Rh6AG155300

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0015735
Physical Location & Seq
Forward (+)
24198161 .. 24199366
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG155300.1

Sequence Viewer

Length: 504 bp
ATGAGCGGACGGCCAAACACACAATCGCCAACAACAACGTCACCGCCGTCATTCACGAGGCTGCAGTTACTCATGGATGCAGTCGAAGCATTGGTAATCAATCTTCTATACACGGTTGCTAAAAAGTTTCCAGCAAATGCCCTTGTGCATCGCCCCGTATTGGCACACTACATTGTGTCTTCAAAGATTAAATTCCCAGCTCAGTTAGATGCGGCTTTGTCATTTTTTGCAAGTACGGGGCCAGAAAAATTCAAAACAAGTGAATTTGAAGAAGCATGTGGTGTGTTGAAGTTTCAGAGGAAGAAATCAAGCAATCTGTTAAATGAGGTTTTTGAAGAGAATAAGTCTGCAATTTTGGAGCAGCGCTATAAAACAAATGCGGGTGACTTATTTGCACATCTTAGGAAGAGACATCCGTGGGCTGACCCAGAAGTTGTCAAGGCAATCTTATTTTACTCTTTTGAATGTATAGTTGAATATATACATATTCGTTTTTACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

167

Amino Acids

19.04

Weight (kDa)

9.34

Isoelectric Point (pI)

56.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_synt_1c_R1 PF04558 32 - 143 1.8e-27 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 4 cut(s) 6, 44, 212, 380
AcoI YGGCCR 1 cut(s) 11
AcsI RAATTY 3 cut(s) 191, 248, 263
AfaI GTAC 1 cut(s) 235
AfeI AGCGCT 1 cut(s) 365
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 7 cut(s) 183, 253, 269, 289, 335, 464, 476
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 403
Aor51HI AGCGCT 1 cut(s) 365
AoxI GGCC 2 cut(s) 11, 239
ApeKI GCWGC 2 cut(s) 61, 361
ApoI RAATTY 3 cut(s) 191, 248, 263
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 2 cut(s) 33, 395
BarI GAAGNNNNNNTAC 2 cut(s) 87, 119
BauI CACGAG 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 48, 373
BceAI ACGGC 2 cut(s) 26, 31
BcoDI GTCTC 1 cut(s) 403
BfmI CTRYAG 1 cut(s) 62
BfoI RGCGCY 1 cut(s) 367
BisI GCNGC 3 cut(s) 62, 213, 362
BlsI GCNGC 3 cut(s) 63, 214, 363
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 240
BmsI GCATC 3 cut(s) 67, 157, 199
BpiI GAAGAC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 416
Bsc4I CCNNNNNNNGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 416
BseGI GGATG 2 cut(s) 82, 412
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 48, 373
BseYI CCCAGC 1 cut(s) 196
BshFI GGCC 2 cut(s) 13, 241
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 403
BsnI GGCC 2 cut(s) 13, 241
BspACI CCGC 4 cut(s) 6, 44, 212, 380
BspANI GGCC 2 cut(s) 13, 241
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 240
BspMAI CTGCAG 1 cut(s) 66
BsrBI CCGCTC 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 416
BssSI CACGAG 1 cut(s) 55
Bst2BI CACGAG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 2 cut(s) 330, 401
BstDEI CTNAG 2 cut(s) 201, 401
BstDSI CCRYGG 1 cut(s) 416
BstF5I GGATG 2 cut(s) 82, 412
BstH2I RGCGCY 1 cut(s) 367
BstHHI GCGC 1 cut(s) 366
BstMAI GTCTC 1 cut(s) 403
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 279
BstSFI CTRYAG 1 cut(s) 62
BstV1I GCAGC 2 cut(s) 48, 373
BstV2I GAAGAC 1 cut(s) 171
BsuRI GGCC 2 cut(s) 13, 241
BtgI CCRYGG 1 cut(s) 416
BtgZI GCGATG 1 cut(s) 134
BtsCI GGATG 2 cut(s) 82, 412
CfoI GCGC 1 cut(s) 366
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 234
CviAII CATG 2 cut(s) 73, 276
CviJI RGCY 6 cut(s) 13, 61, 200, 215, 241, 422
CviKI_1 RGCY 6 cut(s) 13, 61, 200, 215, 241, 422
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 2 cut(s) 201, 401
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 2 cut(s) 330, 401
EarI CTCTTC 2 cut(s) 330, 401
Eco47III AGCGCT 1 cut(s) 365
FaeI CATG 2 cut(s) 76, 279
FaiI YATR 8 cut(s) 74, 109, 277, 369, 470, 480, 482, 486
FalI AAGNNNNNCTT 2 cut(s) 431, 463
FatI CATG 2 cut(s) 72, 275
FauI CCCGC 1 cut(s) 373
Fnu4HI GCNGC 3 cut(s) 62, 213, 362
FokI GGATG 2 cut(s) 89, 399
Fsp4HI GCNGC 3 cut(s) 62, 213, 362
GlaI GCGC 1 cut(s) 365
GluI GCNGC 3 cut(s) 62, 213, 362
GsaI CCCAGC 1 cut(s) 200
HaeII RGCGCY 1 cut(s) 367
HaeIII GGCC 2 cut(s) 13, 241
HhaI GCGC 1 cut(s) 366
Hin1II CATG 2 cut(s) 76, 279
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HphI GGTGA 2 cut(s) 33, 395
Hpy188I TCNGA 1 cut(s) 297
Hpy188III TCNNGA 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 6 cut(s) 64, 80, 148, 230, 350, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 201, 401
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 2 cut(s) 76, 279
HspAI GCGC 1 cut(s) 364
LmnI GCTCC 1 cut(s) 358
LpnPI CCDG 4 cut(s) 144, 210, 255, 441
Lsp1109I GCAGC 2 cut(s) 48, 373
LweI GCATC 3 cut(s) 67, 157, 199
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 3 cut(s) 39, 66, 383
MbiI CCGCTC 1 cut(s) 6
MboII GAAGA 6 cut(s) 95, 171, 281, 313, 347, 418
MluCI AATT 4 cut(s) 191, 248, 263, 351
MnlI CCTC 3 cut(s) 51, 291, 319
MseI TTAA 2 cut(s) 189, 320
MwoI GCNNNNNNNGC 1 cut(s) 86
NlaIII CATG 2 cut(s) 76, 279
NlaIV GGNNCC 1 cut(s) 240
NmuCI GTSAC 2 cut(s) 39, 383
NspI RCATGY 1 cut(s) 279
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PkrI GCNGC 3 cut(s) 63, 214, 363
PspFI CCCAGC 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 1 cut(s) 239
PstI CTGCAG 1 cut(s) 66
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SaqAI TTAA 2 cut(s) 189, 320
SatI GCNGC 3 cut(s) 62, 213, 362
Sau96I GGNCC 1 cut(s) 239
SetI ASST 3 cut(s) 41, 202, 330
SfaNI GCATC 3 cut(s) 67, 157, 199
SfcI CTRYAG 1 cut(s) 62
Sse9I AATT 4 cut(s) 191, 248, 263, 351
SsiI CCGC 4 cut(s) 6, 44, 212, 380
TaaI ACNGT 1 cut(s) 115
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 84
TasI AATT 4 cut(s) 191, 248, 263, 351
TauI GCSGC 1 cut(s) 215
Tru1I TTAA 2 cut(s) 189, 320
Tru9I TTAA 2 cut(s) 189, 320
TseFI GTSAC 2 cut(s) 39, 383
TseI GCWGC 2 cut(s) 61, 361
Tsp45I GTSAC 2 cut(s) 39, 383
TspGWI ACGGA 1 cut(s) 405
XapI RAATTY 3 cut(s) 191, 248, 263
XceI RCATGY 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.