Rh1AG427900

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014824
Physical Location & Seq
Reverse (-)
65579157 .. 65579474
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG427900.1

Sequence Viewer

Length: 318 bp
ATGGGATGGGATCCAAAAGTGTGGGAAGACCCTATGGCTTTCAAGCCGGAGAGATTCTTGAGTGGTGGTGCAGGAGAAGGGTTTGATATAACGGGAAGTAGAGAGATCAAGATGATGCCTTTTGGGGAGGGAAGGAGAATTTGTCCTGCTTCTAGTTTAGCTATGCTTCATCTTGAGTATTTTGTGGCCAATCTGGTTTGGAGATTTGAATGGAAAGCTGTGAATGGAGACGATGTGGATCTGTCGGAGACGATGGAGTTTACTGTCCTTATGAAGAATCCATTGCAGGTCAATATATCAAAGAGAGTGAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00380 ko00830 ko00980 ko01100 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00980 map01100 map04913 map04917 map04927 map04934 map05204
Pfam Domains
Protein Families
p450

Protein Analysis

105

Amino Acids

12.0

Weight (kDa)

5.38

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 95 2.2e-19 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 277
AclWI GGATC 3 cut(s) 5, 18, 246
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 1 cut(s) 138
AgsI TTSAA 2 cut(s) 43, 209
AluBI AGCT 2 cut(s) 161, 218
AluI AGCT 2 cut(s) 161, 218
Alw26I GTCTC 2 cut(s) 222, 242
AlwI GGATC 3 cut(s) 5, 18, 246
AoxI GGCC 1 cut(s) 186
ApoI RAATTY 1 cut(s) 138
BalI TGGCCA 1 cut(s) 188
BamHI GGATCC 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 33
BccI CCATC 1 cut(s) 247
BcoDI GTCTC 2 cut(s) 222, 242
BfaI CTAG 1 cut(s) 153
BfuAI ACCTGC 1 cut(s) 277
BmiI GGNNCC 1 cut(s) 12
BmsI GCATC 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 33
BpuEI CTTGAG 2 cut(s) 79, 194
BsaBI GATNNNNATC 1 cut(s) 237
BsaXI ACNNNNNCTCC 4 cut(s) 127, 157, 219, 249
Bse3DI GCAATG 1 cut(s) 281
Bse8I GATNNNNATC 1 cut(s) 237
BseGI GGATG 1 cut(s) 11
BseJI GATNNNNATC 1 cut(s) 237
BseMI GCAATG 1 cut(s) 281
BsgI GTGCAG 1 cut(s) 90
BshFI GGCC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 47
BsmAI GTCTC 2 cut(s) 222, 242
BsmBI CGTCTC 2 cut(s) 222, 242
BsnI GGCC 1 cut(s) 188
Bsp143I GATC 3 cut(s) 10, 105, 238
BspANI GGCC 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 277
BspPI GGATC 3 cut(s) 5, 18, 246
BsrDI GCAATG 1 cut(s) 281
BssMI GATC 3 cut(s) 10, 105, 238
Bst4CI ACNGT 1 cut(s) 265
BstF5I GGATG 1 cut(s) 11
BstKTI GATC 3 cut(s) 13, 108, 241
BstMAI GTCTC 2 cut(s) 222, 242
BstMBI GATC 3 cut(s) 10, 105, 238
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 2 cut(s) 10, 238
BstXI CCANNNNNNTGG 1 cut(s) 21
BstYI RGATCY 2 cut(s) 10, 238
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 1 cut(s) 11
BveI ACCTGC 1 cut(s) 277
CviJI RGCY 5 cut(s) 38, 46, 161, 188, 218
CviKI_1 RGCY 5 cut(s) 38, 46, 161, 188, 218
DpnI GATC 3 cut(s) 12, 107, 240
DpnII GATC 3 cut(s) 10, 105, 238
EaeI YGGCCR 1 cut(s) 186
Esp3I CGTCTC 2 cut(s) 222, 242
FaiI YATR 5 cut(s) 35, 89, 164, 272, 296
FokI GGATG 1 cut(s) 18
FspBI CTAG 1 cut(s) 153
HaeIII GGCC 1 cut(s) 188
HapII CCGG 1 cut(s) 47
HinfI GANTC 2 cut(s) 54, 277
HpaII CCGG 1 cut(s) 47
Hpy166II GTNNAC 2 cut(s) 261, 310
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 3 cut(s) 58, 109, 173
Hpy8I GTNNAC 2 cut(s) 261, 310
HpyAV CCTTC 2 cut(s) 71, 126
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 71, 286
Kzo9I GATC 3 cut(s) 10, 105, 238
LpnPI CCDG 5 cut(s) 57, 60, 159, 179, 272
LweI GCATC 1 cut(s) 105
MaeI CTAG 1 cut(s) 153
MalI GATC 3 cut(s) 12, 107, 240
MboI GATC 3 cut(s) 10, 105, 238
MboII GAAGA 2 cut(s) 38, 286
MflI RGATCY 2 cut(s) 10, 238
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 1 cut(s) 138
MluNI TGGCCA 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 1 cut(s) 121
Mox20I TGGCCA 1 cut(s) 188
MscI TGGCCA 1 cut(s) 188
Msp20I TGGCCA 1 cut(s) 188
MspI CCGG 1 cut(s) 47
NdeII GATC 3 cut(s) 10, 105, 238
NlaIV GGNNCC 1 cut(s) 12
PfeI GAWTC 2 cut(s) 54, 277
PspN4I GGNNCC 1 cut(s) 12
PsuI RGATCY 2 cut(s) 10, 238
Sau3AI GATC 3 cut(s) 10, 105, 238
SetI ASST 3 cut(s) 163, 220, 291
SfaNI GCATC 1 cut(s) 105
SmlI CTYRAG 2 cut(s) 58, 173
SmoI CTYRAG 2 cut(s) 58, 173
Sse9I AATT 1 cut(s) 138
SspMI CTAG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 265
TasI AATT 1 cut(s) 138
TfiI GAWTC 2 cut(s) 54, 277
TspDTI ATGAA 2 cut(s) 158, 287
XapI RAATTY 1 cut(s) 138
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.