Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015735

Physical Location & Seq

Genomic Coordinates Forward (+)

12283013 .. 12283189

Gene Structure 177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55437

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGAACAGCCCTTGGAGGGACAGACCAATTAAAGAGTCGATGAAGCTTTTTGAGGATATGAGGCGTGGCCTGATTGAAGAAGGGAAAGCAACTGTAAGAATGAAACAAGACATGCAGAGTGATAATTTTAACATGTATGACCTTATTGCATATCGTATCAAGTTTATGTTGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00970 ko01100 map00970 map01100

Pfam Domains

Protein Families

tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

58

Amino Acids

7.05

Weight (kDa)

9.22

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	2 - 55	1.5e-12	tRNA synthetases class I (E and Q), catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015735)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0324531 RchiOBHm_Chr6g0267551
rosa_multiflora	Rmu_sc0003124.1_g000008
rosa_roxburghii	Rroxscaffold_1G00046170 Rroxscaffold_4G00325430 Rroxscaffold_5G00351520
rosa_rugosa	Rorug06G0033600
rosa_samantha	Rh2CG569800 Rh6AG155300 Rh6AG155400 Rh6BG156200 Rh6BG156300 Rh6CG152000 Rh6DG141400 Rh6DG141500
rosa_wichuraiana	Rw6G036060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	77
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
AoxI	GGCC	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	16
BshFI	GGCC	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	94
BstNSI	RCATGY	2 cut(s)	115, 136
BsuRI	GGCC	1 cut(s)	69
CviAII	CATG	2 cut(s)	112, 133
CviJI	RGCY	3 cut(s)	9, 46, 69
CviKI_1	RGCY	3 cut(s)	9, 46, 69
Eco130I	CCWWGG	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	2 cut(s)	115, 136
FaiI	YATR	6 cut(s)	59, 113, 134, 138, 151, 167
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	2 cut(s)	111, 132
HaeIII	GGCC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	115, 136
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	115, 149
Hsp92II	CATG	2 cut(s)	115, 136
LpnPI	CCDG	1 cut(s)	83
MboII	GAAGA	1 cut(s)	89
MluCI	AATT	2 cut(s)	27, 124
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	3 cut(s)	9, 46, 54
MseI	TTAA	2 cut(s)	30, 129
NlaIII	CATG	2 cut(s)	115, 136
NspI	RCATGY	2 cut(s)	115, 136
PciI	ACATGT	1 cut(s)	132
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PscI	ACATGT	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	30, 129
SchI	GAGTC	1 cut(s)	44
SetI	ASST	2 cut(s)	48, 144
SgeI	CNNG	7 cut(s)	24, 77, 82, 119, 124, 145, 172
Sse9I	AATT	2 cut(s)	27, 124
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	94
TaqI	TCGA	1 cut(s)	38
TasI	AATT	2 cut(s)	27, 124
Tru1I	TTAA	2 cut(s)	30, 129
Tru9I	TTAA	2 cut(s)	30, 129
TspDTI	ATGAA	3 cut(s)	17, 56, 116
XceI	RCATGY	2 cut(s)	115, 136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.