Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038902.1

Orthogroup ID

OG0014824

Physical Location & Seq

Genomic Coordinates Forward (+)

2256 .. 2953

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038902.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgatccgcaaagaactagaagatgtgttcattcctcttatacaagaacgaagcaagtcaaagcaggagaggctgagcaaggtggaccaaagtgatgaatttgtgctgtcgtatgttgatacattgcaggatctccagctccctgaagagaagagaaagcttggggaagaagaaatagttagcctttgttacgagattctcatggcaggagttgatactacatccactgcattgctctggatcatggccaacatagtcaagtgtcacccaccgatccactttctgttgccacactcggtcacacatgacattgttttcgctggtcatgtggtgcccaagaatgctatcgtcaatttcacagtggctgatatggggtgggatccaaaagtgtgggaagatcctatggctttcaagccggagagattcttgagtggtggtgcaggagaagggtttgatataacgggaagtagagagatcaagatgatgccttttggggcgggaaggagaatttgtcctgcttctggtttagctatgcttcatcttgagtattttgtcgccaatctggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00980 ko01100 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00980 map01100 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

189

Amino Acids

21.29

Weight (kDa)

5.24

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014824)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G296400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377721 RchiOBHm_Chr1g0377731 RchiOBHm_Chr7g0221591
rosa_multiflora	Rmu_sc0000084.1_g000042 Rmu_sc0005704.1_g000012 Rmu_sc0038902.1_g000003
rosa_roxburghii	Rroxscaffold_1G00044760 Rroxscaffold_3G00238270
rosa_rugosa	Rorug05G0152000
rosa_samantha	Rh1AG427900 Rh1BG381500 Rh1CG395400 Rh1DG412500 Rh2BG374100 Rh2DG390900 Rh5CG277000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	331
AciI	CCGC	2 cut(s)	7, 497
AclWI	GGATC	6 cut(s)	138, 248, 268, 374, 387, 392
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	2 cut(s)	98, 507
AcuI	CTGAAG	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	521
AgsI	TTSAA	1 cut(s)	412
AluBI	AGCT	3 cut(s)	139, 160, 530
AluI	AGCT	3 cut(s)	139, 160, 530
AlwI	GGATC	6 cut(s)	138, 248, 268, 374, 387, 392
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	1 cut(s)	246
ApoI	RAATTY	2 cut(s)	98, 507
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	336
BalI	TGGCCA	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	331
BfaI	CTAG	1 cut(s)	17
BlpI	GCTNAGC	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	333, 381
BmsI	GCATC	1 cut(s)	474
BpmI	CTGGAG	1 cut(s)	119
Bpu1102I	GCTNAGC	1 cut(s)	74
BpuEI	CTTGAG	2 cut(s)	448, 563
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	521
Bse3DI	GCAATG	2 cut(s)	122, 230
BseGI	GGATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	521
BseMI	GCAATG	2 cut(s)	122, 230
BseMII	CTCAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	336
BsgI	GTGCAG	1 cut(s)	459
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	331
BsiSI	CCGG	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	521
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	7 cut(s)	3, 130, 240, 273, 379, 397, 474
Bsp1720I	GCTNAGC	1 cut(s)	74
BspACI	CCGC	2 cut(s)	7, 497
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	2 cut(s)	333, 381
BspPI	GGATC	6 cut(s)	138, 248, 268, 374, 387, 392
BspT107I	GGYRCC	1 cut(s)	331
BsrDI	GCAATG	2 cut(s)	122, 230
BssMI	GATC	7 cut(s)	3, 130, 240, 273, 379, 397, 474
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	2 cut(s)	141, 146
BstDEI	CTNAG	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	221
BstKTI	GATC	7 cut(s)	6, 133, 243, 276, 382, 400, 477
BstMBI	GATC	7 cut(s)	3, 130, 240, 273, 379, 397, 474
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstSLI	GKGCMC	1 cut(s)	336
BstX2I	RGATCY	3 cut(s)	130, 379, 397
BstXI	CCANNNNNNTGG	1 cut(s)	390
BstYI	RGATCY	3 cut(s)	130, 379, 397
BsuRI	GGCC	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	221
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	225, 366
CaiI	CAGNNNCTG	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	85
CviAII	CATG	4 cut(s)	202, 244, 305, 326
CviJI	RGCY	9 cut(s)	73, 139, 160, 183, 248, 365, 407, 415, 530
CviKI_1	RGCY	9 cut(s)	73, 139, 160, 183, 248, 365, 407, 415, 530
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	7 cut(s)	5, 132, 242, 275, 381, 399, 476
DpnII	GATC	7 cut(s)	3, 130, 240, 273, 379, 397, 474
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	141, 146
EarI	CTCTTC	2 cut(s)	141, 146
Eco47I	GGWCC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	165
FaeI	CATG	4 cut(s)	205, 247, 308, 329
FatI	CATG	4 cut(s)	201, 243, 304, 325
FauI	CCCGC	1 cut(s)	490
FokI	GGATG	1 cut(s)	208
FspBI	CTAG	1 cut(s)	17
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	1 cut(s)	416
Hin1II	CATG	4 cut(s)	205, 247, 308, 329
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	2 cut(s)	196, 423
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188III	TCNNGA	4 cut(s)	238, 427, 478, 542
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	440, 495
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	3 cut(s)	127, 230, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	1 cut(s)	74
Hsp92II	CATG	4 cut(s)	205, 247, 308, 329
Kzo9I	GATC	7 cut(s)	3, 130, 240, 273, 379, 397, 474
LmnI	GCTCC	1 cut(s)	144
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	3 cut(s)	188, 263, 298
MalI	GATC	7 cut(s)	5, 132, 242, 275, 381, 399, 476
MboI	GATC	7 cut(s)	3, 130, 240, 273, 379, 397, 474
MboII	GAAGA	6 cut(s)	32, 158, 163, 179, 182, 407
MflI	RGATCY	3 cut(s)	130, 379, 397
MhlI	GDGCHC	1 cut(s)	336
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	3 cut(s)	98, 352, 507
MluNI	TGGCCA	1 cut(s)	248
MnlI	CCTC	2 cut(s)	45, 63
Mox20I	TGGCCA	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	248
Msp20I	TGGCCA	1 cut(s)	248
MspI	CCGG	1 cut(s)	416
Mva1269I	GAATGC	1 cut(s)	346
MwoI	GCNNNNNNNGC	1 cut(s)	70
NdeII	GATC	7 cut(s)	3, 130, 240, 273, 379, 397, 474
NlaIII	CATG	4 cut(s)	205, 247, 308, 329
NlaIV	GGNNCC	2 cut(s)	333, 381
NmuCI	GTSAC	2 cut(s)	263, 298
PctI	GAATGC	1 cut(s)	346
PfeI	GAWTC	2 cut(s)	196, 423
PspN4I	GGNNCC	2 cut(s)	333, 381
PspPI	GGNCC	1 cut(s)	85
PstNI	CAGNNNCTG	1 cut(s)	365
PsuI	RGATCY	3 cut(s)	130, 379, 397
Sau3AI	GATC	7 cut(s)	3, 130, 240, 273, 379, 397, 474
Sau96I	GGNCC	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	4 cut(s)	84, 141, 162, 532
SfaNI	GCATC	1 cut(s)	474
SinI	GGWCC	1 cut(s)	85
SmlI	CTYRAG	2 cut(s)	427, 542
SmoI	CTYRAG	2 cut(s)	427, 542
Sse9I	AATT	3 cut(s)	98, 352, 507
SsiI	CCGC	2 cut(s)	7, 497
SspMI	CTAG	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	361
TaqII	GACCGA	1 cut(s)	286
TasI	AATT	3 cut(s)	98, 352, 507
TfiI	GAWTC	2 cut(s)	196, 423
TscAI	CASTG	2 cut(s)	232, 366
TseFI	GTSAC	2 cut(s)	263, 298
Tsp45I	GTSAC	2 cut(s)	263, 298
TspDTI	ATGAA	3 cut(s)	19, 111, 527
TspRI	CASTG	2 cut(s)	232, 366
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	2 cut(s)	98, 507
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.