RchiOBHm_Chr1g0375631

Pentatricopeptide repeat-containing protein At5g66520-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011997
Physical Location & Seq
Forward (+)
62989067 .. 62989985
919 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59933

Sequence Viewer

Length: 858 bp
ATGAGAGAGCTGAAACAAATCCACACCCACATCATAAAGTCCCCATTTTTACTCAAACAAGACCAAACCTTTCTCATCACTCGTCTCCTATTCTTCTGCGCTCTATCCGATTCGGGTTCTCAGACCTACGCCACCGCAGTTTTTCGGGTCATAAAGAACCCGACTCTCTACGTCTACAACATCATGATCAGAGCATACGCGTGTAGAAAGACCAGTGCTTTGGATAAACCTGCTTCGTTTTGGTCGTTGGTGTTGTATAAGCAAATGGTTGGTAATGGGATTGGGCCCAATAGCCTCACTTTTCCGTTTCTTGTGAAGGAATGCGCGGCGAGGAGTGACGGCGGCGCTGGTCTGAGCATTCATAGCCAAGTGCTTAAGTACGGGTGTGAAGATGATGTGTTTGTTCGAAACTCGTTGATGAATATGTACTCTGTTTGTAGGTCTTTGAGTTGCGCACGCAGGGTGTTCGATGAAATGCCTGAGAGAGATGTGGTTTCGTGGAACTCGATGATTAAGGGGTGTTTGAGAAGTGGGGAACTTGATGAGGCGATGGATGTATTTGGGAAGATGAAGCAGAGGAGTATTTTTAGTTGGAATTCCATTATAACCGGGTGTGCTGCGGGCGGTGTTAGACCGGATAAGAGTACGATTGCTAGTGTCCTTACGGCTTGTGCTCATCTTGGCGCGGTTGATCACGGGACATGGGTGCATGGGTACCTGAGGAGAAGTGGGCTGGAGAGTGATGTGGTTATTGGAACAGCTCTGGTTGACATGTTTGGAAAATGTGGATGTGTGGAAAAAGCCTACGAGGTCTTTAAGGAAATACCGAAGAGCCAAAGTATCTTTCTTTGGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

285

Amino Acids

31.79

Weight (kDa)

9.01

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 162 - 206 1.1e-10 PPR repeat family
PPR_1 PF12854 162 - 191 1e-06 PPR repeat
PPR PF01535 165 - 194 8.2e-10 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14170 AT4G14170
fragaria_vesca FvH4_7g28451
malus_domestica MD01G1188300.v1.1
prunus_persica Prupe.2G284600_v2.0.a1
pyrus_communis pycom01g20010
rosa_chinensis RchiOBHm_Chr1g0375631 RchiOBHm_Chr1g0375671
rosa_laevigata RLG00000026661
rosa_multiflora Rmu_co8281021.1_g000001 Rmu_co8425983.1_g000001 Rmu_sc0001644.1_g000022
rosa_roxburghii Rroxscaffold_4G00282680
rosa_rugosa Rorug01G0391700
rosa_samantha Rh1AG402600 Rh1BG366800 Rh1CG379500
rosa_wichuraiana Rw1G035750 Rw1G035770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 605
Acc16I TGCGCA 1 cut(s) 454
Acc36I ACCTGC 1 cut(s) 238
Acc65I GGTACC 1 cut(s) 714
AccB1I GGYRCC 1 cut(s) 714
AccI GTMKAC 1 cut(s) 174
AccII CGCG 3 cut(s) 200, 326, 686
AciI CCGC 6 cut(s) 135, 326, 342, 620, 624, 686
AcsI RAATTY 1 cut(s) 595
AfaI GTAC 4 cut(s) 380, 428, 646, 716
AflII CTTAAG 1 cut(s) 374
AflIII ACRYGT 2 cut(s) 198, 771
AjuI GAANNNNNNNTTGG 1 cut(s) 828
AluBI AGCT 2 cut(s) 10, 761
AluI AGCT 2 cut(s) 10, 761
Alw21I GWGCWC 1 cut(s) 676
Alw26I GTCTC 1 cut(s) 89
AoxI GGCC 1 cut(s) 284
ApaI GGGCCC 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 617
ApoI RAATTY 1 cut(s) 595
ArsI GACNNNNNNTTYG 2 cut(s) 202, 234
Asp718I GGTACC 1 cut(s) 714
AspLEI GCGC 6 cut(s) 101, 326, 347, 455, 686, 855
AspS9I GGNCC 2 cut(s) 284, 285
AsuC2I CCSGG 1 cut(s) 610
AsuII TTCGAA 1 cut(s) 406
AxyI CCTNAGG 1 cut(s) 719
BaeGI GKGCMC 1 cut(s) 288
BanI GGYRCC 1 cut(s) 714
BanII GRGCYC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 1 cut(s) 604
BccI CCATC 1 cut(s) 544
BceAI ACGGC 2 cut(s) 355, 681
BcgI CGANNNNNNTGC 2 cut(s) 448, 482
BclI TGATCA 2 cut(s) 186, 691
BcnI CCSGG 1 cut(s) 610
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 1 cut(s) 654
BfoI RGCGCY 2 cut(s) 348, 856
BfrI CTTAAG 1 cut(s) 374
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 3 cut(s) 327, 343, 618
BlsI GCNGC 3 cut(s) 328, 344, 619
Bme1390I CCNGG 1 cut(s) 610
BmgT120I GGNCC 2 cut(s) 284, 285
BmiI GGNNCC 2 cut(s) 286, 716
BmrFI CCNGG 1 cut(s) 610
BpmI CTGGAG 1 cut(s) 755
Bpu14I TTCGAA 1 cut(s) 406
BpuMI CCSGG 1 cut(s) 610
BsaWI WCCGGW 1 cut(s) 634
Bse1I ACTGG 1 cut(s) 213
Bse21I CCTNAGG 1 cut(s) 719
BseGI GGATG 2 cut(s) 559, 794
BseMII CTCAG 4 cut(s) 134, 344, 471, 710
BseNI ACTGG 1 cut(s) 213
BseRI GAGGAG 3 cut(s) 346, 592, 736
BseSI GKGCMC 1 cut(s) 288
BseXI GCAGC 1 cut(s) 604
Bsh1236I CGCG 3 cut(s) 200, 326, 686
BshFI GGCC 1 cut(s) 286
BshNI GGYRCC 1 cut(s) 714
BsiHKAI GWGCWC 1 cut(s) 676
BsiSI CCGG 2 cut(s) 609, 635
BslFI GGGAC 2 cut(s) 25, 712
BsmAI GTCTC 1 cut(s) 89
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 2 cut(s) 25, 712
BsmI GAATGC 2 cut(s) 326, 357
BsnI GGCC 1 cut(s) 286
Bsp119I TTCGAA 1 cut(s) 406
Bsp120I GGGCCC 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 288, 676
Bsp143I GATC 2 cut(s) 186, 691
BspACI CCGC 6 cut(s) 135, 326, 342, 620, 624, 686
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 4 cut(s) 133, 345, 472, 711
BspFNI CGCG 3 cut(s) 200, 326, 686
BspHI TCATGA 1 cut(s) 183
BspLI GGNNCC 2 cut(s) 286, 716
BspMI ACCTGC 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 824
BspT104I TTCGAA 1 cut(s) 406
BspT107I GGYRCC 1 cut(s) 714
BspTI CTTAAG 1 cut(s) 374
BsrI ACTGG 1 cut(s) 213
BssMI GATC 2 cut(s) 186, 691
Bst6I CTCTTC 1 cut(s) 824
BstAFI CTTAAG 1 cut(s) 374
BstBI TTCGAA 1 cut(s) 406
BstC8I GCNNGC 2 cut(s) 457, 622
BstDEI CTNAG 4 cut(s) 120, 353, 480, 719
BstF5I GGATG 2 cut(s) 559, 794
BstFNI CGCG 3 cut(s) 200, 326, 686
BstH2I RGCGCY 2 cut(s) 348, 856
BstHHI GCGC 6 cut(s) 101, 326, 347, 455, 686, 855
BstKTI GATC 2 cut(s) 189, 694
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 2 cut(s) 186, 691
BstMWI GCNNNNNNNGC 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 775
BstSCI CCNGG 1 cut(s) 608
BstSLI GKGCMC 1 cut(s) 288
BstUI CGCG 3 cut(s) 200, 326, 686
BstV1I GCAGC 1 cut(s) 604
BstXI CCANNNNNNTGG 1 cut(s) 220
Bsu36I CCTNAGG 1 cut(s) 719
BsuRI GGCC 1 cut(s) 286
BtgZI GCGATG 1 cut(s) 563
BtsCI GGATG 2 cut(s) 559, 794
BtsIMutI CAGTG 1 cut(s) 220
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 2 cut(s) 457, 622
CciI TCATGA 1 cut(s) 183
CfoI GCGC 6 cut(s) 101, 326, 347, 455, 686, 855
Cfr13I GGNCC 2 cut(s) 284, 285
Csp6I GTAC 4 cut(s) 379, 427, 645, 715
CviAII CATG 4 cut(s) 184, 702, 710, 772
CviJI RGCY 9 cut(s) 10, 286, 294, 366, 668, 733, 761, 803, 834
CviKI_1 RGCY 9 cut(s) 10, 286, 294, 366, 668, 733, 761, 803, 834
CviQI GTAC 4 cut(s) 379, 427, 645, 715
DdeI CTNAG 4 cut(s) 120, 353, 480, 719
DpnI GATC 2 cut(s) 188, 693
DpnII GATC 2 cut(s) 186, 691
Eam1104I CTCTTC 1 cut(s) 824
EarI CTCTTC 1 cut(s) 824
Eco24I GRGCYC 1 cut(s) 288
Eco81I CCTNAGG 1 cut(s) 719
EcoRI GAATTC 1 cut(s) 595
EcoT38I GRGCYC 1 cut(s) 288
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 4 cut(s) 187, 705, 713, 775
FaqI GGGAC 2 cut(s) 25, 712
FatI CATG 4 cut(s) 183, 701, 709, 771
FauI CCCGC 1 cut(s) 613
FbaI TGATCA 2 cut(s) 186, 691
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 327, 343, 618
FokI GGATG 2 cut(s) 566, 801
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 3 cut(s) 327, 343, 618
FspBI CTAG 1 cut(s) 654
FspI TGCGCA 1 cut(s) 454
GlaI GCGC 6 cut(s) 100, 325, 346, 454, 685, 854
GluI GCNGC 3 cut(s) 327, 343, 618
GsuI CTGGAG 1 cut(s) 755
HaeII RGCGCY 2 cut(s) 348, 856
HaeIII GGCC 1 cut(s) 286
HapII CCGG 2 cut(s) 609, 635
HhaI GCGC 6 cut(s) 101, 326, 347, 455, 686, 855
Hin1II CATG 4 cut(s) 187, 705, 713, 775
Hin6I GCGC 6 cut(s) 99, 324, 345, 453, 684, 853
HinP1I GCGC 6 cut(s) 99, 324, 345, 453, 684, 853
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HinfI GANTC 2 cut(s) 110, 163
HpaII CCGG 2 cut(s) 609, 635
Hpy166II GTNNAC 2 cut(s) 175, 769
Hpy188I TCNGA 4 cut(s) 109, 123, 191, 354
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 2 cut(s) 175, 769
HpyAV CCTTC 1 cut(s) 310
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 709
HpyF10VI GCNNNNNNNGC 1 cut(s) 363
HpyF3I CTNAG 4 cut(s) 120, 353, 480, 719
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 4 cut(s) 187, 705, 713, 775
HspAI GCGC 6 cut(s) 99, 324, 345, 453, 684, 853
KpnI GGTACC 1 cut(s) 718
Ksp22I TGATCA 2 cut(s) 186, 691
Kzo9I GATC 2 cut(s) 186, 691
LguI GCTCTTC 1 cut(s) 824
Lsp1109I GCAGC 1 cut(s) 604
MaeI CTAG 1 cut(s) 654
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 335
MalI GATC 2 cut(s) 188, 693
MboI GATC 2 cut(s) 186, 691
MboII GAAGA 4 cut(s) 85, 401, 577, 841
MhlI GDGCHC 2 cut(s) 288, 676
MluCI AATT 1 cut(s) 595
MluI ACGCGT 1 cut(s) 198
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 572
MnlI CCTC 6 cut(s) 305, 324, 538, 570, 714, 802
MseI TTAA 3 cut(s) 375, 513, 816
MslI CAYNNNNRTG 1 cut(s) 199
MspCI CTTAAG 1 cut(s) 374
MspI CCGG 2 cut(s) 609, 635
MspR9I CCNGG 1 cut(s) 610
Mva1269I GAATGC 2 cut(s) 326, 357
MvnI CGCG 3 cut(s) 200, 326, 686
MwoI GCNNNNNNNGC 1 cut(s) 363
NciI CCSGG 1 cut(s) 610
NdeII GATC 2 cut(s) 186, 691
NlaIII CATG 4 cut(s) 187, 705, 713, 775
NlaIV GGNNCC 2 cut(s) 286, 716
NmuCI GTSAC 1 cut(s) 335
NsbI TGCGCA 1 cut(s) 454
NspI RCATGY 1 cut(s) 775
NspV TTCGAA 1 cut(s) 406
PagI TCATGA 1 cut(s) 183
PciI ACATGT 1 cut(s) 771
PciSI GCTCTTC 1 cut(s) 824
PcsI WCGNNNNNNNCGW 2 cut(s) 242, 503
PctI GAATGC 2 cut(s) 326, 357
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 3 cut(s) 328, 344, 619
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PscI ACATGT 1 cut(s) 771
PsiI TTATAA 1 cut(s) 605
PspN4I GGNNCC 2 cut(s) 286, 716
PspOMI GGGCCC 1 cut(s) 284
PspPI GGNCC 2 cut(s) 284, 285
RsaI GTAC 4 cut(s) 380, 428, 646, 716
RsaNI GTAC 4 cut(s) 379, 427, 645, 715
RseI CAYNNNNRTG 1 cut(s) 199
SapI GCTCTTC 1 cut(s) 824
SaqAI TTAA 3 cut(s) 375, 513, 816
SatI GCNGC 3 cut(s) 327, 343, 618
Sau3AI GATC 2 cut(s) 186, 691
Sau96I GGNCC 2 cut(s) 284, 285
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 610
SduI GDGCHC 2 cut(s) 288, 676
SetI ASST 9 cut(s) 12, 71, 128, 174, 232, 443, 720, 763, 813
SfuI TTCGAA 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 1 cut(s) 595
SsiI CCGC 6 cut(s) 135, 326, 342, 620, 624, 686
SspMI CTAG 1 cut(s) 654
StyD4I CCNGG 1 cut(s) 608
TaiI ACGT 1 cut(s) 174
TaqI TCGA 3 cut(s) 406, 468, 506
TasI AATT 1 cut(s) 595
TatI WGTACW 1 cut(s) 426
TauI GCSGC 2 cut(s) 329, 345
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 3 cut(s) 375, 513, 816
Tru9I TTAA 3 cut(s) 375, 513, 816
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 1 cut(s) 617
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 4 cut(s) 350, 434, 486, 584
TspGWI ACGGA 1 cut(s) 294
TspRI CASTG 1 cut(s) 220
Vha464I CTTAAG 1 cut(s) 374
XapI RAATTY 1 cut(s) 595
XceI RCATGY 1 cut(s) 775
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.