Rh1BG366800

Pentatricopeptide repeat-containing protein At5g66520-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
49667672 .. 49669249
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG366800.1

Sequence Viewer

Length: 1578 bp
ATGTCGAGTCTTAGAACCACACTCTTACACCTACTCGAAGAATGCAAGAACATGAGAGAGCTGAAACAAATCCACACCCACATCATAAAGTCCCCATTTTTACTCAAACAAGACCAATCCTTTCTCATCACTCGTCTCCTATTCTTCTGCGCTCTATCCGATTCGGGTTCTCAGACCTACGCCACCGGAGTTTTCCGGGTCATAAAGAACCCGACTCTCTACGTCTACAACATCATGATCAGAGCACACGCGTGTAGAAAGACCAGTGCTTTGGATAAACCTGCTTCGTTTCGGTCGTTGGTGTTGTATAAGCAAATGGTTGGTAATGGGATTGGGCCCAATTGCCTCACTTTTCCGTTTCTTGTGAAGGAATGCGCGGCGAGGGTTGACGGCGGCGCTGGCCGGAGCTTTCATGGTCAGGTGATTAAGTACGGGTTTGGAGATGATGTGTTTGTTCGAAACTCGTTGATGAATATGTACTTTGTTTGTGGGTCTTTGAGTTGCGCACGCAAGGTGTTCGATGAAATTCCTGAGAGAGATGTGGTTTCGTGGAACTTGATGATTAAGGGGTGTTTGAGAAGTGGGGAACTTGATGAGGCGATGGGTGTGTTTGGGAAGATGAAGCAGAGGAGCATTTTTAGTTGGAATTCCATTATAACCGGGTGTGTTCAAGGCGGTCGGCCGAAGGAGGCATTGGAACTTTTTCATGAAATGCAGGTTGCGGGCGGTGTTAGACCGGATAAGATTACGATTGCTAGTGTCCTTGCGGCTTGTGCTCATCTTGGCGCGGTTGATCACGGGACATGGGTGCATGGGTGCCTGAGGAGAAGTGGGCTGGAGAGTGATGTGGTTATTGGAACAGCTCTGGTTGACATGTATGGTAAATGTGGATGTGTGGAAAAAGCTTATGAGGTCTTTAAGGAAATGCCGAAGAAAGATACTTTGGCATGGACAGCTATGATTTCGGTTTTTGCTCTCCATGGGTTTGGCAATGAGGCTTTTGATCTTTTTGAAAAGATGGAAGCAACTGGGGTTGAGCCGAATCATGTGACGTTTGTTGGGTTGTTGTCAGCTTGTGCTCATTCCGGTTTAGTAGAGAAAGGTCGCTGGTGTTTTGATGTGATGAGACGTGTTTACTTAATTGAACCACAGCTTTATCATTATGCATGCATGGTTGATATACTTAGCAGAGCCGGGCTAATTGAAGAGGCGGAGAGGTTGATAAGAGGCATGCCAATGAAGCCAGATGTATTTGTTTGGGGTGCATTACTTGGAGGTTGTCAAATACATGGAAAGGTTGAGATAGGAGAACTGGTGGCCCGTCATTTAATTGATATGGAACCTCTGAACCATGCTTTTTATGTCAACTTGTGCGATATATATGCCAAAGCTGGTAGATTTAATGATGTGAAAACAATTAAATCACTTATGAAAGAAAGAGGGATCAAAAAGGAAGTTGCAGGCTGTAGCCTGATTGAAGTCGATGGAGTTGTTCTTGAATTCTCAGTCAGAGGATCCCCTGATGTTGTAATGGATGAAGTATTATGGGTCTTGAGTCAGTTGAATAGTGAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

525

Amino Acids

58.4

Weight (kDa)

7.8

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 179 - 212 5.2e-08 PPR repeat family
PPR PF01535 182 - 211 2.1e-08 PPR repeat
PPR_2 PF13041 211 - 260 1.5e-09 PPR repeat family
PPR PF01535 213 - 242 3.2e-08 PPR repeat
PPR_2 PF13041 313 - 361 5e-10 PPR repeat family
E_motif PF20431 430 - 493 7e-14 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011997)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 656
Acc16I TGCGCA 1 cut(s) 505
Acc36I ACCTGC 2 cut(s) 289, 706
AccB1I GGYRCC 1 cut(s) 816
AccI GTMKAC 1 cut(s) 225
AccII CGCG 3 cut(s) 251, 377, 788
AciI CCGC 8 cut(s) 377, 393, 675, 722, 726, 767, 788, 1211
AclWI GGATC 3 cut(s) 1451, 1509, 1522
AcoI YGGCCR 2 cut(s) 400, 680
AcsI RAATTY 3 cut(s) 525, 646, 1499
AfaI GTAC 2 cut(s) 431, 479
AflIII ACRYGT 3 cut(s) 249, 873, 1129
AgsI TTSAA 7 cut(s) 671, 1013, 1145, 1205, 1478, 1499, 1564
AjiI CACGTC 1 cut(s) 1130
AjuI GAANNNNNNNTTGG 4 cut(s) 677, 709, 926, 958
AleI CACNNNNGTG 1 cut(s) 250
AluBI AGCT 8 cut(s) 61, 408, 863, 905, 956, 1073, 1153, 1391
AluI AGCT 8 cut(s) 61, 408, 863, 905, 956, 1073, 1153, 1391
Alw21I GWGCWC 3 cut(s) 247, 778, 1081
Alw26I GTCTC 2 cut(s) 140, 1120
AlwI GGATC 3 cut(s) 1451, 1509, 1522
AoxI GGCC 5 cut(s) 335, 400, 680, 1317, 1572
ApaI GGGCCC 1 cut(s) 339
ApoI RAATTY 3 cut(s) 525, 646, 1499
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
Asp700I GAANNNNTTC 1 cut(s) 702
AspLEI GCGC 5 cut(s) 152, 377, 398, 506, 788
AspS9I GGNCC 3 cut(s) 335, 336, 1318
AsuC2I CCSGG 3 cut(s) 197, 661, 1195
AsuHPI GGTGA 1 cut(s) 433
AsuII TTCGAA 1 cut(s) 457
AxyI CCTNAGG 1 cut(s) 821
BaeGI GKGCMC 1 cut(s) 339
BamHI GGATCC 1 cut(s) 1514
BanI GGYRCC 1 cut(s) 816
BanII GRGCYC 1 cut(s) 339
Bbv12I GWGCWC 3 cut(s) 247, 778, 1081
BccI CCATC 3 cut(s) 595, 1012, 1478
BceAI ACGGC 1 cut(s) 406
BcgI CGANNNNNNTGC 4 cut(s) 499, 533, 1364, 1398
BclI TGATCA 2 cut(s) 237, 793
BcnI CCSGG 3 cut(s) 197, 661, 1195
BcoDI GTCTC 2 cut(s) 140, 1120
BfaI CTAG 2 cut(s) 756, 1576
BfmI CTRYAG 1 cut(s) 1465
BfoI RGCGCY 1 cut(s) 399
BfuAI ACCTGC 2 cut(s) 289, 706
BisI GCNGC 3 cut(s) 378, 394, 768
BlsI GCNGC 3 cut(s) 379, 395, 769
Bme1390I CCNGG 3 cut(s) 197, 661, 1195
BmgBI CACGTC 1 cut(s) 1130
BmgT120I GGNCC 3 cut(s) 335, 336, 1318
BmiI GGNNCC 4 cut(s) 337, 818, 1341, 1516
BmrFI CCNGG 3 cut(s) 197, 661, 1195
BmrI ACTGGG 1 cut(s) 1038
BmuI ACTGGG 1 cut(s) 1038
BpmI CTGGAG 1 cut(s) 857
Bpu14I TTCGAA 1 cut(s) 457
BpuEI CTTGAG 1 cut(s) 1573
BpuMI CCSGG 3 cut(s) 197, 661, 1195
BsaJI CCNNGG 1 cut(s) 979
BsaWI WCCGGW 3 cut(s) 185, 736, 1085
BsaXI ACNNNNNCTCC 4 cut(s) 432, 462, 1299, 1329
Bse1I ACTGG 3 cut(s) 264, 1033, 1317
Bse21I CCTNAGG 1 cut(s) 821
Bse3DI GCAATG 1 cut(s) 997
BseDI CCNNGG 1 cut(s) 979
BseGI GGATG 2 cut(s) 896, 1540
BseMI GCAATG 1 cut(s) 997
BseMII CTCAG 4 cut(s) 185, 522, 812, 1518
BseNI ACTGG 3 cut(s) 264, 1033, 1317
BseRI GAGGAG 2 cut(s) 643, 838
BseSI GKGCMC 1 cut(s) 339
BseX3I CGGCCG 1 cut(s) 680
Bsh1236I CGCG 3 cut(s) 251, 377, 788
Bsh1285I CGRYCG 3 cut(s) 296, 679, 683
BshFI GGCC 5 cut(s) 337, 402, 682, 1319, 1574
BshNI GGYRCC 1 cut(s) 816
BsiEI CGRYCG 3 cut(s) 296, 679, 683
BsiHKAI GWGCWC 3 cut(s) 247, 778, 1081
BsiSI CCGG 7 cut(s) 186, 196, 403, 660, 737, 1086, 1194
BslFI GGGAC 2 cut(s) 76, 814
BsmAI GTCTC 2 cut(s) 140, 1120
BsmBI CGTCTC 2 cut(s) 140, 1120
BsmFI GGGAC 2 cut(s) 76, 814
BsmI GAATGC 2 cut(s) 47, 377
BsnI GGCC 5 cut(s) 337, 402, 682, 1319, 1574
Bsp119I TTCGAA 1 cut(s) 457
Bsp120I GGGCCC 1 cut(s) 335
Bsp1286I GDGCHC 4 cut(s) 247, 339, 778, 1081
Bsp143I GATC 5 cut(s) 237, 793, 1003, 1443, 1514
Bsp19I CCATGG 1 cut(s) 979
BspACI CCGC 8 cut(s) 377, 393, 675, 722, 726, 767, 788, 1211
BspANI GGCC 5 cut(s) 337, 402, 682, 1319, 1574
BspCNI CTCAG 4 cut(s) 184, 523, 813, 1517
BspFNI CGCG 3 cut(s) 251, 377, 788
BspHI TCATGA 2 cut(s) 234, 706
BspLI GGNNCC 4 cut(s) 337, 818, 1341, 1516
BspMI ACCTGC 2 cut(s) 289, 706
BspPI GGATC 3 cut(s) 1451, 1509, 1522
BspT104I TTCGAA 1 cut(s) 457
BspT107I GGYRCC 1 cut(s) 816
BsrDI GCAATG 1 cut(s) 997
BsrI ACTGG 3 cut(s) 264, 1033, 1317
BssECI CCNNGG 1 cut(s) 979
BssMI GATC 5 cut(s) 237, 793, 1003, 1443, 1514
BssT1I CCWWGG 1 cut(s) 979
Bst6I CTCTTC 1 cut(s) 1200
BstBI TTCGAA 1 cut(s) 457
BstC8I GCNNGC 6 cut(s) 400, 508, 724, 1168, 1232, 1462
BstDEI CTNAG 6 cut(s) 11, 171, 531, 821, 1184, 1504
BstDSI CCRYGG 1 cut(s) 979
BstF5I GGATG 2 cut(s) 896, 1540
BstFNI CGCG 3 cut(s) 251, 377, 788
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 5 cut(s) 152, 377, 398, 506, 788
BstKTI GATC 5 cut(s) 240, 796, 1006, 1446, 1517
BstMAI GTCTC 2 cut(s) 140, 1120
BstMBI GATC 5 cut(s) 237, 793, 1003, 1443, 1514
BstMCI CGRYCG 3 cut(s) 296, 679, 683
BstMWI GCNNNNNNNGC 4 cut(s) 399, 773, 953, 1240
BstNSI RCATGY 3 cut(s) 877, 1170, 1234
BstSCI CCNGG 3 cut(s) 195, 659, 1193
BstSFI CTRYAG 1 cut(s) 1465
BstSLI GKGCMC 1 cut(s) 339
BstUI CGCG 3 cut(s) 251, 377, 788
BstX2I RGATCY 1 cut(s) 1514
BstXI CCANNNNNNTGG 2 cut(s) 271, 986
BstYI RGATCY 1 cut(s) 1514
BstZI CGGCCG 1 cut(s) 680
Bsu36I CCTNAGG 1 cut(s) 821
BsuRI GGCC 5 cut(s) 337, 402, 682, 1319, 1574
BtgI CCRYGG 1 cut(s) 979
BtgZI GCGATG 1 cut(s) 614
BtrI CACGTC 1 cut(s) 1130
BtsCI GGATG 2 cut(s) 896, 1540
BtsIMutI CAGTG 1 cut(s) 271
BveI ACCTGC 2 cut(s) 289, 706
Cac8I GCNNGC 6 cut(s) 400, 508, 724, 1168, 1232, 1462
CciI TCATGA 2 cut(s) 234, 706
CfoI GCGC 5 cut(s) 152, 377, 398, 506, 788
Cfr13I GGNCC 3 cut(s) 335, 336, 1318
Csp6I GTAC 2 cut(s) 430, 478
CviQI GTAC 2 cut(s) 430, 478
DdeI CTNAG 6 cut(s) 11, 171, 531, 821, 1184, 1504
DpnI GATC 5 cut(s) 239, 795, 1005, 1445, 1516
DpnII GATC 5 cut(s) 237, 793, 1003, 1443, 1514
EaeI YGGCCR 2 cut(s) 400, 680
EagI CGGCCG 1 cut(s) 680
Eam1104I CTCTTC 1 cut(s) 1200
EarI CTCTTC 1 cut(s) 1200
EciI GGCGGA 1 cut(s) 1226
EclXI CGGCCG 1 cut(s) 680
Eco130I CCWWGG 1 cut(s) 979
Eco147I AGGCCT 1 cut(s) 1574
Eco24I GRGCYC 1 cut(s) 339
Eco52I CGGCCG 1 cut(s) 680
Eco81I CCTNAGG 1 cut(s) 821
EcoRI GAATTC 2 cut(s) 646, 1499
EcoT14I CCWWGG 1 cut(s) 979
EcoT22I ATGCAT 2 cut(s) 1168, 1172
EcoT38I GRGCYC 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 979
Esp3I CGTCTC 2 cut(s) 140, 1120
FaqI GGGAC 2 cut(s) 76, 814
FauI CCCGC 1 cut(s) 715
FbaI TGATCA 2 cut(s) 237, 793
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 3 cut(s) 378, 394, 768
FokI GGATG 2 cut(s) 903, 1547
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 3 cut(s) 378, 394, 768
FspBI CTAG 2 cut(s) 756, 1576
FspI TGCGCA 1 cut(s) 505
GlaI GCGC 5 cut(s) 151, 376, 397, 505, 787
GluI GCNGC 3 cut(s) 378, 394, 768
GsuI CTGGAG 1 cut(s) 857
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 5 cut(s) 337, 402, 682, 1319, 1574
HapII CCGG 7 cut(s) 186, 196, 403, 660, 737, 1086, 1194
HhaI GCGC 5 cut(s) 152, 377, 398, 506, 788
Hin6I GCGC 5 cut(s) 150, 375, 396, 504, 786
HinP1I GCGC 5 cut(s) 150, 375, 396, 504, 786
HincII GTYRAC 3 cut(s) 388, 871, 1366
HindII GTYRAC 3 cut(s) 388, 871, 1366
HindIII AAGCTT 1 cut(s) 903
HinfI GANTC 5 cut(s) 7, 161, 214, 1042, 1555
HpaII CCGG 7 cut(s) 186, 196, 403, 660, 737, 1086, 1194
HphI GGTGA 1 cut(s) 433
Hpy166II GTNNAC 5 cut(s) 226, 388, 871, 1135, 1366
Hpy188I TCNGA 5 cut(s) 160, 174, 242, 1347, 1511
Hpy188III TCNNGA 5 cut(s) 235, 530, 707, 1496, 1552
Hpy8I GTNNAC 5 cut(s) 226, 388, 871, 1135, 1366
HpyAV CCTTC 2 cut(s) 361, 679
HpyCH4IV ACGT 3 cut(s) 222, 1052, 1129
HpyCH4V TGCA 7 cut(s) 45, 715, 811, 1166, 1170, 1265, 1460
HpyF10VI GCNNNNNNNGC 4 cut(s) 399, 773, 953, 1240
HpyF3I CTNAG 6 cut(s) 11, 171, 531, 821, 1184, 1504
HpySE526I ACGT 3 cut(s) 222, 1052, 1129
HspAI GCGC 5 cut(s) 150, 375, 396, 504, 786
Ksp22I TGATCA 2 cut(s) 237, 793
Kzo9I GATC 5 cut(s) 237, 793, 1003, 1443, 1514
LmnI GCTCC 2 cut(s) 405, 630
MaeI CTAG 2 cut(s) 756, 1576
MaeII ACGT 3 cut(s) 222, 1052, 1129
MaeIII GTNAC 1 cut(s) 1048
MalI GATC 5 cut(s) 239, 795, 1005, 1445, 1516
MboI GATC 5 cut(s) 237, 793, 1003, 1443, 1514
MboII GAAGA 5 cut(s) 50, 136, 628, 943, 1217
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 1 cut(s) 1514
MhlI GDGCHC 4 cut(s) 247, 339, 778, 1081
MluCI AATT 8 cut(s) 340, 525, 646, 1140, 1200, 1329, 1416, 1499
MluI ACGCGT 1 cut(s) 249
MlyI GAGTC 3 cut(s) 16, 208, 1564
MmeI TCCRAC 1 cut(s) 623
Mph1103I ATGCAT 2 cut(s) 1168, 1172
MroXI GAANNNNTTC 1 cut(s) 702
MseI TTAA 7 cut(s) 426, 564, 918, 1139, 1328, 1401, 1419
MslI CAYNNNNRTG 2 cut(s) 250, 1235
MspI CCGG 7 cut(s) 186, 196, 403, 660, 737, 1086, 1194
MspR9I CCNGG 3 cut(s) 197, 661, 1195
MunI CAATTG 1 cut(s) 340
Mva1269I GAATGC 2 cut(s) 47, 377
MvnI CGCG 3 cut(s) 251, 377, 788
MwoI GCNNNNNNNGC 4 cut(s) 399, 773, 953, 1240
NciI CCSGG 3 cut(s) 197, 661, 1195
NcoI CCATGG 1 cut(s) 979
NdeII GATC 5 cut(s) 237, 793, 1003, 1443, 1514
NlaIV GGNNCC 4 cut(s) 337, 818, 1341, 1516
NmuCI GTSAC 1 cut(s) 1048
NsbI TGCGCA 1 cut(s) 505
NsiI ATGCAT 2 cut(s) 1168, 1172
NspI RCATGY 3 cut(s) 877, 1170, 1234
NspV TTCGAA 1 cut(s) 457
OliI CACNNNNGTG 1 cut(s) 250
PaeI GCATGC 2 cut(s) 1170, 1234
PagI TCATGA 2 cut(s) 234, 706
PceI AGGCCT 1 cut(s) 1574
PciI ACATGT 1 cut(s) 873
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PctI GAATGC 2 cut(s) 47, 377
PdmI GAANNNNTTC 1 cut(s) 702
PfeI GAWTC 2 cut(s) 161, 1042
PkrI GCNGC 3 cut(s) 379, 395, 769
PleI GAGTC 3 cut(s) 15, 208, 1563
PpsI GAGTC 3 cut(s) 15, 208, 1563
PscI ACATGT 1 cut(s) 873
PsiI TTATAA 1 cut(s) 656
PspN4I GGNNCC 4 cut(s) 337, 818, 1341, 1516
PspOMI GGGCCC 1 cut(s) 335
PspPI GGNCC 3 cut(s) 335, 336, 1318
PsuI RGATCY 1 cut(s) 1514
RsaI GTAC 2 cut(s) 431, 479
RsaNI GTAC 2 cut(s) 430, 478
RseI CAYNNNNRTG 2 cut(s) 250, 1235
SaqAI TTAA 7 cut(s) 426, 564, 918, 1139, 1328, 1401, 1419
SatI GCNGC 3 cut(s) 378, 394, 768
Sau3AI GATC 5 cut(s) 237, 793, 1003, 1443, 1514
Sau96I GGNCC 3 cut(s) 335, 336, 1318
SchI GAGTC 3 cut(s) 16, 208, 1564
ScrFI CCNGG 3 cut(s) 197, 661, 1195
SduI GDGCHC 4 cut(s) 247, 339, 778, 1081
SfcI CTRYAG 1 cut(s) 1465
SfuI TTCGAA 1 cut(s) 457
SmiMI CAYNNNNRTG 2 cut(s) 250, 1235
SmlI CTYRAG 1 cut(s) 1552
SmoI CTYRAG 1 cut(s) 1552
SphI GCATGC 2 cut(s) 1170, 1234
Sse9I AATT 8 cut(s) 340, 525, 646, 1140, 1200, 1329, 1416, 1499
SseBI AGGCCT 1 cut(s) 1574
SsiI CCGC 8 cut(s) 377, 393, 675, 722, 726, 767, 788, 1211
SspMI CTAG 2 cut(s) 756, 1576
StuI AGGCCT 1 cut(s) 1574
StyD4I CCNGG 3 cut(s) 195, 659, 1193
StyI CCWWGG 1 cut(s) 979
TaiI ACGT 3 cut(s) 225, 1055, 1132
TaqI TCGA 5 cut(s) 5, 36, 457, 519, 1482
TaqII GACCGA 1 cut(s) 282
TasI AATT 8 cut(s) 340, 525, 646, 1140, 1200, 1329, 1416, 1499
TatI WGTACW 1 cut(s) 477
TauI GCSGC 3 cut(s) 380, 396, 770
TfiI GAWTC 2 cut(s) 161, 1042
Tru1I TTAA 7 cut(s) 426, 564, 918, 1139, 1328, 1401, 1419
Tru9I TTAA 7 cut(s) 426, 564, 918, 1139, 1328, 1401, 1419
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 1048
Tsp45I GTSAC 1 cut(s) 1048
TspDTI ATGAA 9 cut(s) 401, 485, 537, 635, 695, 723, 1253, 1445, 1551
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 1 cut(s) 271
XapI RAATTY 3 cut(s) 525, 646, 1499
XceI RCATGY 3 cut(s) 877, 1170, 1234
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 702
XspI CTAG 2 cut(s) 756, 1576
Zsp2I ATGCAT 2 cut(s) 1168, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.