Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0011110

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGCAAGCGCTCCTTCTCCTCCGTCGTCGTTGAAGGCAAACATGGCAGCAGGAGACCCCAAATTCGATCTCGTGAAGCAGATTGGCAGCCACGAGGTTACAATAGCAGAGCTCAATGCTCTTTCATCGTCCCGGACGGTGTATCAGAAGAATGGGAGCTTATTTTTCCATACGACAATCCAGAAAGCATCGGCATCTGAACAGAGTAGAAATTTTTCTATCAACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

76

Amino Acids

8.16

Weight (kDa)

9.3

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49245
fragaria_vesca	FvH4_7g07270 FvH4_7g07270 FvH4_7g07330 FvH4_7g07330
malus_domestica	MD07G1078800.v1.1
pyrus_communis	pycom07g06240
rosa_chinensis	RchiOBHm_Chr0c29g0501081 RchiOBHm_Chr0c29g0501131 RchiOBHm_Chr1g0337851
rosa_laevigata	RLG00000029271
rosa_multiflora	Rmu_co8518295.1_g000001 Rmu_sc0011565.1_g000006
rosa_roxburghii	Rroxscaffold_4G00314300
rosa_samantha	Rh1AG154600 Rh1BG123500 Rh1CG145200 Rh1DG162500
rosa_wichuraiana	Rw1G012650 Rw1G012670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	62, 211
AfeI	AGCGCT	1 cut(s)	10
AgsI	TTSAA	1 cut(s)	34
AluBI	AGCT	2 cut(s)	112, 159
AluI	AGCT	2 cut(s)	112, 159
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	48
Aor51HI	AGCGCT	1 cut(s)	10
ApeKI	GCWGC	2 cut(s)	47, 87
ApoI	RAATTY	2 cut(s)	62, 211
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
Asp700I	GAANNNNTTC	1 cut(s)	214
AspLEI	GCGC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	114
BauI	CACGAG	2 cut(s)	71, 92
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	59, 99
BcnI	CCSGG	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	12
BisI	GCNGC	2 cut(s)	48, 88
BlsI	GCNGC	2 cut(s)	49, 89
Bme1390I	CCNGG	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	133
BmsI	GCATC	2 cut(s)	197, 203
BpuMI	CCSGG	1 cut(s)	133
BsaI	GGTCTC	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	2 cut(s)	59, 99
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	115
Bso31I	GGTCTC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	48
BssMI	GATC	1 cut(s)	67
BssSI	CACGAG	2 cut(s)	71, 92
Bst2BI	CACGAG	2 cut(s)	71, 92
Bst4CI	ACNGT	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	59, 99
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	11
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	3 cut(s)	90, 112, 159
CviKI_1	RGCY	3 cut(s)	90, 112, 159
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	48
Eco47III	AGCGCT	1 cut(s)	10
Eco53kI	GAGCTC	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	1 cut(s)	46
FaiI	YATR	2 cut(s)	44, 171
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	2 cut(s)	48, 88
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	48, 88
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	2 cut(s)	48, 88
HaeII	RGCGCY	1 cut(s)	12
HapII	CCGG	1 cut(s)	133
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	46
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	147, 199
Hpy188III	TCNNGA	2 cut(s)	73, 181
Hpy99I	CGWCG	2 cut(s)	28, 31
HpyAV	CCTTC	2 cut(s)	24, 28
HpyCH4III	ACNGT	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	46
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	67
LmnI	GCTCC	2 cut(s)	16, 156
LpnPI	CCDG	3 cut(s)	36, 146, 194
Lsp1109I	GCAGC	2 cut(s)	59, 99
LweI	GCATC	2 cut(s)	197, 203
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	62, 211
MnlI	CCTC	2 cut(s)	30, 88
MroXI	GAANNNNTTC	1 cut(s)	214
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	1 cut(s)	44
NciI	CCSGG	1 cut(s)	133
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	214
PfoI	TCCNGGA	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	49, 89
Psp124BI	GAGCTC	1 cut(s)	114
SacI	GAGCTC	1 cut(s)	114
SatI	GCNGC	2 cut(s)	48, 88
Sau3AI	GATC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	3 cut(s)	99, 114, 161
SfaNI	GCATC	2 cut(s)	197, 203
Sse9I	AATT	2 cut(s)	62, 211
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	66
TasI	AATT	2 cut(s)	62, 211
TseI	GCWGC	2 cut(s)	47, 87
TspDTI	ATGAA	1 cut(s)	114
TspGWI	ACGGA	1 cut(s)	12
XapI	RAATTY	2 cut(s)	62, 211
XmnI	GAANNNNTTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.