RchiOBHm_Chr1g0330661

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0015731
Physical Location & Seq
Reverse (-)
20443470 .. 20446193
2724 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55980

Sequence Viewer

Length: 648 bp
ATGCAAGCTGCGGCTGTGTCGGAGATGCCCCGCAAAATTTGGGTGTTCGGTTGTGGCCCGAAAGACCATGCTTATGTGATTGAGTTTATTGATCAGTACTGGGAGACTCTCATGCCTGGAGAATCAGTGTTCCTGTTTCCCTGGATGGGTACAATTGCTCATGTGCAGTGTTCCAACGAGAAGCAGCTTATAGTTCCTGACCACACAGTTTTCACCAACGACCTTTGCCCGGTCACAATTAGTGGTCTGGTTTCTCTCAAGATTGAGGATGTTACGCGGGCCTCGTATCTTCCTGAAAATCCTATGGCTACAGCTATTAGGTTTGCCCAGACTGCCATGCGTTCTGCGGTTGGGAAAGTGGCTTATGATAAGTTACATCTCGAAACACGATACATCAACAATTTCATATTGAACGAACTCAGCATTAGATTCTACTTACTGGGCTTGAGGTGTCTTCAGTTTGATATAAAGCTTCCGCAGGAGGTGCTAGAAGGAATGGATATCCGTGCAGCAGTCAAACGCATCAAACGCATCAAAGGCATCGATGGCGTAATTCTTGATGAGTCTCAGAAAGAAGAGCTACACGGCCTTCACCAAGCCTTGTCAAAGAATGTTGAGGAAACCAGTGGGACACGTGCTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

215

Amino Acids

24.25

Weight (kDa)

6.08

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 277
AciI CCGC 5 cut(s) 11, 31, 277, 347, 476
AcsI RAATTY 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 440
AcvI CACGTG 1 cut(s) 635
AfaI GTAC 2 cut(s) 98, 151
AfiI CCNNNNNNNGG 2 cut(s) 146, 229
AflIII ACRYGT 1 cut(s) 632
AgsI TTSAA 1 cut(s) 412
AjnI CCWGG 2 cut(s) 115, 140
AluBI AGCT 5 cut(s) 8, 187, 314, 472, 580
AluI AGCT 5 cut(s) 8, 187, 314, 472, 580
Alw26I GTCTC 2 cut(s) 98, 570
AoxI GGCC 3 cut(s) 55, 279, 586
ApeKI GCWGC 5 cut(s) 8, 184, 509, 638, 641
ApoI RAATTY 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 56, 279
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 2 cut(s) 205, 584
BbrPI CACGTG 1 cut(s) 635
BbsI GAAGAC 1 cut(s) 446
BbvI GCAGC 4 cut(s) 196, 521, 625, 628
BccI CCATC 2 cut(s) 139, 539
BceAI ACGGC 1 cut(s) 601
BciT130I CCWGG 2 cut(s) 117, 142
BclI TGATCA 1 cut(s) 91
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 2 cut(s) 98, 570
BfaI CTAG 1 cut(s) 488
BfmI CTRYAG 1 cut(s) 309
BisI GCNGC 6 cut(s) 9, 12, 185, 510, 639, 642
BlsI GCNGC 6 cut(s) 10, 13, 186, 511, 640, 643
BmcAI AGTACT 1 cut(s) 98
Bme1390I CCNGG 3 cut(s) 117, 142, 230
BmgT120I GGNCC 2 cut(s) 56, 279
BmrFI CCNGG 3 cut(s) 117, 142, 230
BmrI ACTGGG 2 cut(s) 109, 449
BmsI GCATC 4 cut(s) 15, 531, 540, 549
BmuI ACTGGG 2 cut(s) 109, 449
BpiI GAAGAC 1 cut(s) 446
BpmI CTGGAG 1 cut(s) 138
BpuEI CTTGAG 2 cut(s) 242, 466
BpuMI CCSGG 1 cut(s) 230
Bsa29I ATCGAT 1 cut(s) 543
BsaAI YACGTR 1 cut(s) 635
BsaJI CCNNGG 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 229
Bse1I ACTGG 3 cut(s) 104, 444, 624
BseBI CCWGG 2 cut(s) 117, 142
BseCI ATCGAT 1 cut(s) 543
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 2 cut(s) 150, 274
BseLI CCNNNNNNNGG 2 cut(s) 146, 229
BseMII CTCAG 2 cut(s) 433, 581
BseNI ACTGG 3 cut(s) 104, 444, 624
BseXI GCAGC 4 cut(s) 196, 521, 625, 628
BsgI GTGCAG 2 cut(s) 185, 528
Bsh1236I CGCG 1 cut(s) 277
BshFI GGCC 3 cut(s) 57, 281, 588
BshVI ATCGAT 1 cut(s) 543
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 643
BslI CCNNNNNNNGG 2 cut(s) 146, 229
BsmAI GTCTC 2 cut(s) 98, 570
BsmFI GGGAC 1 cut(s) 643
BsnI GGCC 3 cut(s) 57, 281, 588
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 5 cut(s) 11, 31, 277, 347, 476
BspANI GGCC 3 cut(s) 57, 281, 588
BspCNI CTCAG 2 cut(s) 432, 580
BspDI ATCGAT 1 cut(s) 543
BspFNI CGCG 1 cut(s) 277
BspQI GCTCTTC 1 cut(s) 570
BsrI ACTGG 3 cut(s) 104, 444, 624
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 1 cut(s) 91
Bst2UI CCWGG 2 cut(s) 117, 142
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 570
BstAPI GCANNNNNTGC 1 cut(s) 484
BstBAI YACGTR 1 cut(s) 635
BstC8I GCNNGC 2 cut(s) 6, 279
BstDEI CTNAG 2 cut(s) 419, 567
BstF5I GGATG 2 cut(s) 150, 274
BstFNI CGCG 1 cut(s) 277
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 2 cut(s) 98, 570
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 5 cut(s) 332, 484, 528, 537, 546
BstNI CCWGG 2 cut(s) 117, 142
BstSCI CCNGG 3 cut(s) 115, 140, 228
BstSFI CTRYAG 1 cut(s) 309
BstUI CGCG 1 cut(s) 277
BstV1I GCAGC 4 cut(s) 196, 521, 625, 628
BstV2I GAAGAC 1 cut(s) 446
Bsu15I ATCGAT 1 cut(s) 543
BsuRI GGCC 3 cut(s) 57, 281, 588
BsuTUI ATCGAT 1 cut(s) 543
BtsCI GGATG 2 cut(s) 150, 274
BtsI GCAGTG 1 cut(s) 173
BtsIMutI CAGTG 3 cut(s) 132, 173, 631
Cac8I GCNNGC 2 cut(s) 6, 279
Cfr13I GGNCC 2 cut(s) 56, 279
ClaI ATCGAT 1 cut(s) 543
Csp6I GTAC 2 cut(s) 97, 150
CviAII CATG 4 cut(s) 68, 112, 161, 337
CviQI GTAC 2 cut(s) 97, 150
DdeI CTNAG 2 cut(s) 419, 567
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Eco32I GATATC 1 cut(s) 502
Eco57I CTGAAG 1 cut(s) 440
Eco72I CACGTG 1 cut(s) 635
EcoRII CCWGG 2 cut(s) 115, 140
EcoRV GATATC 1 cut(s) 502
FaeI CATG 4 cut(s) 71, 115, 164, 340
FaqI GGGAC 1 cut(s) 643
FatI CATG 4 cut(s) 67, 111, 160, 336
FauI CCCGC 2 cut(s) 38, 270
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 6 cut(s) 9, 12, 185, 510, 639, 642
FokI GGATG 2 cut(s) 157, 281
Fsp4HI GCNGC 6 cut(s) 9, 12, 185, 510, 639, 642
FspBI CTAG 1 cut(s) 488
GluI GCNGC 6 cut(s) 9, 12, 185, 510, 639, 642
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 3 cut(s) 57, 281, 588
HapII CCGG 1 cut(s) 230
Hin1II CATG 4 cut(s) 71, 115, 164, 340
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 4 cut(s) 106, 122, 429, 563
HpaII CCGG 1 cut(s) 230
HphI GGTGA 2 cut(s) 205, 584
Hpy188I TCNGA 2 cut(s) 22, 570
Hpy188III TCNNGA 5 cut(s) 197, 259, 293, 380, 557
HpyAV CCTTC 2 cut(s) 485, 599
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 634
HpyCH4V TGCA 3 cut(s) 4, 166, 509
HpyF10VI GCNNNNNNNGC 5 cut(s) 332, 484, 528, 537, 546
HpyF3I CTNAG 2 cut(s) 419, 567
HpySE526I ACGT 1 cut(s) 634
Hsp92II CATG 4 cut(s) 71, 115, 164, 340
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 1 cut(s) 91
LguI GCTCTTC 1 cut(s) 570
Lsp1109I GCAGC 4 cut(s) 196, 521, 625, 628
LweI GCATC 4 cut(s) 15, 531, 540, 549
MaeI CTAG 1 cut(s) 488
MaeII ACGT 1 cut(s) 634
MaeIII GTNAC 3 cut(s) 232, 271, 372
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 3 cut(s) 281, 446, 587
MfeI CAATTG 1 cut(s) 153
MluCI AATT 5 cut(s) 36, 153, 237, 400, 552
MlyI GAGTC 2 cut(s) 100, 572
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 5 cut(s) 259, 292, 441, 475, 610
MslI CAYNNNNRTG 1 cut(s) 72
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 3 cut(s) 117, 142, 230
MunI CAATTG 1 cut(s) 153
MvaI CCWGG 2 cut(s) 117, 142
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 5 cut(s) 332, 484, 528, 537, 546
NciI CCSGG 1 cut(s) 230
NdeII GATC 1 cut(s) 91
NlaIII CATG 4 cut(s) 71, 115, 164, 340
NmuCI GTSAC 1 cut(s) 232
PciSI GCTCTTC 1 cut(s) 570
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PfeI GAWTC 2 cut(s) 122, 429
PkrI GCNGC 6 cut(s) 10, 13, 186, 511, 640, 643
PleI GAGTC 2 cut(s) 100, 571
PmaCI CACGTG 1 cut(s) 635
PmlI CACGTG 1 cut(s) 635
PpsI GAGTC 2 cut(s) 100, 571
Ppu21I YACGTR 1 cut(s) 635
Psp6I CCWGG 2 cut(s) 115, 140
PspCI CACGTG 1 cut(s) 635
PspGI CCWGG 2 cut(s) 115, 140
PspPI GGNCC 2 cut(s) 56, 279
RsaI GTAC 2 cut(s) 98, 151
RsaNI GTAC 2 cut(s) 97, 150
RseI CAYNNNNRTG 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 570
SatI GCNGC 6 cut(s) 9, 12, 185, 510, 639, 642
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 2 cut(s) 56, 279
ScaI AGTACT 1 cut(s) 98
SchI GAGTC 2 cut(s) 100, 572
ScrFI CCNGG 3 cut(s) 117, 142, 230
SfaNI GCATC 4 cut(s) 15, 531, 540, 549
SfcI CTRYAG 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 72
SmlI CTYRAG 2 cut(s) 257, 445
SmoI CTYRAG 2 cut(s) 257, 445
Sse9I AATT 5 cut(s) 36, 153, 237, 400, 552
SsiI CCGC 5 cut(s) 11, 31, 277, 347, 476
SspMI CTAG 1 cut(s) 488
StyD4I CCNGG 3 cut(s) 115, 140, 228
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 1 cut(s) 637
TaqI TCGA 2 cut(s) 381, 543
TasI AATT 5 cut(s) 36, 153, 237, 400, 552
TatI WGTACW 1 cut(s) 96
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 2 cut(s) 122, 429
TscAI CASTG 3 cut(s) 132, 173, 631
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 5 cut(s) 8, 184, 509, 638, 641
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 394
TspGWI ACGGA 1 cut(s) 494
TspRI CASTG 3 cut(s) 132, 173, 631
XapI RAATTY 1 cut(s) 36
XspI CTAG 1 cut(s) 488
ZrmI AGTACT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.