Rh2CG569800

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015735
Physical Location & Seq
Forward (+)
74990300 .. 74991917
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG569800.1

Sequence Viewer

Length: 285 bp
ATGTGGAAGCCTGCAAAACTAGAGGAAATTGCTATTGCTGTTTCTACCCTGAATAGCCAGTTGAAGAAATTCTTAATCCATATGCGATATTCCCTCAACCAGAGGAAAACTTTAAGGTTCATACTTCAGTTTTCTTTAGTGATGCTGAATGGATATATACATATAGGCCATGCCAAGGCAATGTTTATTGACTTTGGCCTGGCAAAAGAGAGAGGTGGTGGCTGCTATCTGAGCAGTCCAATATTGGTGAAGATGATGACCTCCCTCAATTCAATAGCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

94

Amino Acids

10.68

Weight (kDa)

10.08

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1c PF00749 50 - 77 6.9e-07 tRNA synthetases class I (E and Q), catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 2 cut(s) 64, 273
AjnI CCWGG 1 cut(s) 198
AoxI GGCC 2 cut(s) 166, 196
ApeKI GCWGC 1 cut(s) 222
ApoI RAATTY 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 259
BbvI GCAGC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 200
BfaI CTAG 1 cut(s) 20
BisI GCNGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 58
Bse3DI GCAATG 2 cut(s) 186, 285
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMI GCAATG 2 cut(s) 186, 285
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 209
BshFI GGCC 2 cut(s) 168, 198
BslI CCNNNNNNNGG 1 cut(s) 175
BsnI GGCC 2 cut(s) 168, 198
BspANI GGCC 2 cut(s) 168, 198
BspCNI CTCAG 1 cut(s) 222
BsrDI GCAATG 2 cut(s) 186, 285
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 230
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 209
BsuRI GGCC 2 cut(s) 168, 198
Cac8I GCNNGC 1 cut(s) 12
CviAII CATG 1 cut(s) 170
CviJI RGCY 5 cut(s) 10, 57, 168, 198, 222
CviKI_1 RGCY 5 cut(s) 10, 57, 168, 198, 222
DdeI CTNAG 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 1 cut(s) 173
FaiI YATR 8 cut(s) 81, 83, 122, 156, 158, 162, 164, 171
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FatI CATG 1 cut(s) 169
FauNDI CATATG 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 223
Fsp4HI GCNGC 1 cut(s) 223
FspBI CTAG 1 cut(s) 20
GluI GCNGC 1 cut(s) 223
HaeIII GGCC 2 cut(s) 168, 198
Hin1II CATG 1 cut(s) 173
HphI GGTGA 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
HpyF3I CTNAG 1 cut(s) 230
Hsp92II CATG 1 cut(s) 173
LpnPI CCDG 6 cut(s) 24, 62, 71, 113, 185, 212
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 132
MaeI CTAG 1 cut(s) 20
MboII GAAGA 2 cut(s) 76, 262
MluCI AATT 3 cut(s) 27, 68, 268
MnlI CCTC 6 cut(s) 16, 96, 104, 206, 271, 275
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 2 cut(s) 74, 113
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 231
NdeI CATATG 1 cut(s) 81
NlaIII CATG 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 68
PkrI GCNGC 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
SaqAI TTAA 2 cut(s) 74, 113
SatI GCNGC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 200
SetI ASST 3 cut(s) 119, 217, 263
SfaNI GCATC 1 cut(s) 132
SgeI CNNG 9 cut(s) 23, 32, 61, 70, 112, 182, 187, 211, 212
Sse9I AATT 3 cut(s) 27, 68, 268
SspI AATATT 1 cut(s) 243
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 174
TasI AATT 3 cut(s) 27, 68, 268
Tru1I TTAA 2 cut(s) 74, 113
Tru9I TTAA 2 cut(s) 74, 113
TseI GCWGC 1 cut(s) 222
TspDTI ATGAA 1 cut(s) 109
XapI RAATTY 1 cut(s) 68
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.