Rh6DG141400

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0015735
Physical Location & Seq
Forward (+)
20300251 .. 20301042
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG141400.1

Sequence Viewer

Length: 330 bp
ATGAGCGGACTGCCAAACACACAATCGTCAATAACAACGTCACCGCTGTCATTCACGAGGCTGCAGTTACTCATGGATGCAGTCGAAGCATTGGTAATCAATCTTCTATACACGGTTGCTATAAAGTTTCCAGCAAATGCCCTTGCGCATCGCCCCGTATTGGCACACTACATTGTGTCTTCAAAGATTAAAATCCCAGCTCAGTTAGATGCGGCTTTGTCATTTTTTGCAAGTACGGGGCCAGAAAAATTCAAAACAAGTGAATTTGAAGAAACATGTGGTGTTGGTGTTGAAGTTTCAGAGGAAGAAATCAAGCAATCTGTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

109

Amino Acids

11.81

Weight (kDa)

5.61

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_synt_1c_R1 PF04558 31 - 109 1.7e-23 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 147
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 3 cut(s) 6, 44, 212
AcsI RAATTY 2 cut(s) 248, 263
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 160
AflIII ACRYGT 1 cut(s) 275
AgsI TTSAA 4 cut(s) 183, 253, 269, 293
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 61
ApoI RAATTY 2 cut(s) 248, 263
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 33
BarI GAAGNNNNNNTAC 2 cut(s) 87, 119
BauI CACGAG 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 62
BisI GCNGC 2 cut(s) 62, 213
BlsI GCNGC 2 cut(s) 63, 214
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 240
BmsI GCATC 3 cut(s) 67, 157, 199
BpiI GAAGAC 1 cut(s) 171
BsaBI GATNNNNATC 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse8I GATNNNNATC 1 cut(s) 191
BseGI GGATG 1 cut(s) 82
BseJI GATNNNNATC 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 48
BseYI CCCAGC 1 cut(s) 196
BshFI GGCC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 160
BsnI GGCC 1 cut(s) 241
BspACI CCGC 3 cut(s) 6, 44, 212
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 240
BspMAI CTGCAG 1 cut(s) 66
BsrBI CCGCTC 1 cut(s) 6
BssSI CACGAG 1 cut(s) 55
Bst2BI CACGAG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 82
BstHHI GCGC 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 279
BstSFI CTRYAG 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 48
BstV2I GAAGAC 1 cut(s) 171
BsuRI GGCC 1 cut(s) 241
BtgZI GCGATG 1 cut(s) 134
BtsCI GGATG 1 cut(s) 82
CfoI GCGC 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 234
CviAII CATG 2 cut(s) 73, 276
CviJI RGCY 4 cut(s) 61, 200, 215, 241
CviKI_1 RGCY 4 cut(s) 61, 200, 215, 241
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 1 cut(s) 201
FaeI CATG 2 cut(s) 76, 279
FaiI YATR 4 cut(s) 74, 109, 122, 277
FatI CATG 2 cut(s) 72, 275
Fnu4HI GCNGC 2 cut(s) 62, 213
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 2 cut(s) 62, 213
FspI TGCGCA 1 cut(s) 147
GlaI GCGC 1 cut(s) 147
GluI GCNGC 2 cut(s) 62, 213
GsaI CCCAGC 1 cut(s) 200
HaeIII GGCC 1 cut(s) 241
HhaI GCGC 1 cut(s) 148
Hin1II CATG 2 cut(s) 76, 279
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HphI GGTGA 1 cut(s) 33
Hpy188I TCNGA 1 cut(s) 301
Hpy188III TCNNGA 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 3 cut(s) 64, 80, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 2 cut(s) 76, 279
HspAI GCGC 1 cut(s) 146
LpnPI CCDG 3 cut(s) 144, 210, 255
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 3 cut(s) 67, 157, 199
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 2 cut(s) 39, 66
MbiI CCGCTC 1 cut(s) 6
MboII GAAGA 4 cut(s) 95, 171, 281, 317
MluCI AATT 2 cut(s) 248, 263
MnlI CCTC 2 cut(s) 51, 295
MseI TTAA 2 cut(s) 189, 324
MspA1I CMGCKG 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 86
NlaIII CATG 2 cut(s) 76, 279
NlaIV GGNNCC 1 cut(s) 240
NmuCI GTSAC 1 cut(s) 39
NsbI TGCGCA 1 cut(s) 147
NspI RCATGY 1 cut(s) 279
PciI ACATGT 1 cut(s) 275
PkrI GCNGC 2 cut(s) 63, 214
PscI ACATGT 1 cut(s) 275
PspFI CCCAGC 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 1 cut(s) 239
PstI CTGCAG 1 cut(s) 66
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SaqAI TTAA 2 cut(s) 189, 324
SatI GCNGC 2 cut(s) 62, 213
Sau96I GGNCC 1 cut(s) 239
SetI ASST 2 cut(s) 41, 202
SfaNI GCATC 3 cut(s) 67, 157, 199
SfcI CTRYAG 1 cut(s) 62
Sse9I AATT 2 cut(s) 248, 263
SsiI CCGC 3 cut(s) 6, 44, 212
TaaI ACNGT 1 cut(s) 115
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 84
TasI AATT 2 cut(s) 248, 263
TauI GCSGC 1 cut(s) 215
Tru1I TTAA 2 cut(s) 189, 324
Tru9I TTAA 2 cut(s) 189, 324
TseFI GTSAC 1 cut(s) 39
TseI GCWGC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 39
XapI RAATTY 2 cut(s) 248, 263
XceI RCATGY 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.