Rmu_co8425983.1_g000001

Pentatricopeptide repeat-containing protein At5g66520-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8425983.1
OG0011997
Physical Location & Seq
Reverse (-)
434 .. 1411
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8425983.1_g000001.1.cds

Sequence Viewer

Length: 978 bp
atgggtgtgtttgggaagatgaagcagaggagtatttttagttggaattccattataactgggtgtgttcaaggcggtcggccgaaggaggcattggaactttttcatgaaatgcaggttaggggcggtgttagaccggataagattacgattgctagtgtccttgcagcttgtgctcatcttggcgcggttgatcacgggacatgggtgcatgggtacctgaggagaagtgggctagagagtgatgtggttattggaacagctctggttgacatgtatggtaaatgtggatgtgtggaaaaagcttatgaggtctttaaggaaatgccgaagaaagatactttggcatggacagctatgatttcggtttttgctctccatgggtttggcaatgaggcttttgatctttttgaaaagatggaagcaactggggttgagccgaatcatgtgacatttgttgggttgttgtcagcttgtgctcattccggtttagtagagaaaggtcgctggtgttttgatgtgatgagacgtgtttacttaattgaacctcagctttatcattatgcatgcatggttgatatacttagcagagctgggctaattgaagaggcggagaggttgataagaagcatgccaatgaagccagatgtatttgtttggggtgcattacttggaggttgtcaaatacatggaaaggttgagataggagaactggtggcccgtcatttaattgatatggaacctctgaaccatgctttttatgtcaacttgtgcgatatatatgccaaagctggtagatttaatgatgtgaaaacaattaaatcactaatgaaagaaagagggatcaaaaaggaagttgcaggctgtagcctgattgaagtcgatggagttgttcttgaattctcagtcagaggatcccctgatgttgtaatggatgaagtattatgcgtcttgagtcagttgaatagtgaggcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

325

Amino Acids

35.96

Weight (kDa)

6.14

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14170 AT4G14170
fragaria_vesca FvH4_7g28451
malus_domestica MD01G1188300.v1.1
prunus_persica Prupe.2G284600_v2.0.a1
pyrus_communis pycom01g20010
rosa_chinensis RchiOBHm_Chr1g0375631 RchiOBHm_Chr1g0375671
rosa_laevigata RLG00000026661
rosa_multiflora Rmu_co8281021.1_g000001 Rmu_co8425983.1_g000001 Rmu_sc0001644.1_g000022
rosa_roxburghii Rroxscaffold_4G00282680
rosa_rugosa Rorug01G0391700
rosa_samantha Rh1AG402600 Rh1BG366800 Rh1CG379500
rosa_wichuraiana Rw1G035750 Rw1G035770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 56
Acc36I ACCTGC 1 cut(s) 106
Acc65I GGTACC 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 216
AccII CGCG 1 cut(s) 188
AciI CCGC 4 cut(s) 75, 126, 188, 611
AclWI GGATC 3 cut(s) 851, 909, 922
AcoI YGGCCR 1 cut(s) 80
AcsI RAATTY 2 cut(s) 46, 899
AfaI GTAC 1 cut(s) 218
AflIII ACRYGT 2 cut(s) 273, 529
AgsI TTSAA 7 cut(s) 71, 413, 545, 605, 878, 899, 964
AjiI CACGTC 1 cut(s) 530
AjuI GAANNNNNNNTTGG 4 cut(s) 77, 109, 326, 358
AluBI AGCT 8 cut(s) 170, 263, 305, 356, 473, 553, 593, 791
AluI AGCT 8 cut(s) 170, 263, 305, 356, 473, 553, 593, 791
Alw21I GWGCWC 2 cut(s) 178, 481
Alw26I GTCTC 1 cut(s) 520
AlwI GGATC 3 cut(s) 851, 909, 922
AoxI GGCC 3 cut(s) 80, 717, 972
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 2 cut(s) 46, 899
Asp700I GAANNNNTTC 1 cut(s) 102
Asp718I GGTACC 1 cut(s) 216
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 718
AxyI CCTNAGG 1 cut(s) 221
BamHI GGATCC 1 cut(s) 914
BanI GGYRCC 1 cut(s) 216
Bbv12I GWGCWC 2 cut(s) 178, 481
BbvCI CCTCAGC 1 cut(s) 549
BbvI GCAGC 1 cut(s) 179
BccI CCATC 2 cut(s) 412, 878
BcgI CGANNNNNNTGC 2 cut(s) 764, 798
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 520
BfaI CTAG 3 cut(s) 156, 236, 976
BfmI CTRYAG 1 cut(s) 865
BfuAI ACCTGC 1 cut(s) 106
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
BmgBI CACGTC 1 cut(s) 530
BmgT120I GGNCC 1 cut(s) 718
BmiI GGNNCC 3 cut(s) 218, 741, 916
BmrI ACTGGG 2 cut(s) 69, 438
BmuI ACTGGG 2 cut(s) 69, 438
Bpu10I CCTNAGC 1 cut(s) 549
BpuEI CTTGAG 1 cut(s) 973
BsaJI CCNNGG 1 cut(s) 379
BsaWI WCCGGW 2 cut(s) 136, 485
BsaXI ACNNNNNCTCC 2 cut(s) 699, 729
Bse1I ACTGG 3 cut(s) 64, 433, 717
Bse21I CCTNAGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 397
BseDI CCNNGG 1 cut(s) 379
BseGI GGATG 2 cut(s) 296, 940
BseMI GCAATG 1 cut(s) 397
BseMII CTCAG 3 cut(s) 212, 563, 918
BseNI ACTGG 3 cut(s) 64, 433, 717
BseRI GAGGAG 2 cut(s) 43, 238
BseX3I CGGCCG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 179
BseYI CCCAGC 1 cut(s) 593
Bsh1236I CGCG 1 cut(s) 188
Bsh1285I CGRYCG 2 cut(s) 79, 83
BshFI GGCC 3 cut(s) 82, 719, 974
BshNI GGYRCC 1 cut(s) 216
BsiEI CGRYCG 2 cut(s) 79, 83
BsiHKAI GWGCWC 2 cut(s) 178, 481
BsiSI CCGG 2 cut(s) 137, 486
BslFI GGGAC 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 520
BsmBI CGTCTC 1 cut(s) 520
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 3 cut(s) 82, 719, 974
Bsp1286I GDGCHC 2 cut(s) 178, 481
Bsp143I GATC 4 cut(s) 193, 403, 843, 914
Bsp19I CCATGG 1 cut(s) 379
BspACI CCGC 4 cut(s) 75, 126, 188, 611
BspANI GGCC 3 cut(s) 82, 719, 974
BspCNI CTCAG 3 cut(s) 213, 562, 917
BspFNI CGCG 1 cut(s) 188
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 3 cut(s) 218, 741, 916
BspMI ACCTGC 1 cut(s) 106
BspPI GGATC 3 cut(s) 851, 909, 922
BspT107I GGYRCC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 397
BsrI ACTGG 3 cut(s) 64, 433, 717
BssECI CCNNGG 1 cut(s) 379
BssMI GATC 4 cut(s) 193, 403, 843, 914
BssT1I CCWWGG 1 cut(s) 379
Bst6I CTCTTC 1 cut(s) 600
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 3 cut(s) 568, 632, 862
BstDEI CTNAG 4 cut(s) 221, 549, 584, 904
BstDSI CCRYGG 1 cut(s) 379
BstF5I GGATG 2 cut(s) 296, 940
BstFNI CGCG 1 cut(s) 188
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 4 cut(s) 196, 406, 846, 917
BstMAI GTCTC 1 cut(s) 520
BstMBI GATC 4 cut(s) 193, 403, 843, 914
BstMCI CGRYCG 2 cut(s) 79, 83
BstMWI GCNNNNNNNGC 3 cut(s) 173, 353, 640
BstNSI RCATGY 3 cut(s) 277, 570, 634
BstSFI CTRYAG 1 cut(s) 865
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 914
BstXI CCANNNNNNTGG 1 cut(s) 386
BstYI RGATCY 1 cut(s) 914
BstZI CGGCCG 1 cut(s) 80
Bsu36I CCTNAGG 1 cut(s) 221
BsuRI GGCC 3 cut(s) 82, 719, 974
BtgI CCRYGG 1 cut(s) 379
BtrI CACGTC 1 cut(s) 530
BtsCI GGATG 2 cut(s) 296, 940
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 3 cut(s) 568, 632, 862
CciI TCATGA 1 cut(s) 106
CfoI GCGC 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 718
CseI GACGC 1 cut(s) 937
Csp6I GTAC 1 cut(s) 217
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 4 cut(s) 221, 549, 584, 904
DpnI GATC 4 cut(s) 195, 405, 845, 916
DpnII GATC 4 cut(s) 193, 403, 843, 914
EaeI YGGCCR 1 cut(s) 80
EagI CGGCCG 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
EciI GGCGGA 1 cut(s) 626
EclXI CGGCCG 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 379
Eco147I AGGCCT 1 cut(s) 974
Eco52I CGGCCG 1 cut(s) 80
Eco81I CCTNAGG 1 cut(s) 221
EcoRI GAATTC 2 cut(s) 46, 899
EcoT14I CCWWGG 1 cut(s) 379
EcoT22I ATGCAT 2 cut(s) 568, 572
ErhI CCWWGG 1 cut(s) 379
Esp3I CGTCTC 1 cut(s) 520
FaqI GGGAC 1 cut(s) 214
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 2 cut(s) 303, 947
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 3 cut(s) 156, 236, 976
GlaI GCGC 1 cut(s) 187
GluI GCNGC 1 cut(s) 168
GsaI CCCAGC 1 cut(s) 597
HaeIII GGCC 3 cut(s) 82, 719, 974
HapII CCGG 2 cut(s) 137, 486
HgaI GACGC 1 cut(s) 937
HhaI GCGC 1 cut(s) 188
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HincII GTYRAC 2 cut(s) 271, 766
HindII GTYRAC 2 cut(s) 271, 766
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 2 cut(s) 442, 955
HpaII CCGG 2 cut(s) 137, 486
Hpy166II GTNNAC 3 cut(s) 271, 535, 766
Hpy188I TCNGA 2 cut(s) 747, 911
Hpy188III TCNNGA 3 cut(s) 107, 896, 952
Hpy8I GTNNAC 3 cut(s) 271, 535, 766
HpyAV CCTTC 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 529
HpyCH4V TGCA 7 cut(s) 115, 167, 211, 566, 570, 665, 860
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 353, 640
HpyF3I CTNAG 4 cut(s) 221, 549, 584, 904
HpySE526I ACGT 1 cut(s) 529
HspAI GCGC 1 cut(s) 186
KpnI GGTACC 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 4 cut(s) 193, 403, 843, 914
Lsp1109I GCAGC 1 cut(s) 179
MaeI CTAG 3 cut(s) 156, 236, 976
MaeII ACGT 1 cut(s) 529
MaeIII GTNAC 1 cut(s) 448
MalI GATC 4 cut(s) 195, 405, 845, 916
MboI GATC 4 cut(s) 193, 403, 843, 914
MboII GAAGA 3 cut(s) 28, 343, 617
MflI RGATCY 1 cut(s) 914
MhlI GDGCHC 2 cut(s) 178, 481
MluCI AATT 6 cut(s) 46, 540, 600, 729, 816, 899
MlyI GAGTC 1 cut(s) 964
MmeI TCCRAC 1 cut(s) 23
Mph1103I ATGCAT 2 cut(s) 568, 572
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 5 cut(s) 318, 539, 728, 801, 819
MslI CAYNNNNRTG 1 cut(s) 635
MspI CCGG 2 cut(s) 137, 486
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 3 cut(s) 173, 353, 640
NcoI CCATGG 1 cut(s) 379
NdeII GATC 4 cut(s) 193, 403, 843, 914
NlaIV GGNNCC 3 cut(s) 218, 741, 916
NmuCI GTSAC 1 cut(s) 448
NsiI ATGCAT 2 cut(s) 568, 572
NspI RCATGY 3 cut(s) 277, 570, 634
PaeI GCATGC 2 cut(s) 570, 634
PagI TCATGA 1 cut(s) 106
PceI AGGCCT 1 cut(s) 974
PciI ACATGT 1 cut(s) 273
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 442
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 963
PpsI GAGTC 1 cut(s) 963
PscI ACATGT 1 cut(s) 273
PsiI TTATAA 1 cut(s) 56
PspFI CCCAGC 1 cut(s) 593
PspN4I GGNNCC 3 cut(s) 218, 741, 916
PspPI GGNCC 1 cut(s) 718
PsuI RGATCY 1 cut(s) 914
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 635
SaqAI TTAA 5 cut(s) 318, 539, 728, 801, 819
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 4 cut(s) 193, 403, 843, 914
Sau96I GGNCC 1 cut(s) 718
SchI GAGTC 1 cut(s) 964
SduI GDGCHC 2 cut(s) 178, 481
SfcI CTRYAG 1 cut(s) 865
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 1 cut(s) 952
SmoI CTYRAG 1 cut(s) 952
SphI GCATGC 2 cut(s) 570, 634
Sse9I AATT 6 cut(s) 46, 540, 600, 729, 816, 899
SseBI AGGCCT 1 cut(s) 974
SsiI CCGC 4 cut(s) 75, 126, 188, 611
SspMI CTAG 3 cut(s) 156, 236, 976
StuI AGGCCT 1 cut(s) 974
StyI CCWWGG 1 cut(s) 379
TaiI ACGT 1 cut(s) 532
TaqI TCGA 1 cut(s) 882
TasI AATT 6 cut(s) 46, 540, 600, 729, 816, 899
TfiI GAWTC 1 cut(s) 442
Tru1I TTAA 5 cut(s) 318, 539, 728, 801, 819
Tru9I TTAA 5 cut(s) 318, 539, 728, 801, 819
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 6 cut(s) 35, 95, 123, 653, 845, 951
XapI RAATTY 2 cut(s) 46, 899
XceI RCATGY 3 cut(s) 277, 570, 634
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 3 cut(s) 156, 236, 976
Zsp2I ATGCAT 2 cut(s) 568, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.