RchiOBHm_Chr0c32g0501631

methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0007363
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 726 bp
ATGGCTATTATTTGCAGCAACATTTCCCTTAGGCGTGTATTAACAACGCTCGTGCTTATGACAATCCTAGCGGCTGAGAAAAGGGTGTGCATCCGGATCCCAGATCAGATCACTGAAACTACAAGGCTAGGGATCCACCCAACGACCAGCCCGCCTTTGAAATCAGCAGTTTTTGCTCTGGGTAGCTTTTGGAGGTCTGAAGCTGTGTTCGGGTGCTTGAATGGGGTTCTTCAGACCACTGTTGGTTATGCTGGAGGATCCAAAGCCAATCCTGAGTACAGAAGTTTGGGTGATCATGCCGAGTCTGTGCAGGTGGTATATGATGAAAGGCTAATCAGCTTCAGGCAACTTTTGGAGGTTTTCTGGTCTAGTCATGATTATAGACAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAATACAGATCTATCGTTTTTACGAATGGAACTGGAGAGTCTAGATTGGCTTCTGTAAACAGAGGGAGAGAGCAAACTAAGTCAAAGAGCAGCATTGTCACTACTCAAATCCAGCCACTTGGAACATTTTATCCTGCTGAGCCTGAACATCAGGTACAACTCAAGATCCTATACCTTTCTGCCCAAACTATAGTCTTAAGGAGGGAATTTTCAGTCAGATCATTTATTCTAAACATTTCTTATAGCATCAGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGTTGGTTTCTTTTATTCCTGGTATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMSR

Protein Analysis

241

Amino Acids

26.6

Weight (kDa)

9.54

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMSR PF01625 56 - 191 5.5e-40 Peptide methionine sulfoxide reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 301
Acc36I ACCTGC 1 cut(s) 301
AccIII TCCGGA 1 cut(s) 93
AciI CCGC 3 cut(s) 71, 152, 695
AclWI GGATC 7 cut(s) 91, 104, 127, 140, 252, 265, 577
AcsI RAATTY 1 cut(s) 623
AcuI CTGAAG 3 cut(s) 215, 219, 325
AfaI GTAC 2 cut(s) 278, 573
AfiI CCNNNNNNNGG 1 cut(s) 410
AflII CTTAAG 1 cut(s) 613
AgsI TTSAA 2 cut(s) 160, 220
AjnI CCWGG 1 cut(s) 714
AloI GAACNNNNNNTCC 2 cut(s) 532, 564
AluBI AGCT 3 cut(s) 186, 203, 339
AluI AGCT 3 cut(s) 186, 203, 339
AlwI GGATC 7 cut(s) 91, 104, 127, 140, 252, 265, 577
Aor13HI TCCGGA 1 cut(s) 93
ApeKI GCWGC 2 cut(s) 15, 507
ApoI RAATTY 1 cut(s) 623
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 1 cut(s) 302
AvaII GGWCC 1 cut(s) 401
AxyI CCTNAGG 1 cut(s) 29
BamHI GGATCC 3 cut(s) 96, 132, 257
BauI CACGAG 1 cut(s) 50
BbvI GCAGC 2 cut(s) 27, 519
BciT130I CCWGG 1 cut(s) 716
BclI TGATCA 1 cut(s) 292
BfaI CTAG 4 cut(s) 68, 128, 369, 459
BfmI CTRYAG 1 cut(s) 606
BfrI CTTAAG 1 cut(s) 613
BfuAI ACCTGC 1 cut(s) 301
BglII AGATCT 1 cut(s) 425
BisI GCNGC 3 cut(s) 16, 72, 508
BlpI GCTNAGC 1 cut(s) 555
BlsI GCNGC 3 cut(s) 17, 73, 509
Bme1390I CCNGG 1 cut(s) 716
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 3 cut(s) 98, 134, 259
BmrFI CCNGG 1 cut(s) 716
BmsI GCATC 2 cut(s) 99, 672
BpmI CTGGAG 2 cut(s) 273, 471
Bpu1102I GCTNAGC 1 cut(s) 555
BpuEI CTTGAG 1 cut(s) 563
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse1I ACTGG 1 cut(s) 454
Bse21I CCTNAGG 1 cut(s) 29
BseAI TCCGGA 1 cut(s) 93
BseBI CCWGG 1 cut(s) 716
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 410
BseMII CTCAG 3 cut(s) 66, 264, 546
BseNI ACTGG 1 cut(s) 454
BseXI GCAGC 2 cut(s) 27, 519
BsgI GTGCAG 1 cut(s) 329
BsiSI CCGG 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 410
Bsp13I TCCGGA 1 cut(s) 93
Bsp143I GATC 9 cut(s) 96, 103, 108, 132, 257, 292, 425, 582, 635
Bsp1720I GCTNAGC 1 cut(s) 555
BspACI CCGC 3 cut(s) 71, 152, 695
BspCNI CTCAG 3 cut(s) 67, 265, 547
BspEI TCCGGA 1 cut(s) 93
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 3 cut(s) 98, 134, 259
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 7 cut(s) 91, 104, 127, 140, 252, 265, 577
BspTI CTTAAG 1 cut(s) 613
BsrI ACTGG 1 cut(s) 454
BssMI GATC 9 cut(s) 96, 103, 108, 132, 257, 292, 425, 582, 635
BssSI CACGAG 1 cut(s) 50
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 716
Bst4CI ACNGT 1 cut(s) 241
BstAFI CTTAAG 1 cut(s) 613
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 5 cut(s) 29, 75, 273, 495, 555
BstEII GGTNACC 1 cut(s) 413
BstF5I GGATG 1 cut(s) 90
BstKTI GATC 9 cut(s) 99, 106, 111, 135, 260, 295, 428, 585, 638
BstMBI GATC 9 cut(s) 96, 103, 108, 132, 257, 292, 425, 582, 635
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 1 cut(s) 716
BstPI GGTNACC 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 714
BstSFI CTRYAG 1 cut(s) 606
BstV1I GCAGC 2 cut(s) 27, 519
BstX2I RGATCY 5 cut(s) 96, 132, 257, 425, 582
BstXI CCANNNNNNTGG 1 cut(s) 536
BstYI RGATCY 5 cut(s) 96, 132, 257, 425, 582
Bsu36I CCTNAGG 1 cut(s) 29
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 2 cut(s) 111, 237
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 152
CciI TCATGA 1 cut(s) 373
Cfr13I GGNCC 1 cut(s) 401
Csp6I GTAC 2 cut(s) 277, 572
CviAII CATG 2 cut(s) 296, 374
CviQI GTAC 2 cut(s) 277, 572
DdeI CTNAG 5 cut(s) 29, 75, 273, 495, 555
DpnI GATC 9 cut(s) 98, 105, 110, 134, 259, 294, 427, 584, 637
DpnII GATC 9 cut(s) 96, 103, 108, 132, 257, 292, 425, 582, 635
Eco47I GGWCC 1 cut(s) 401
Eco57I CTGAAG 3 cut(s) 215, 219, 325
Eco81I CCTNAGG 1 cut(s) 29
Eco91I GGTNACC 1 cut(s) 413
EcoO109I RGGNCCY 1 cut(s) 401
EcoO65I GGTNACC 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 714
FaeI CATG 2 cut(s) 299, 377
FatI CATG 2 cut(s) 295, 373
FauI CCCGC 2 cut(s) 159, 688
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 16, 72, 508
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 3 cut(s) 16, 72, 508
FspBI CTAG 4 cut(s) 68, 128, 369, 459
GluI GCNGC 3 cut(s) 16, 72, 508
GsuI CTGGAG 2 cut(s) 273, 471
HapII CCGG 1 cut(s) 94
Hin1II CATG 2 cut(s) 299, 377
HinfI GANTC 2 cut(s) 302, 455
HpaII CCGG 1 cut(s) 94
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 4 cut(s) 108, 199, 234, 635
Hpy188III TCNNGA 6 cut(s) 94, 272, 374, 404, 459, 580
Hpy8I GTNNAC 1 cut(s) 475
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 3 cut(s) 15, 90, 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 5 cut(s) 29, 75, 273, 495, 555
Hsp92II CATG 2 cut(s) 299, 377
Kpn2I TCCGGA 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 9 cut(s) 96, 103, 108, 132, 257, 292, 425, 582, 635
Lsp1109I GCAGC 2 cut(s) 27, 519
LweI GCATC 2 cut(s) 99, 672
MaeI CTAG 4 cut(s) 68, 128, 369, 459
MaeIII GTNAC 2 cut(s) 413, 514
MalI GATC 9 cut(s) 98, 105, 110, 134, 259, 294, 427, 584, 637
MboI GATC 9 cut(s) 96, 103, 108, 132, 257, 292, 425, 582, 635
MboII GAAGA 1 cut(s) 221
MflI RGATCY 5 cut(s) 96, 132, 257, 425, 582
MluCI AATT 1 cut(s) 623
MlyI GAGTC 2 cut(s) 311, 464
MnlI CCTC 5 cut(s) 186, 248, 349, 473, 612
MroI TCCGGA 1 cut(s) 93
MseI TTAA 2 cut(s) 41, 614
MspCI CTTAAG 1 cut(s) 613
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 1 cut(s) 716
MvaI CCWGG 1 cut(s) 716
MwoI GCNNNNNNNGC 1 cut(s) 173
NdeII GATC 9 cut(s) 96, 103, 108, 132, 257, 292, 425, 582, 635
NlaIII CATG 2 cut(s) 299, 377
NlaIV GGNNCC 3 cut(s) 98, 134, 259
NmeAIII GCCGAG 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 514
PagI TCATGA 1 cut(s) 373
PaqCI CACCTGC 1 cut(s) 301
PkrI GCNGC 3 cut(s) 17, 73, 509
PleI GAGTC 2 cut(s) 310, 463
PpsI GAGTC 2 cut(s) 310, 463
PpuMI RGGWCCY 1 cut(s) 401
Psp5II RGGWCCY 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 714
PspEI GGTNACC 1 cut(s) 413
PspGI CCWGG 1 cut(s) 714
PspN4I GGNNCC 3 cut(s) 98, 134, 259
PspPI GGNCC 1 cut(s) 401
PspPPI RGGWCCY 1 cut(s) 401
PsrI GAACNNNNNNTAC 2 cut(s) 555, 587
PsuI RGATCY 5 cut(s) 96, 132, 257, 425, 582
RsaI GTAC 2 cut(s) 278, 573
RsaNI GTAC 2 cut(s) 277, 572
SaqAI TTAA 2 cut(s) 41, 614
SatI GCNGC 3 cut(s) 16, 72, 508
Sau3AI GATC 9 cut(s) 96, 103, 108, 132, 257, 292, 425, 582, 635
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 2 cut(s) 311, 464
ScrFI CCNGG 1 cut(s) 716
SetI ASST 9 cut(s) 188, 197, 205, 315, 341, 360, 403, 573, 594
SfaNI GCATC 2 cut(s) 99, 672
SfcI CTRYAG 1 cut(s) 606
SinI GGWCC 1 cut(s) 401
SmlI CTYRAG 2 cut(s) 578, 613
SmoI CTYRAG 2 cut(s) 578, 613
Sse9I AATT 1 cut(s) 623
SsiI CCGC 3 cut(s) 71, 152, 695
SspMI CTAG 4 cut(s) 68, 128, 369, 459
StyD4I CCNGG 1 cut(s) 714
TaaI ACNGT 1 cut(s) 241
TasI AATT 1 cut(s) 623
TatI WGTACW 1 cut(s) 276
TauI GCSGC 1 cut(s) 74
Tru1I TTAA 2 cut(s) 41, 614
Tru9I TTAA 2 cut(s) 41, 614
TscAI CASTG 2 cut(s) 118, 244
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 2 cut(s) 15, 507
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 1 cut(s) 339
TspRI CASTG 2 cut(s) 118, 244
Vha464I CTTAAG 1 cut(s) 613
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 1 cut(s) 623
XbaI TCTAGA 1 cut(s) 458
XspI CTAG 4 cut(s) 68, 128, 369, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.