Rh6CG152000

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0015735
Physical Location & Seq
Forward (+)
19810673 .. 19813542
2870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG152000.1

Sequence Viewer

Length: 816 bp
ATGCCGGCCAAGGCCTCCGAGAAGGAGAAGAATAACCTTGAGCTCTTCTTGAAGGTCGACGGACTGGATGAGCGGACGGCCAAACACATGCACAATCGCCAACAACAACGTCACCGCTGTCATTCACGAGTAGAAGCATTGGTAATCAATCTTCTATACACGGTTGCTAAAAAGTTTCCAGCAAATGCCCTTGTGCATCGCCCCGTATTGGCACACTACATTGTGTCTTCAAAGATTAAATTCCCAGCTCAGTTAGATGCGGCTTTGTCATTTTTTGCAAGTACGGGGCCAGAAAAATTCAAAACAAGTGAATTTGAAGAAGCATGTGGTTTGTTGAAGTTTCAGAGGAAGAAATCAAGCAATCTGTTAAATGAGGTTTTTGAAGAGAATAAGTCTGCAATTTTGGAGCAGCCCTATAAAACAAATGCGGGTGACTTATTTGCACATCTTAGGAAGAGACATCCGTGGGCTGACCCAGAAGTTCCAGTTGAAGAAATTCTTAATCCATATGCGATATTCCCTCAACCAGAGGAAAACTTGAAGGTTCATACTTCAGTTTTCTTTAGTGATGGTTCTATTCTAAGATGCCATGCCAAGGCAATGTTTATTGACTTTGGCCTGGCAAAAGAGAGAGGTGGTGGCTGCTATCTGAGGTTTGATGACACAAATCACGAAGCTGAAAAGAAGGAATATATTGATCATATTCAGGAAATTGTCAATTGGATGGGTTGGGAGCCCTACAAGACGGGGGATGAGATAAAGGAGTACAGGGAGAAAAAAATGAACAGCCCTTGGAGGAACAGGCCAATTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

271

Amino Acids

31.47

Weight (kDa)

8.71

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_synt_1c_R1 PF04558 43 - 159 7.6e-25 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
tRNA-synt_1c PF00749 197 - 257 1.6e-15 tRNA synthetases class I (E and Q), catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 73
AccI GTMKAC 1 cut(s) 57
AciI CCGC 4 cut(s) 73, 115, 260, 428
AcoI YGGCCR 2 cut(s) 6, 78
AcsI RAATTY 4 cut(s) 239, 296, 311, 495
AcuI CTGAAG 1 cut(s) 537
AfaI GTAC 2 cut(s) 283, 767
AfiI CCNNNNNNNGG 2 cut(s) 208, 595
AgsI TTSAA 8 cut(s) 52, 231, 301, 317, 337, 383, 491, 541
AjnI CCWGG 1 cut(s) 618
AluBI AGCT 3 cut(s) 43, 248, 677
AluI AGCT 3 cut(s) 43, 248, 677
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 451
AoxI GGCC 6 cut(s) 6, 12, 78, 287, 616, 803
ApeKI GCWGC 2 cut(s) 409, 642
ApoI RAATTY 4 cut(s) 239, 296, 311, 495
Asp700I GAANNNNTTC 1 cut(s) 495
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 104, 443
BanII GRGCYC 2 cut(s) 45, 738
BarI GAAGNNNNNNTAC 2 cut(s) 135, 167
BauI CACGAG 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 2 cut(s) 421, 629
BccI CCATC 2 cut(s) 563, 718
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 620
BclI TGATCA 1 cut(s) 697
BcoDI GTCTC 1 cut(s) 451
BisI GCNGC 3 cut(s) 261, 410, 643
BlsI GCNGC 3 cut(s) 262, 411, 644
Bme1390I CCNGG 1 cut(s) 620
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 2 cut(s) 288, 735
BmrFI CCNGG 1 cut(s) 620
BmsI GCATC 3 cut(s) 205, 247, 575
BpiI GAAGAC 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 59
BsaJI CCNNGG 4 cut(s) 9, 464, 594, 791
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 595
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 2 cut(s) 69, 485
Bse3DI GCAATG 1 cut(s) 606
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 4 cut(s) 9, 464, 594, 791
BseGI GGATG 4 cut(s) 73, 460, 729, 757
BseLI CCNNNNNNNGG 2 cut(s) 208, 595
BseMI GCAATG 1 cut(s) 606
BseMII CTCAG 2 cut(s) 263, 641
BseNI ACTGG 2 cut(s) 69, 485
BseXI GCAGC 2 cut(s) 421, 629
BseYI CCCAGC 1 cut(s) 244
BshFI GGCC 6 cut(s) 8, 14, 80, 289, 618, 805
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 208, 595
BsmAI GTCTC 1 cut(s) 451
BsnI GGCC 6 cut(s) 8, 14, 80, 289, 618, 805
Bsp1286I GDGCHC 2 cut(s) 45, 738
Bsp143I GATC 1 cut(s) 697
BspACI CCGC 4 cut(s) 73, 115, 260, 428
BspANI GGCC 6 cut(s) 8, 14, 80, 289, 618, 805
BspCNI CTCAG 2 cut(s) 262, 642
BspLI GGNNCC 2 cut(s) 288, 735
BspQI GCTCTTC 1 cut(s) 50
BsrBI CCGCTC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 606
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 2 cut(s) 69, 485
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 4 cut(s) 9, 464, 594, 791
BssMI GATC 1 cut(s) 697
BssSI CACGAG 1 cut(s) 126
BssT1I CCWWGG 3 cut(s) 9, 594, 791
Bst2BI CACGAG 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 3 cut(s) 50, 378, 449
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 249, 449, 581, 650
BstDSI CCRYGG 1 cut(s) 464
BstF5I GGATG 4 cut(s) 73, 460, 729, 757
BstKTI GATC 1 cut(s) 700
BstMAI GTCTC 1 cut(s) 451
BstMBI GATC 1 cut(s) 697
BstNI CCWGG 1 cut(s) 620
BstNSI RCATGY 2 cut(s) 91, 327
BstSCI CCNGG 1 cut(s) 618
BstV1I GCAGC 2 cut(s) 421, 629
BstV2I GAAGAC 1 cut(s) 219
BsuRI GGCC 6 cut(s) 8, 14, 80, 289, 618, 805
BtgI CCRYGG 1 cut(s) 464
BtgZI GCGATG 1 cut(s) 182
BtsCI GGATG 4 cut(s) 73, 460, 729, 757
Cac8I GCNNGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 2 cut(s) 282, 766
CviAII CATG 3 cut(s) 88, 324, 590
CviQI GTAC 2 cut(s) 282, 766
DdeI CTNAG 4 cut(s) 249, 449, 581, 650
DpnI GATC 1 cut(s) 699
DpnII GATC 1 cut(s) 697
EaeI YGGCCR 2 cut(s) 6, 78
Eam1104I CTCTTC 3 cut(s) 50, 378, 449
EarI CTCTTC 3 cut(s) 50, 378, 449
Ecl136II GAGCTC 1 cut(s) 43
Eco130I CCWWGG 3 cut(s) 9, 594, 791
Eco147I AGGCCT 1 cut(s) 14
Eco24I GRGCYC 2 cut(s) 45, 738
Eco53kI GAGCTC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 618
EcoT14I CCWWGG 3 cut(s) 9, 594, 791
EcoT38I GRGCYC 2 cut(s) 45, 738
ErhI CCWWGG 3 cut(s) 9, 594, 791
FaeI CATG 3 cut(s) 91, 327, 593
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FatI CATG 3 cut(s) 87, 323, 589
FauI CCCGC 1 cut(s) 421
FauNDI CATATG 1 cut(s) 508
FbaI TGATCA 1 cut(s) 697
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 261, 410, 643
FokI GGATG 4 cut(s) 80, 447, 736, 764
FriOI GRGCYC 2 cut(s) 45, 738
Fsp4HI GCNGC 3 cut(s) 261, 410, 643
GluI GCNGC 3 cut(s) 261, 410, 643
GsaI CCCAGC 1 cut(s) 248
HaeIII GGCC 6 cut(s) 8, 14, 80, 289, 618, 805
HapII CCGG 1 cut(s) 5
Hin1II CATG 3 cut(s) 91, 327, 593
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HpaII CCGG 1 cut(s) 5
HphI GGTGA 2 cut(s) 104, 443
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 3 cut(s) 19, 345, 651
Hpy188III TCNNGA 4 cut(s) 49, 126, 671, 707
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 4 cut(s) 16, 46, 535, 679
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 5 cut(s) 91, 196, 278, 398, 443
HpyF3I CTNAG 4 cut(s) 249, 449, 581, 650
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 3 cut(s) 91, 327, 593
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 1 cut(s) 697
LguI GCTCTTC 1 cut(s) 50
LmnI GCTCC 2 cut(s) 406, 733
Lsp1109I GCAGC 2 cut(s) 421, 629
LweI GCATC 3 cut(s) 205, 247, 575
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 2 cut(s) 110, 431
MalI GATC 1 cut(s) 699
MbiI CCGCTC 1 cut(s) 73
MboI GATC 1 cut(s) 697
MboII GAAGA 9 cut(s) 37, 40, 143, 219, 329, 361, 395, 466, 503
MfeI CAATTG 1 cut(s) 718
MhlI GDGCHC 2 cut(s) 45, 738
MluCI AATT 8 cut(s) 239, 296, 311, 399, 495, 711, 718, 807
MnlI CCTC 8 cut(s) 25, 339, 367, 523, 531, 626, 645, 789
MroNI GCCGGC 1 cut(s) 4
MroXI GAANNNNTTC 1 cut(s) 495
MseI TTAA 4 cut(s) 237, 368, 501, 810
MspA1I CMGCKG 1 cut(s) 117
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 620
MunI CAATTG 1 cut(s) 718
MvaI CCWGG 1 cut(s) 620
NaeI GCCGGC 1 cut(s) 6
NdeI CATATG 1 cut(s) 508
NdeII GATC 1 cut(s) 697
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 3 cut(s) 91, 327, 593
NlaIV GGNNCC 2 cut(s) 288, 735
NmuCI GTSAC 2 cut(s) 110, 431
NspI RCATGY 2 cut(s) 91, 327
PceI AGGCCT 1 cut(s) 14
PciSI GCTCTTC 1 cut(s) 50
PdiI GCCGGC 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 495
PkrI GCNGC 3 cut(s) 262, 411, 644
Psp124BI GAGCTC 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 618
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 2 cut(s) 288, 735
PspPI GGNCC 1 cut(s) 287
RsaI GTAC 2 cut(s) 283, 767
RsaNI GTAC 2 cut(s) 282, 766
SacI GAGCTC 1 cut(s) 45
SalI GTCGAC 1 cut(s) 56
SapI GCTCTTC 1 cut(s) 50
SaqAI TTAA 4 cut(s) 237, 368, 501, 810
SatI GCNGC 3 cut(s) 261, 410, 643
Sau3AI GATC 1 cut(s) 697
Sau96I GGNCC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 620
SduI GDGCHC 2 cut(s) 45, 738
SfaNI GCATC 3 cut(s) 205, 247, 575
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 8 cut(s) 239, 296, 311, 399, 495, 711, 718, 807
SseBI AGGCCT 1 cut(s) 14
SsiI CCGC 4 cut(s) 73, 115, 260, 428
SstI GAGCTC 1 cut(s) 45
StuI AGGCCT 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 618
StyI CCWWGG 3 cut(s) 9, 594, 791
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 57
TasI AATT 8 cut(s) 239, 296, 311, 399, 495, 711, 718, 807
TatI WGTACW 1 cut(s) 765
TauI GCSGC 1 cut(s) 263
Tru1I TTAA 4 cut(s) 237, 368, 501, 810
Tru9I TTAA 4 cut(s) 237, 368, 501, 810
TseFI GTSAC 2 cut(s) 110, 431
TseI GCWGC 2 cut(s) 409, 642
Tsp45I GTSAC 2 cut(s) 110, 431
TspDTI ATGAA 2 cut(s) 536, 797
TspGWI ACGGA 2 cut(s) 75, 453
XapI RAATTY 4 cut(s) 239, 296, 311, 495
XceI RCATGY 2 cut(s) 91, 327
XmiI GTMKAC 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.