsaI GTAC 2 cut(s) 5, 242
RsaNI GTAC 2 cut(s) 4, 241
SapI GCTCTTC 1 cut(s) 350
SaqAI TTAA 2 cut(s) 90, 342
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 1 cut(s) 217
SduI GDGCHC 1 cut(s) 202
SetI ASST 3 cut(s) 246, 289, 339
SsiI CCGC 2 cut(s) 146, 212
SspMI CTAG 1 cut(s) 180
TaqI TCGA 2 cut(s) 45, 83
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 2 cut(s) 90, 342
Tru9I TTAA 2 cut(s) 90, 342
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 3 cut(s) 63, 119, 147
XceI RCATGY 1 cut(s) 301
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.