Rh2DG390900

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014824
Physical Location & Seq
Forward (+)
56634699 .. 56670132
35434 bp
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UTR
Exon/CDS
Intron
Rh2DG390900.1

Sequence Viewer

Length: 231 bp
ATGATGATACCGTTTGGGGCGGGTAGGAGAATTTGTCCGGGATTGGGTTTGTCAATGCTTCTTTTGGAGTATTTGGTGGCAAATCTGGTTTGGAAGTACGAGTGGGAAGCTGTGGATGGAGTTGGTGTTGATTTGACTGAGAGGCAAGAGACCACCTGGGTAATGAAGAATCCACTACAGGCTCATATATCTCCAAGGCTACCGTTGACAAGAGAGAGAGAATCGCACTAG

Protein Analysis

76

Amino Acids

8.72

Weight (kDa)

6.06

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 57 7.4e-09 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 20
AcsI RAATTY 1 cut(s) 30
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 44
AjnI CCWGG 1 cut(s) 155
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 30
AsuC2I CCSGG 1 cut(s) 39
BccI CCATC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 157
BcnI CCSGG 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 229
BfmI CTRYAG 1 cut(s) 176
Bme1390I CCNGG 2 cut(s) 39, 157
BmrFI CCNGG 2 cut(s) 39, 157
BpuMI CCSGG 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 156, 194
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 111, 141
Bsc4I CCNNNNNNNGG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 2 cut(s) 156, 194
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 129
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 143
BspACI CCGC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 156, 194
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 157
Bst4CI ACNGT 2 cut(s) 12, 204
BstDEI CTNAG 1 cut(s) 138
BstF5I GGATG 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 143
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 2 cut(s) 37, 155
BstSFI CTRYAG 1 cut(s) 176
BtsCI GGATG 1 cut(s) 121
Csp6I GTAC 1 cut(s) 97
CviJI RGCY 3 cut(s) 110, 182, 199
CviKI_1 RGCY 3 cut(s) 110, 182, 199
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 194
Eco31I GGTCTC 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaiI YATR 2 cut(s) 186, 188
FauI CCCGC 1 cut(s) 13
FokI GGATG 1 cut(s) 128
FspBI CTAG 1 cut(s) 229
HapII CCGG 1 cut(s) 38
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 2 cut(s) 169, 221
HpaII CCGG 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 207
Hpy8I GTNNAC 1 cut(s) 207
HpyCH4III ACNGT 2 cut(s) 12, 204
HpyF3I CTNAG 1 cut(s) 138
LpnPI CCDG 5 cut(s) 51, 71, 142, 164, 169
MaeI CTAG 1 cut(s) 229
MboII GAAGA 1 cut(s) 178
MluCI AATT 1 cut(s) 30
MnlI CCTC 1 cut(s) 135
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 2 cut(s) 39, 157
MvaI CCWGG 1 cut(s) 157
NciI CCSGG 1 cut(s) 39
PfeI GAWTC 2 cut(s) 169, 221
PfoI TCCNGGA 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
ScrFI CCNGG 2 cut(s) 39, 157
SetI ASST 2 cut(s) 112, 158
SfcI CTRYAG 1 cut(s) 176
Sse9I AATT 1 cut(s) 30
SsiI CCGC 1 cut(s) 20
SspMI CTAG 1 cut(s) 229
StyD4I CCNGG 2 cut(s) 37, 155
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 12, 204
TasI AATT 1 cut(s) 30
TfiI GAWTC 2 cut(s) 169, 221
TspDTI ATGAA 1 cut(s) 179
XapI RAATTY 1 cut(s) 30
XspI CTAG 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.