Rw1G009010

SPFH domain / Band 7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0015731
Physical Location & Seq
Forward (+)
19772551 .. 19776048
3498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009010.1

Sequence Viewer

Length: 735 bp
ATGAGTATGTTGAGGCGTAATTGCTTGAACGCGTTGGGATCTGTGAGACGTCTCAGCCATCTCCGATTTCGAAATTATGCAAGCTGCGGCTGTGTCGGAGATGCCCCCGCAAAATCTGGTTGTTCGGTTGTGGCCCCGAAAGACCATTTTTATGTGATGGAGCGTATTGATCAGTACTGGGAGACTCTCATGCCTGGAGAATCAGTGTTCCTGCTTCCCTGGATGGATAAAATTGCTCATGTGCAGTGTTCCAACGAGAAGCAGCTTATAGTTCCTGACCACACAGTTTTCACCAACGACCTTTGCCCAGTCACAATTAGTGGTTTGATTTCTCTCAAGATTGTGGATGCTCTGCGGGCCTCGTATCTTCCTGAACATCCTATGGCTACAGCTATTAGGCGTGCCCAGACTGCCATGCGTTCTGCGGTTGGGAAAGTGGCTTATGATAAGTTACATCTCGAAACACGATACATCAACAATTTCATAATGAAAGAACTCAACAGTAGATTCCTCATACTGGGCTTGAGGTGTCTTCAGTTTGATATAAAGCTTCCGCAGGAGGTGCTAGAAGGAATGGATATCCGTGCAGCAGTCAAACGCATCAAACGCATCAAAGGCATCGATGGCGTAATTCTTGATGAGTCTCAGAAAGAAGAGCTACACGGCCTTTACCAAGCCTTGTCAAAGAATGTTGAGGAAACCAGTGGGACATTTGATATTGAAATGGCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

244

Amino Acids

27.56

Weight (kDa)

8.44

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 45 - 200 1.7e-06 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 52
Acc36I ACCTGC 1 cut(s) 719
AccII CGCG 1 cut(s) 32
AciI CCGC 5 cut(s) 87, 108, 355, 425, 554
AclWI GGATC 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 518
AcyI GRCGYC 1 cut(s) 49
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 517
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 2 cut(s) 28, 722
AjnI CCWGG 2 cut(s) 193, 218
AluBI AGCT 5 cut(s) 84, 265, 392, 550, 658
AluI AGCT 5 cut(s) 84, 265, 392, 550, 658
Alw26I GTCTC 4 cut(s) 40, 56, 176, 648
AlwI GGATC 1 cut(s) 46
AoxI GGCC 3 cut(s) 132, 357, 664
ApeKI GCWGC 3 cut(s) 84, 262, 587
AspS9I GGNCC 2 cut(s) 133, 357
AsuHPI GGTGA 1 cut(s) 283
AsuII TTCGAA 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 524
BbvI GCAGC 3 cut(s) 71, 274, 599
BccI CCATC 4 cut(s) 66, 151, 217, 617
BceAI ACGGC 1 cut(s) 679
BciT130I CCWGG 2 cut(s) 195, 220
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 4 cut(s) 40, 56, 176, 648
BfaI CTAG 1 cut(s) 566
BfmI CTRYAG 1 cut(s) 387
BfuAI ACCTGC 1 cut(s) 719
BisI GCNGC 4 cut(s) 85, 88, 263, 588
BlsI GCNGC 4 cut(s) 86, 89, 264, 589
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 2 cut(s) 195, 220
BmgT120I GGNCC 2 cut(s) 133, 357
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 2 cut(s) 195, 220
BmrI ACTGGG 3 cut(s) 187, 302, 527
BmsI GCATC 5 cut(s) 91, 337, 609, 618, 627
BmuI ACTGGG 3 cut(s) 187, 302, 527
BpiI GAAGAC 1 cut(s) 524
BpmI CTGGAG 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 70
BpuEI CTTGAG 2 cut(s) 320, 544
Bsa29I ATCGAT 1 cut(s) 621
BsaHI GRCGYC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 1 cut(s) 517
Bse1I ACTGG 4 cut(s) 182, 308, 522, 702
BseBI CCWGG 2 cut(s) 195, 220
BseCI ATCGAT 1 cut(s) 621
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 3 cut(s) 228, 352, 376
BseLI CCNNNNNNNGG 1 cut(s) 517
BseMII CTCAG 2 cut(s) 67, 659
BseNI ACTGG 4 cut(s) 182, 308, 522, 702
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 3 cut(s) 71, 274, 599
BsgI GTGCAG 2 cut(s) 263, 606
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 3 cut(s) 134, 359, 666
BshVI ATCGAT 1 cut(s) 621
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 1 cut(s) 517
BsmAI GTCTC 4 cut(s) 40, 56, 176, 648
BsmBI CGTCTC 2 cut(s) 40, 56
BsmFI GGGAC 1 cut(s) 721
BsnI GGCC 3 cut(s) 134, 359, 666
Bsp119I TTCGAA 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 406
Bsp143I GATC 2 cut(s) 38, 169
BspACI CCGC 5 cut(s) 87, 108, 355, 425, 554
BspANI GGCC 3 cut(s) 134, 359, 666
BspCNI CTCAG 2 cut(s) 66, 658
BspDI ATCGAT 1 cut(s) 621
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 135
BspMI ACCTGC 1 cut(s) 719
BspPI GGATC 1 cut(s) 46
BspQI GCTCTTC 1 cut(s) 648
BspT104I TTCGAA 1 cut(s) 70
BsrI ACTGG 4 cut(s) 182, 308, 522, 702
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 2 cut(s) 38, 169
BssNI GRCGYC 1 cut(s) 49
Bst2UI CCWGG 2 cut(s) 195, 220
Bst4CI ACNGT 2 cut(s) 286, 503
Bst6I CTCTTC 1 cut(s) 648
BstACI GRCGYC 1 cut(s) 49
BstAPI GCANNNNNTGC 1 cut(s) 562
BstBI TTCGAA 1 cut(s) 70
BstC8I GCNNGC 3 cut(s) 82, 357, 402
BstDEI CTNAG 2 cut(s) 53, 645
BstF5I GGATG 3 cut(s) 228, 352, 376
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 2 cut(s) 41, 172
BstMAI GTCTC 4 cut(s) 40, 56, 176, 648
BstMBI GATC 2 cut(s) 38, 169
BstMWI GCNNNNNNNGC 6 cut(s) 356, 410, 562, 606, 615, 624
BstNI CCWGG 2 cut(s) 195, 220
BstSCI CCNGG 2 cut(s) 193, 218
BstSFI CTRYAG 1 cut(s) 387
BstSLI GKGCMC 1 cut(s) 406
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 3 cut(s) 71, 274, 599
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
Bsu15I ATCGAT 1 cut(s) 621
BsuRI GGCC 3 cut(s) 134, 359, 666
BsuTUI ATCGAT 1 cut(s) 621
BtsCI GGATG 3 cut(s) 228, 352, 376
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 3 cut(s) 210, 251, 709
BveI ACCTGC 1 cut(s) 719
Cac8I GCNNGC 3 cut(s) 82, 357, 402
Cfr13I GGNCC 2 cut(s) 133, 357
ClaI ATCGAT 1 cut(s) 621
Csp6I GTAC 1 cut(s) 175
CviAII CATG 3 cut(s) 190, 239, 415
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 2 cut(s) 53, 645
DpnI GATC 2 cut(s) 40, 171
DpnII GATC 2 cut(s) 38, 169
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Eco32I GATATC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 518
EcoRII CCWGG 2 cut(s) 193, 218
EcoRV GATATC 1 cut(s) 580
Esp3I CGTCTC 2 cut(s) 40, 56
FaeI CATG 3 cut(s) 193, 242, 418
FaqI GGGAC 1 cut(s) 721
FatI CATG 3 cut(s) 189, 238, 414
FauI CCCGC 2 cut(s) 115, 348
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 4 cut(s) 85, 88, 263, 588
FokI GGATG 3 cut(s) 235, 359, 363
Fsp4HI GCNGC 4 cut(s) 85, 88, 263, 588
FspBI CTAG 1 cut(s) 566
GluI GCNGC 4 cut(s) 85, 88, 263, 588
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 3 cut(s) 134, 359, 666
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 3 cut(s) 193, 242, 418
HindIII AAGCTT 1 cut(s) 548
HinfI GANTC 4 cut(s) 184, 200, 507, 641
HphI GGTGA 1 cut(s) 283
Hpy188I TCNGA 3 cut(s) 65, 98, 648
Hpy188III TCNNGA 5 cut(s) 275, 337, 371, 458, 635
HpyAV CCTTC 1 cut(s) 563
HpyCH4III ACNGT 2 cut(s) 286, 503
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 80, 244, 587
HpyF10VI GCNNNNNNNGC 6 cut(s) 356, 410, 562, 606, 615, 624
HpyF3I CTNAG 2 cut(s) 53, 645
HpySE526I ACGT 1 cut(s) 49
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 3 cut(s) 193, 242, 418
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 2 cut(s) 38, 169
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 1 cut(s) 160
Lsp1109I GCAGC 3 cut(s) 71, 274, 599
LweI GCATC 5 cut(s) 91, 337, 609, 618, 627
MaeI CTAG 1 cut(s) 566
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 2 cut(s) 310, 450
MalI GATC 2 cut(s) 40, 171
MboI GATC 2 cut(s) 38, 169
MboII GAAGA 3 cut(s) 359, 524, 665
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 6 cut(s) 19, 73, 231, 315, 478, 630
MluI ACGCGT 1 cut(s) 30
MlyI GAGTC 2 cut(s) 178, 650
MmeI TCCRAC 2 cut(s) 76, 276
MnlI CCTC 6 cut(s) 6, 370, 519, 521, 553, 688
MslI CAYNNNNRTG 1 cut(s) 150
MspR9I CCNGG 2 cut(s) 195, 220
MvaI CCWGG 2 cut(s) 195, 220
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 6 cut(s) 356, 410, 562, 606, 615, 624
NdeII GATC 2 cut(s) 38, 169
NlaIII CATG 3 cut(s) 193, 242, 418
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 310
NspV TTCGAA 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 648
PfeI GAWTC 2 cut(s) 200, 507
PkrI GCNGC 4 cut(s) 86, 89, 264, 589
PleI GAGTC 2 cut(s) 178, 649
PpsI GAGTC 2 cut(s) 178, 649
Psp6I CCWGG 2 cut(s) 193, 218
PspGI CCWGG 2 cut(s) 193, 218
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 2 cut(s) 133, 357
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 648
SatI GCNGC 4 cut(s) 85, 88, 263, 588
Sau3AI GATC 2 cut(s) 38, 169
Sau96I GGNCC 2 cut(s) 133, 357
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 2 cut(s) 178, 650
ScrFI CCNGG 2 cut(s) 195, 220
SduI GDGCHC 1 cut(s) 406
SfaNI GCATC 5 cut(s) 91, 337, 609, 618, 627
SfcI CTRYAG 1 cut(s) 387
SfuI TTCGAA 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 2 cut(s) 335, 523
SmoI CTYRAG 2 cut(s) 335, 523
Sse9I AATT 6 cut(s) 19, 73, 231, 315, 478, 630
SsiI CCGC 5 cut(s) 87, 108, 355, 425, 554
SspMI CTAG 1 cut(s) 566
StyD4I CCNGG 2 cut(s) 193, 218
TaaI ACNGT 2 cut(s) 286, 503
TaiI ACGT 1 cut(s) 52
TaqI TCGA 3 cut(s) 70, 459, 621
TasI AATT 6 cut(s) 19, 73, 231, 315, 478, 630
TatI WGTACW 1 cut(s) 174
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 2 cut(s) 200, 507
TscAI CASTG 3 cut(s) 210, 251, 709
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 3 cut(s) 84, 262, 587
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 2 cut(s) 472, 503
TspGWI ACGGA 1 cut(s) 572
TspRI CASTG 3 cut(s) 210, 251, 709
XspI CTAG 1 cut(s) 566
ZraI GACGTC 1 cut(s) 50
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.