RchiOBHm_Chr1g0377731

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014824
Physical Location & Seq
Forward (+)
64498950 .. 64499498
549 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGGGGTGGGATCCAAAAGTGTGGGAAGATCCTATGGCTTTCAAGCCAGAGAGATTCTTGAGTGGTGGTGCAGGAGAAGGGTTTGATATAACGGGAAGTAGAGAGATCAAGATGATGCCTTTTGGGGCGGGAAGGAGAATTTGTCCTGCTTCTGGTTTAGCTATGCTTCATCTTGAGTATTTTGTCGCCAATCTGGTTTGGAGATTTGAATGGAAAGCTGTGGATGGAGACGATGGAGTTCACTATCCTTATGAAGAATCCATTGCAGGTCAATATATCAAACAGAGTGAACAAGTGAACAATCTGATTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00380 ko00830 ko00980 ko01100 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00980 map01100 map04913 map04917 map04927 map04934 map05204
Pfam Domains
Protein Families
p450

Protein Analysis

104

Amino Acids

11.79

Weight (kDa)

4.9

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 78 1.3e-18 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 257
AciI CCGC 1 cut(s) 128
AclWI GGATC 3 cut(s) 5, 18, 23
AcsI RAATTY 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 2 cut(s) 43, 209
AluBI AGCT 2 cut(s) 161, 218
AluI AGCT 2 cut(s) 161, 218
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 3 cut(s) 5, 18, 23
ApoI RAATTY 1 cut(s) 138
BamHI GGATCC 1 cut(s) 10
BccI CCATC 2 cut(s) 218, 227
BcoDI GTCTC 1 cut(s) 222
BfuAI ACCTGC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 12
BmsI GCATC 1 cut(s) 105
BpuEI CTTGAG 2 cut(s) 79, 194
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 261
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMI GCAATG 1 cut(s) 261
BsgI GTGCAG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 222
BsmBI CGTCTC 1 cut(s) 222
Bsp143I GATC 3 cut(s) 10, 28, 105
BspACI CCGC 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 257
BspPI GGATC 3 cut(s) 5, 18, 23
BsrDI GCAATG 1 cut(s) 261
BssMI GATC 3 cut(s) 10, 28, 105
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 3 cut(s) 13, 31, 108
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 3 cut(s) 10, 28, 105
BstX2I RGATCY 2 cut(s) 10, 28
BstXI CCANNNNNNTGG 1 cut(s) 21
BstYI RGATCY 2 cut(s) 10, 28
BtsCI GGATG 1 cut(s) 229
BveI ACCTGC 1 cut(s) 257
CviJI RGCY 4 cut(s) 38, 46, 161, 218
CviKI_1 RGCY 4 cut(s) 38, 46, 161, 218
DpnI GATC 3 cut(s) 12, 30, 107
DpnII GATC 3 cut(s) 10, 28, 105
Esp3I CGTCTC 1 cut(s) 222
FaiI YATR 6 cut(s) 35, 89, 164, 252, 276, 311
FauI CCCGC 1 cut(s) 121
FokI GGATG 1 cut(s) 236
HinfI GANTC 2 cut(s) 54, 257
Hpy166II GTNNAC 3 cut(s) 241, 290, 298
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 3 cut(s) 58, 109, 173
Hpy8I GTNNAC 3 cut(s) 241, 290, 298
HpyAV CCTTC 2 cut(s) 71, 126
HpyCH4V TGCA 2 cut(s) 71, 266
Kzo9I GATC 3 cut(s) 10, 28, 105
LpnPI CCDG 6 cut(s) 57, 60, 138, 159, 179, 252
LweI GCATC 1 cut(s) 105
MalI GATC 3 cut(s) 12, 30, 107
MboI GATC 3 cut(s) 10, 28, 105
MboII GAAGA 2 cut(s) 38, 266
MflI RGATCY 2 cut(s) 10, 28
MluCI AATT 1 cut(s) 138
NdeII GATC 3 cut(s) 10, 28, 105
NlaIV GGNNCC 1 cut(s) 12
PfeI GAWTC 2 cut(s) 54, 257
PspN4I GGNNCC 1 cut(s) 12
PsuI RGATCY 2 cut(s) 10, 28
Sau3AI GATC 3 cut(s) 10, 28, 105
SetI ASST 3 cut(s) 163, 220, 271
SfaNI GCATC 1 cut(s) 105
SmlI CTYRAG 2 cut(s) 58, 173
SmoI CTYRAG 2 cut(s) 58, 173
Sse9I AATT 1 cut(s) 138
SsiI CCGC 1 cut(s) 128
TasI AATT 1 cut(s) 138
TfiI GAWTC 2 cut(s) 54, 257
TspDTI ATGAA 2 cut(s) 158, 267
XapI RAATTY 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.