Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0003952

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAGCCCACCTGATTCGCCAATACTGTCACCAATCAAGGTAGACTTGAAGCAAGGGCAGGGCAATGAAGCTTCAATACTAAATGATCAAGTATTTGGTGGAGTAGAAACCCTCCCTCAACACAAAATGGTTACAAAGGATGTGAAGTTCAGAGTTGTCAATAGTGAGGAGTCAAAGCCATCAAAGGTTACTGAGGTGAAACCAGCCAAGCATGTGGAATTGAAACTAAGAAAAGAAGAGGAGTTGAAACCAGCAAAGGCTGTGGAATTGAAATTACCAAAATATGAGGAGGTAAAAGCAATAAATGATGTGGAGTCAAGGCCAACATATGCTACGGACATGGAACCAGCCAGAGATGTGGAGTTAGAACCAGTTGATGTGGTGGAATTGGAACCAGCAAAAGATATGGAGTTGAAACCATCAGAGGATTTGCTTTTGAAACTAGCAAAAGAGCAGGAGGCTGATAAAGCACAGGTTGTGGAAAATTTGAAGTTAGTTAAAGATATTGAGGAGATGAAATCAAAGCTACTTGAACTTGAACTAAAGCTGAGCCAGGTTTGGTCTTTTCTGAATTTTTTTTTTTTCCAAATTTTCAATTGCGTGTACAAACCGACTCTAGCAGTATTTCTCTGCATAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

213

Amino Acids

24.25

Weight (kDa)

5.08

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180 FvH4_6g04180
malus_domestica	MD00G1052100.v1.1 MD12G1230200.v1.1
prunus_persica	Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335400_v2.0.a1 Prupe.6G335500_v2.0.a1
pyrus_communis	pycom04g19010 pycom12g21400
rosa_chinensis	RchiOBHm_Chr0c30g0501241 RchiOBHm_Chr0c30g0501251 RchiOBHm_Chr3g0452761 RchiOBHm_Chr3g0452781
rosa_laevigata	RLG00000025570
rosa_multiflora	Rmu_ssc0000156.1_g000002
rosa_roxburghii	Rroxscaffold_6G00429760
rosa_rugosa	Rorug02G0643000
rosa_samantha	Rh3AG045200 Rh3BG047700 Rh3CG046200 Rh3DG046500
rosa_wichuraiana	Rw3G003560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	42
AcsI	RAATTY	3 cut(s)	484, 571, 588
AfaI	GTAC	1 cut(s)	605
AjnI	CCWGG	1 cut(s)	552
AloI	GAACNNNNNNTCC	2 cut(s)	131, 163
AluBI	AGCT	3 cut(s)	71, 526, 547
AluI	AGCT	3 cut(s)	71, 526, 547
AoxI	GGCC	1 cut(s)	320
ApoI	RAATTY	3 cut(s)	484, 571, 588
AsuHPI	GGTGA	2 cut(s)	21, 208
BanII	GRGCYC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	60, 92
BccI	CCATC	2 cut(s)	187, 427
BciT130I	CCWGG	1 cut(s)	554
BclI	TGATCA	1 cut(s)	85
BfaI	CTAG	2 cut(s)	443, 617
BlpI	GCTNAGC	1 cut(s)	548
Bme1390I	CCNGG	1 cut(s)	554
BmiI	GGNNCC	2 cut(s)	345, 393
BmrFI	CCNGG	1 cut(s)	554
Bpu1102I	GCTNAGC	1 cut(s)	548
Bse1I	ACTGG	1 cut(s)	371
Bse3DI	GCAATG	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	554
BseGI	GGATG	1 cut(s)	145
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	2 cut(s)	183, 539
BseNI	ACTGG	1 cut(s)	371
BseRI	GAGGAG	4 cut(s)	182, 254, 302, 524
BshFI	GGCC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	1 cut(s)	85
Bsp1720I	GCTNAGC	1 cut(s)	548
BspANI	GGCC	1 cut(s)	322
BspCNI	CTCAG	2 cut(s)	184, 540
BspLI	GGNNCC	2 cut(s)	345, 393
BsrDI	GCAATG	1 cut(s)	70
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	371
BssMI	GATC	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	554
Bst4CI	ACNGT	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	231
BstAUI	TGTACA	1 cut(s)	603
BstDEI	CTNAG	3 cut(s)	192, 227, 548
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstNI	CCWGG	1 cut(s)	554
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	552
BstXI	CCANNNNNNTGG	2 cut(s)	214, 358
BsuRI	GGCC	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	604
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	2 cut(s)	212, 340
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	3 cut(s)	192, 227, 548
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	552
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	2 cut(s)	215, 343
FaiI	YATR	8 cut(s)	213, 285, 328, 330, 341, 407, 635, 640
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FatI	CATG	2 cut(s)	211, 339
FauNDI	CATATG	1 cut(s)	328
FbaI	TGATCA	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	42
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	8
FspBI	CTAG	2 cut(s)	443, 617
HaeIII	GGCC	1 cut(s)	322
Hin1II	CATG	2 cut(s)	215, 343
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	4 cut(s)	14, 170, 314, 613
HphI	GGTGA	2 cut(s)	21, 208
Hpy166II	GTNNAC	2 cut(s)	43, 604
Hpy188I	TCNGA	3 cut(s)	152, 424, 570
Hpy8I	GTNNAC	2 cut(s)	43, 604
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	633
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	3 cut(s)	192, 227, 548
Hsp92II	CATG	2 cut(s)	215, 343
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	85
MaeI	CTAG	2 cut(s)	443, 617
MaeIII	GTNAC	3 cut(s)	27, 130, 187
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	1 cut(s)	248
MfeI	CAATTG	1 cut(s)	595
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	8 cut(s)	218, 266, 272, 386, 484, 571, 588, 595
MlyI	GAGTC	3 cut(s)	179, 323, 607
MseI	TTAA	1 cut(s)	498
MspR9I	CCNGG	1 cut(s)	554
MunI	CAATTG	1 cut(s)	595
MvaI	CCWGG	1 cut(s)	554
MwoI	GCNNNNNNNGC	1 cut(s)	467
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	2 cut(s)	215, 343
NlaIV	GGNNCC	2 cut(s)	345, 393
NmuCI	GTSAC	1 cut(s)	27
NspI	RCATGY	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	14
PleI	GAGTC	3 cut(s)	178, 322, 607
PpsI	GAGTC	3 cut(s)	178, 322, 607
Psp6I	CCWGG	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	552
PspN4I	GGNNCC	2 cut(s)	345, 393
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
SaqAI	TTAA	1 cut(s)	498
Sau3AI	GATC	1 cut(s)	85
SchI	GAGTC	3 cut(s)	179, 323, 607
ScrFI	CCNGG	1 cut(s)	554
SduI	GDGCHC	1 cut(s)	8
Sse9I	AATT	8 cut(s)	218, 266, 272, 386, 484, 571, 588, 595
SspMI	CTAG	2 cut(s)	443, 617
StyD4I	CCNGG	1 cut(s)	552
TaaI	ACNGT	1 cut(s)	27
TasI	AATT	8 cut(s)	218, 266, 272, 386, 484, 571, 588, 595
TatI	WGTACW	1 cut(s)	603
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	27
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	2 cut(s)	81, 530
TspGWI	ACGGA	1 cut(s)	350
XapI	RAATTY	3 cut(s)	484, 571, 588
XceI	RCATGY	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	2 cut(s)	443, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.