Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003930

Physical Location & Seq

Genomic Coordinates Reverse (-)

64155771 .. 64158012

Gene Structure 2242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAAGGAGAAATCGCAGTACCCAACTGGTTTGGCCGGGGAGGGCAAAGCTAGAAATGACGGCAGAAGAGACGAGAAATTAGAAGTGGGTAGAGCGATTGAACAGGTTAGATACAAACGAAGCTCGAACTTGGATGAGATAATGAAAGATGGAGCAAGTGCGTCCCTTACTGAACATGCTCCTGAATCAAGCAGCTTAAATTTGCCAGAAGCCAAAGGTCCAAAGCAAAAAGTACAGGATGGTCATTCTACCAAAACCAAATGCATTTCTGTTCTTGCAGGTCAAGGCACTCAAGATGAACAGTCTCCAGGAGGTGGGAATGCAAAACATGAAAGTGAAAAGATCCAGCGGCTGTCCAAATCCAAGAAGAAGAAAGATCTTAACTTGCCTCGTCGTGCTTCTAAGCGACTAGCTGGTATTGAAGTTGATACAGTGCCAGAACTGAAAGCAAGCACTCGAGCACGTCGAGTTGGCAGCAAACAGTCGGATAATTCGGCTGGTTGTACATTCCAACAGCCAGAAAAGCAAGATTTTGCTTCTGTTGTTCAGGAAGAGCATGATAAGGCTGAAGAGAAGCCTGGAGTTCCTCCGGATTCGCCTCTTGCTGATTTCTTCACAGATCCATGCATTGCATTTGCAATAAAGACTCTAAAGGATCATTCGGGGAACGGAGAAACAGATATGAGCTATGAGAAGCAGGAATGCAATGTATTTCCGCCTCCAGGCAACTTGGTTAAACAAGAAAAACATGATGGCATAGTTGGAACTGGTGAGAAGTCGGGATCATCCATTACTGAACCGCCTTTCGGGAGTTCATGGCCGGACCCCTGCATTGAATTTGCTATAAAGACTCTCACTGGTGCAATCCCACTCGAGTATGACCCGCATATCGAGGAGTACTTCCAGAAGCAACTTGGTTCATCACAACAACACAAGGACAATCTTTTGCAAAAAGAGATTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

321

Amino Acids

35.12

Weight (kDa)

6.29

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52230 AT5G52230 AT5G52230
fragaria_vesca	FvH4_7g29290 FvH4_7g29290
malus_domestica	MD01G1199300.v1.1 MD07G1267200.v1.1
prunus_persica	Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1 Prupe.2G292800_v2.0.a1
pyrus_communis	pycom01g20920 pycom07g24480
rosa_chinensis	RchiOBHm_Chr1g0377031
rosa_laevigata	RLG00000026548
rosa_multiflora	Rmu_ssc0000155.1_g000022
rosa_roxburghii	Rroxscaffold_4G00281510
rosa_rugosa	Rorug01G0401000 Rorug01G0401100
rosa_samantha	Rh1AG418000 Rh1BG377300 Rh1CG391300 Rh1DG408000
rosa_wichuraiana	Rw1G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	269
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccIII	TCCGGA	1 cut(s)	589
AciI	CCGC	4 cut(s)	349, 716, 800, 884
AclWI	GGATC	4 cut(s)	337, 614, 663, 790
AcoI	YGGCCR	2 cut(s)	33, 818
AcsI	RAATTY	2 cut(s)	199, 836
AcuI	CTGAAG	1 cut(s)	588
AfaI	GTAC	4 cut(s)	20, 234, 505, 899
AfiI	CCNNNNNNNGG	3 cut(s)	314, 722, 806
AgsI	TTSAA	3 cut(s)	101, 422, 836
AjiI	CACGTC	1 cut(s)	464
AjnI	CCWGG	3 cut(s)	307, 577, 721
AluBI	AGCT	5 cut(s)	50, 123, 195, 413, 687
AluI	AGCT	5 cut(s)	50, 123, 195, 413, 687
Alw21I	GWGCWC	1 cut(s)	463
Alw26I	GTCTC	2 cut(s)	63, 309
AlwI	GGATC	4 cut(s)	337, 614, 663, 790
AlwNI	CAGNNNCTG	1 cut(s)	352
Ama87I	CYCGRG	2 cut(s)	456, 872
Aor13HI	TCCGGA	1 cut(s)	589
AoxI	GGCC	2 cut(s)	33, 818
ApeKI	GCWGC	2 cut(s)	192, 474
ApoI	RAATTY	2 cut(s)	199, 836
AspS9I	GGNCC	2 cut(s)	218, 823
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	782
AvaI	CYCGRG	2 cut(s)	456, 872
AvaII	GGWCC	2 cut(s)	218, 823
Bbv12I	GWGCWC	1 cut(s)	463
BbvI	GCAGC	2 cut(s)	204, 486
BccI	CCATC	3 cut(s)	143, 233, 746
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	3 cut(s)	309, 579, 723
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	63, 309
BfaI	CTAG	2 cut(s)	51, 410
BfuAI	ACCTGC	1 cut(s)	269
BglII	AGATCT	1 cut(s)	376
BisI	GCNGC	3 cut(s)	193, 350, 475
BlsI	GCNGC	3 cut(s)	194, 351, 476
BmcAI	AGTACT	1 cut(s)	899
Bme1390I	CCNGG	4 cut(s)	37, 309, 579, 723
Bme18I	GGWCC	2 cut(s)	218, 823
BmeT110I	CYCGRG	2 cut(s)	456, 872
BmgBI	CACGTC	1 cut(s)	464
BmgT120I	GGNCC	2 cut(s)	218, 823
BmiI	GGNNCC	1 cut(s)	825
BmrFI	CCNGG	4 cut(s)	37, 309, 579, 723
BpmI	CTGGAG	3 cut(s)	291, 600, 705
BpuEI	CTTGAG	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 722, 806
Bse1I	ACTGG	3 cut(s)	31, 772, 862
Bse3DI	GCAATG	2 cut(s)	627, 712
BseAI	TCCGGA	1 cut(s)	589
BseBI	CCWGG	3 cut(s)	309, 579, 723
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	3 cut(s)	139, 244, 785
BseLI	CCNNNNNNNGG	3 cut(s)	314, 722, 806
BseMI	GCAATG	2 cut(s)	627, 712
BseNI	ACTGG	3 cut(s)	31, 772, 862
BseRI	GAGGAG	1 cut(s)	908
BseXI	GCAGC	2 cut(s)	204, 486
BshFI	GGCC	2 cut(s)	35, 820
BsiHKAI	GWGCWC	1 cut(s)	463
BsiHKCI	CYCGRG	2 cut(s)	456, 872
BsiSI	CCGG	3 cut(s)	36, 590, 821
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	3 cut(s)	314, 722, 806
BsmAI	GTCTC	2 cut(s)	63, 309
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	2 cut(s)	325, 707
BsnI	GGCC	2 cut(s)	35, 820
BsoBI	CYCGRG	2 cut(s)	456, 872
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp13I	TCCGGA	1 cut(s)	589
Bsp1407I	TGTACA	1 cut(s)	503
Bsp143I	GATC	5 cut(s)	342, 376, 619, 655, 782
BspACI	CCGC	4 cut(s)	349, 716, 800, 884
BspANI	GGCC	2 cut(s)	35, 820
BspEI	TCCGGA	1 cut(s)	589
BspLI	GGNNCC	1 cut(s)	825
BspMI	ACCTGC	1 cut(s)	269
BspPI	GGATC	4 cut(s)	337, 614, 663, 790
BspQI	GCTCTTC	1 cut(s)	546
BsrDI	GCAATG	2 cut(s)	627, 712
BsrGI	TGTACA	1 cut(s)	503
BsrI	ACTGG	3 cut(s)	31, 772, 862
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	5 cut(s)	342, 376, 619, 655, 782
Bst2UI	CCWGG	3 cut(s)	309, 579, 723
Bst4CI	ACNGT	3 cut(s)	303, 433, 483
Bst6I	CTCTTC	3 cut(s)	61, 546, 564
BstAUI	TGTACA	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	1 cut(s)	402
BstF5I	GGATG	3 cut(s)	139, 244, 785
BstKTI	GATC	5 cut(s)	345, 379, 622, 658, 785
BstMAI	GTCTC	2 cut(s)	63, 309
BstMBI	GATC	5 cut(s)	342, 376, 619, 655, 782
BstMWI	GCNNNNNNNGC	1 cut(s)	523
BstNI	CCWGG	3 cut(s)	309, 579, 723
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	4 cut(s)	35, 307, 577, 721
BstV1I	GCAGC	2 cut(s)	204, 486
BstX2I	RGATCY	3 cut(s)	342, 376, 619
BstYI	RGATCY	3 cut(s)	342, 376, 619
BsuRI	GGCC	2 cut(s)	35, 820
BtrI	CACGTC	1 cut(s)	464
BtsCI	GGATG	3 cut(s)	139, 244, 785
BtsIMutI	CAGTG	2 cut(s)	438, 855
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	451
CaiI	CAGNNNCTG	1 cut(s)	352
Cfr13I	GGNCC	2 cut(s)	218, 823
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	4 cut(s)	19, 233, 504, 898
CviAII	CATG	6 cut(s)	176, 329, 557, 624, 749, 816
CviQI	GTAC	4 cut(s)	19, 233, 504, 898
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	5 cut(s)	344, 378, 621, 657, 784
DpnII	GATC	5 cut(s)	342, 376, 619, 655, 782
EaeI	YGGCCR	2 cut(s)	33, 818
Eam1104I	CTCTTC	3 cut(s)	61, 546, 564
EarI	CTCTTC	3 cut(s)	61, 546, 564
EciI	GGCGGA	1 cut(s)	705
Eco47I	GGWCC	2 cut(s)	218, 823
Eco57I	CTGAAG	1 cut(s)	588
Eco88I	CYCGRG	2 cut(s)	456, 872
EcoRII	CCWGG	3 cut(s)	307, 577, 721
EcoT22I	ATGCAT	2 cut(s)	266, 629
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	6 cut(s)	179, 332, 560, 627, 752, 819
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	6 cut(s)	175, 328, 556, 623, 748, 815
FauI	CCCGC	1 cut(s)	891
Fnu4HI	GCNGC	3 cut(s)	193, 350, 475
FokI	GGATG	3 cut(s)	146, 251, 772
Fsp4HI	GCNGC	3 cut(s)	193, 350, 475
FspBI	CTAG	2 cut(s)	51, 410
GluI	GCNGC	3 cut(s)	193, 350, 475
GsuI	CTGGAG	3 cut(s)	291, 600, 705
HaeIII	GGCC	2 cut(s)	35, 820
HapII	CCGG	3 cut(s)	36, 590, 821
HgaI	GACGC	1 cut(s)	150
Hin1II	CATG	6 cut(s)	179, 332, 560, 627, 752, 819
HinfI	GANTC	4 cut(s)	185, 593, 646, 850
HpaII	CCGG	3 cut(s)	36, 590, 821
HphI	GGTGA	1 cut(s)	782
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	7 cut(s)	182, 293, 548, 590, 780, 808, 904
Hpy99I	CGWCG	2 cut(s)	396, 468
HpyCH4III	ACNGT	3 cut(s)	303, 433, 483
HpyCH4IV	ACGT	1 cut(s)	463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	523
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	6 cut(s)	179, 332, 560, 627, 752, 819
Kpn2I	TCCGGA	1 cut(s)	589
Kzo9I	GATC	5 cut(s)	342, 376, 619, 655, 782
LguI	GCTCTTC	1 cut(s)	546
LmnI	GCTCC	2 cut(s)	152, 184
Lsp1109I	GCAGC	2 cut(s)	204, 486
MaeI	CTAG	2 cut(s)	51, 410
MaeII	ACGT	1 cut(s)	463
MalI	GATC	5 cut(s)	344, 378, 621, 657, 784
MboI	GATC	5 cut(s)	342, 376, 619, 655, 782
MboII	GAAGA	6 cut(s)	78, 379, 382, 563, 581, 604
MflI	RGATCY	3 cut(s)	342, 376, 619
MhlI	GDGCHC	1 cut(s)	463
MluCI	AATT	4 cut(s)	77, 199, 490, 836
MlyI	GAGTC	2 cut(s)	640, 844
MmeI	TCCRAC	3 cut(s)	465, 535, 742
MnlI	CCTC	7 cut(s)	34, 305, 399, 597, 609, 729, 886
Mph1103I	ATGCAT	2 cut(s)	266, 629
MroI	TCCGGA	1 cut(s)	589
MseI	TTAA	3 cut(s)	197, 381, 735
MslI	CAYNNNNRTG	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	349
MspI	CCGG	3 cut(s)	36, 590, 821
MspR9I	CCNGG	4 cut(s)	37, 309, 579, 723
Mva1269I	GAATGC	2 cut(s)	325, 707
MvaI	CCWGG	3 cut(s)	309, 579, 723
MwoI	GCNNNNNNNGC	1 cut(s)	523
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	5 cut(s)	342, 376, 619, 655, 782
NlaIII	CATG	6 cut(s)	179, 332, 560, 627, 752, 819
NlaIV	GGNNCC	1 cut(s)	825
NsiI	ATGCAT	2 cut(s)	266, 629
NspI	RCATGY	1 cut(s)	179
PaeR7I	CTCGAG	2 cut(s)	456, 872
PciSI	GCTCTTC	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	1 cut(s)	463
PctI	GAATGC	2 cut(s)	325, 707
PfeI	GAWTC	2 cut(s)	185, 593
PflMI	CCANNNNNTGG	1 cut(s)	314
PfoI	TCCNGGA	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	194, 351, 476
PleI	GAGTC	2 cut(s)	640, 844
PpsI	GAGTC	2 cut(s)	640, 844
Psp6I	CCWGG	3 cut(s)	307, 577, 721
PspGI	CCWGG	3 cut(s)	307, 577, 721
PspN4I	GGNNCC	1 cut(s)	825
PspPI	GGNCC	2 cut(s)	218, 823
PspXI	VCTCGAGB	2 cut(s)	456, 872
PstNI	CAGNNNCTG	1 cut(s)	352
PsuI	RGATCY	3 cut(s)	342, 376, 619
RsaI	GTAC	4 cut(s)	20, 234, 505, 899
RsaNI	GTAC	4 cut(s)	19, 233, 504, 898
RseI	CAYNNNNRTG	1 cut(s)	333
SapI	GCTCTTC	1 cut(s)	546
SaqAI	TTAA	3 cut(s)	197, 381, 735
SatI	GCNGC	3 cut(s)	193, 350, 475
Sau3AI	GATC	5 cut(s)	342, 376, 619, 655, 782
Sau96I	GGNCC	2 cut(s)	218, 823
ScaI	AGTACT	1 cut(s)	899
SchI	GAGTC	2 cut(s)	640, 844
ScrFI	CCNGG	4 cut(s)	37, 309, 579, 723
SduI	GDGCHC	1 cut(s)	463
Sfr274I	CTCGAG	2 cut(s)	456, 872
SinI	GGWCC	2 cut(s)	218, 823
SlaI	CTCGAG	2 cut(s)	456, 872
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	3 cut(s)	291, 456, 872
SmoI	CTYRAG	3 cut(s)	291, 456, 872
Sse9I	AATT	4 cut(s)	77, 199, 490, 836
SsiI	CCGC	4 cut(s)	349, 716, 800, 884
SspMI	CTAG	2 cut(s)	51, 410
StyD4I	CCNGG	4 cut(s)	35, 307, 577, 721
TaaI	ACNGT	3 cut(s)	303, 433, 483
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	5 cut(s)	125, 457, 466, 873, 891
TasI	AATT	4 cut(s)	77, 199, 490, 836
TatI	WGTACW	3 cut(s)	232, 503, 897
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	2 cut(s)	185, 593
Tru1I	TTAA	3 cut(s)	197, 381, 735
Tru9I	TTAA	3 cut(s)	197, 381, 735
TscAI	CASTG	2 cut(s)	438, 862
TseI	GCWGC	2 cut(s)	192, 474
TspDTI	ATGAA	6 cut(s)	17, 158, 312, 345, 804, 909
TspGWI	ACGGA	1 cut(s)	684
TspRI	CASTG	2 cut(s)	438, 862
Van91I	CCANNNNNTGG	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	218, 823
XapI	RAATTY	2 cut(s)	199, 836
XceI	RCATGY	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	911
XhoI	CTCGAG	2 cut(s)	456, 872
XspI	CTAG	2 cut(s)	51, 410
ZrmI	AGTACT	1 cut(s)	899
Zsp2I	ATGCAT	2 cut(s)	266, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.