Rmu_sc0006444.1_g000001

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006444.1
OG0015731
Physical Location & Seq
Reverse (-)
14614 .. 16264
1651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006444.1_g000001.1.cds

Sequence Viewer

Length: 750 bp
atgttgaggcgtaattgcttgaacgcgttgggatctgtgagacgtctcagccatctccgatttcgaaattatgcaagctgcggctgtgtcggagatgcccccgcaaaattttggtgttcggttgtggccccgaaagaccatttttatgtgatggagcgtattgatcagtactgtgcgactcgcatgcctggagaatcagagttcctgtttccctggatcgatacaattgctcatgtgcagtgttccaacgagaagcagcttatagttcctgaccacacagttttcaccaacgacctttgcccagtcacaattagtggtctgattgaggatgctacgcgggcctcgtatcttcctgaaaatcctatggctaaagctattaggtttgcccagactgccatgcgttctgcggttgggaaagtggcttatgataagttacatctcgaaacacgatacatcaacaatttcataatgaacgaactctcctgtagattctacatactgggcttgaggtgtcttcagtttgatataaagcttccgcaagaggtgctagaaggaatggatatccgtgcagcagtcaaacgcatcaaacgcatcaaaggcgtcgatggcgtaattcttgatgagtctcagaaagaagagctacacggcctttaccaagccttgtcaaagaatgttgaggaaaccagtgggacatttgacttatacaagttctttaggtcgcaatccatgtcagttgttccaaataattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

249

Amino Acids

28.43

Weight (kDa)

8.34

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 46
AccII CGCG 2 cut(s) 26, 337
AciI CCGC 5 cut(s) 81, 102, 337, 407, 536
AclWI GGATC 2 cut(s) 40, 224
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 500
AcyI GRCGYC 2 cut(s) 43, 600
AfaI GTAC 1 cut(s) 170
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 1 cut(s) 22
AjnI CCWGG 2 cut(s) 187, 212
AloI GAACNNNNNNTCC 2 cut(s) 464, 496
AluBI AGCT 5 cut(s) 78, 259, 374, 532, 640
AluI AGCT 5 cut(s) 78, 259, 374, 532, 640
Alw26I GTCTC 3 cut(s) 34, 50, 630
AlwI GGATC 2 cut(s) 40, 224
AoxI GGCC 3 cut(s) 126, 339, 646
ApeKI GCWGC 3 cut(s) 78, 256, 569
ApoI RAATTY 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 127, 339
AsuHPI GGTGA 1 cut(s) 277
AsuII TTCGAA 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 506
BbvI GCAGC 3 cut(s) 65, 268, 581
BccI CCATC 3 cut(s) 60, 145, 599
BceAI ACGGC 1 cut(s) 661
BcgI CGANNNNNNTGC 4 cut(s) 166, 200, 209, 243
BciT130I CCWGG 2 cut(s) 189, 214
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 3 cut(s) 34, 50, 630
BfaI CTAG 1 cut(s) 548
BfmI CTRYAG 1 cut(s) 484
BisI GCNGC 4 cut(s) 79, 82, 257, 570
BlsI GCNGC 4 cut(s) 80, 83, 258, 571
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 2 cut(s) 189, 214
BmgT120I GGNCC 2 cut(s) 127, 339
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 2 cut(s) 189, 214
BmrI ACTGGG 2 cut(s) 296, 509
BmsI GCATC 4 cut(s) 85, 319, 591, 600
BmuI ACTGGG 2 cut(s) 296, 509
BpiI GAAGAC 1 cut(s) 506
BpmI CTGGAG 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 64
BpuEI CTTGAG 1 cut(s) 526
Bsa29I ATCGAT 1 cut(s) 219
BsaHI GRCGYC 2 cut(s) 43, 600
BsaJI CCNNGG 1 cut(s) 212
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bse1I ACTGG 3 cut(s) 302, 504, 684
BseBI CCWGG 2 cut(s) 189, 214
BseCI ATCGAT 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 212
BseGI GGATG 1 cut(s) 334
BseMII CTCAG 2 cut(s) 61, 641
BseNI ACTGG 3 cut(s) 302, 504, 684
BseXI GCAGC 3 cut(s) 65, 268, 581
BsgI GTGCAG 2 cut(s) 257, 588
Bsh1236I CGCG 2 cut(s) 26, 337
BshFI GGCC 3 cut(s) 128, 341, 648
BshVI ATCGAT 1 cut(s) 219
BslFI GGGAC 1 cut(s) 703
BsmAI GTCTC 3 cut(s) 34, 50, 630
BsmBI CGTCTC 2 cut(s) 34, 50
BsmFI GGGAC 1 cut(s) 703
BsnI GGCC 3 cut(s) 128, 341, 648
Bsp119I TTCGAA 1 cut(s) 64
Bsp143I GATC 3 cut(s) 32, 163, 216
BspACI CCGC 5 cut(s) 81, 102, 337, 407, 536
BspANI GGCC 3 cut(s) 128, 341, 648
BspCNI CTCAG 2 cut(s) 60, 640
BspDI ATCGAT 1 cut(s) 219
BspFNI CGCG 2 cut(s) 26, 337
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 2 cut(s) 40, 224
BspQI GCTCTTC 1 cut(s) 630
BspT104I TTCGAA 1 cut(s) 64
BsrI ACTGG 3 cut(s) 302, 504, 684
BssECI CCNNGG 1 cut(s) 212
BssMI GATC 3 cut(s) 32, 163, 216
BssNI GRCGYC 2 cut(s) 43, 600
Bst2UI CCWGG 2 cut(s) 189, 214
Bst4CI ACNGT 2 cut(s) 173, 280
Bst6I CTCTTC 1 cut(s) 630
BstACI GRCGYC 2 cut(s) 43, 600
BstAPI GCANNNNNTGC 1 cut(s) 544
BstBI TTCGAA 1 cut(s) 64
BstC8I GCNNGC 3 cut(s) 76, 185, 339
BstDEI CTNAG 2 cut(s) 47, 627
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 2 cut(s) 26, 337
BstKTI GATC 3 cut(s) 35, 166, 219
BstMAI GTCTC 3 cut(s) 34, 50, 630
BstMBI GATC 3 cut(s) 32, 163, 216
BstMWI GCNNNNNNNGC 6 cut(s) 338, 392, 544, 588, 597, 606
BstNI CCWGG 2 cut(s) 189, 214
BstNSI RCATGY 1 cut(s) 187
BstSCI CCNGG 2 cut(s) 187, 212
BstSFI CTRYAG 1 cut(s) 484
BstUI CGCG 2 cut(s) 26, 337
BstV1I GCAGC 3 cut(s) 65, 268, 581
BstV2I GAAGAC 1 cut(s) 506
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
Bsu15I ATCGAT 1 cut(s) 219
BsuRI GGCC 3 cut(s) 128, 341, 648
BsuTUI ATCGAT 1 cut(s) 219
BtsCI GGATG 1 cut(s) 334
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 2 cut(s) 245, 691
Cac8I GCNNGC 3 cut(s) 76, 185, 339
Cfr13I GGNCC 2 cut(s) 127, 339
ClaI ATCGAT 1 cut(s) 219
CseI GACGC 1 cut(s) 589
Csp6I GTAC 1 cut(s) 169
CviAII CATG 4 cut(s) 184, 233, 397, 727
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 47, 627
DpnI GATC 3 cut(s) 34, 165, 218
DpnII GATC 3 cut(s) 32, 163, 216
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
Eco32I GATATC 1 cut(s) 562
Eco57I CTGAAG 1 cut(s) 500
EcoRII CCWGG 2 cut(s) 187, 212
EcoRV GATATC 1 cut(s) 562
Esp3I CGTCTC 2 cut(s) 34, 50
FaeI CATG 4 cut(s) 187, 236, 400, 730
FaqI GGGAC 1 cut(s) 703
FatI CATG 4 cut(s) 183, 232, 396, 726
FauI CCCGC 2 cut(s) 109, 330
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 4 cut(s) 79, 82, 257, 570
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 4 cut(s) 79, 82, 257, 570
FspBI CTAG 1 cut(s) 548
GluI GCNGC 4 cut(s) 79, 82, 257, 570
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 3 cut(s) 128, 341, 648
HgaI GACGC 1 cut(s) 589
Hin1I GRCGYC 2 cut(s) 43, 600
Hin1II CATG 4 cut(s) 187, 236, 400, 730
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 4 cut(s) 178, 194, 489, 623
HphI GGTGA 1 cut(s) 277
Hpy188I TCNGA 5 cut(s) 59, 92, 199, 321, 630
Hpy188III TCNNGA 4 cut(s) 269, 353, 440, 617
Hpy99I CGWCG 1 cut(s) 605
HpyAV CCTTC 1 cut(s) 545
HpyCH4III ACNGT 2 cut(s) 173, 280
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 3 cut(s) 74, 238, 569
HpyF10VI GCNNNNNNNGC 6 cut(s) 338, 392, 544, 588, 597, 606
HpyF3I CTNAG 2 cut(s) 47, 627
HpySE526I ACGT 1 cut(s) 43
Hsp92I GRCGYC 2 cut(s) 43, 600
Hsp92II CATG 4 cut(s) 187, 236, 400, 730
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 3 cut(s) 32, 163, 216
LguI GCTCTTC 1 cut(s) 630
LmnI GCTCC 1 cut(s) 154
Lsp1109I GCAGC 3 cut(s) 65, 268, 581
LweI GCATC 4 cut(s) 85, 319, 591, 600
MaeI CTAG 1 cut(s) 548
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 2 cut(s) 304, 432
MalI GATC 3 cut(s) 34, 165, 218
MboI GATC 3 cut(s) 32, 163, 216
MboII GAAGA 3 cut(s) 341, 506, 647
MfeI CAATTG 1 cut(s) 225
MflI RGATCY 1 cut(s) 32
MluCI AATT 8 cut(s) 13, 67, 107, 225, 309, 460, 612, 745
MluI ACGCGT 1 cut(s) 24
MlyI GAGTC 2 cut(s) 172, 632
MmeI TCCRAC 2 cut(s) 70, 270
MnlI CCTC 5 cut(s) 319, 352, 501, 535, 670
MslI CAYNNNNRTG 1 cut(s) 144
MspR9I CCNGG 2 cut(s) 189, 214
MunI CAATTG 1 cut(s) 225
MvaI CCWGG 2 cut(s) 189, 214
MvnI CGCG 2 cut(s) 26, 337
MwoI GCNNNNNNNGC 6 cut(s) 338, 392, 544, 588, 597, 606
NdeII GATC 3 cut(s) 32, 163, 216
NlaIII CATG 4 cut(s) 187, 236, 400, 730
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 304
NspI RCATGY 1 cut(s) 187
NspV TTCGAA 1 cut(s) 64
PaeI GCATGC 1 cut(s) 187
PciSI GCTCTTC 1 cut(s) 630
PcsI WCGNNNNNNNCGW 1 cut(s) 341
PfeI GAWTC 2 cut(s) 194, 489
PkrI GCNGC 4 cut(s) 80, 83, 258, 571
PleI GAGTC 2 cut(s) 172, 631
PpsI GAGTC 2 cut(s) 172, 631
Psp6I CCWGG 2 cut(s) 187, 212
PspGI CCWGG 2 cut(s) 187, 212
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 2 cut(s) 127, 339
PsuI RGATCY 1 cut(s) 32
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 144
SapI GCTCTTC 1 cut(s) 630
SatI GCNGC 4 cut(s) 79, 82, 257, 570
Sau3AI GATC 3 cut(s) 32, 163, 216
Sau96I GGNCC 2 cut(s) 127, 339
ScaI AGTACT 1 cut(s) 170
SchI GAGTC 2 cut(s) 172, 632
ScrFI CCNGG 2 cut(s) 189, 214
SfaNI GCATC 4 cut(s) 85, 319, 591, 600
SfcI CTRYAG 1 cut(s) 484
SfuI TTCGAA 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 505
SmoI CTYRAG 1 cut(s) 505
SphI GCATGC 1 cut(s) 187
Sse9I AATT 8 cut(s) 13, 67, 107, 225, 309, 460, 612, 745
SsiI CCGC 5 cut(s) 81, 102, 337, 407, 536
SspMI CTAG 1 cut(s) 548
StyD4I CCNGG 2 cut(s) 187, 212
TaaI ACNGT 2 cut(s) 173, 280
TaiI ACGT 1 cut(s) 46
TaqI TCGA 4 cut(s) 64, 219, 441, 603
TasI AATT 8 cut(s) 13, 67, 107, 225, 309, 460, 612, 745
TatI WGTACW 1 cut(s) 168
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 2 cut(s) 194, 489
TscAI CASTG 2 cut(s) 245, 691
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 3 cut(s) 78, 256, 569
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 2 cut(s) 454, 485
TspGWI ACGGA 1 cut(s) 554
TspRI CASTG 2 cut(s) 245, 691
XapI RAATTY 1 cut(s) 107
XceI RCATGY 1 cut(s) 187
XspI CTAG 1 cut(s) 548
ZraI GACGTC 1 cut(s) 44
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.