Rh1AG108300

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0015731
Physical Location & Seq
Reverse (-)
18736668 .. 18739157
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG108300.1

Sequence Viewer

Length: 720 bp
ATGTTGAGGCGTAATTGCTTGAACGCGTTGGGATCCGTGAGACGTCTCAGCCATCTCCGATTTCGAAATTATGCAAGCTGCGGCTGTGTCGGAGATGCCCCCGCAAAATTTTGGTGTTCGGTTGTGGCCCCGAAAGACCATTTTTATGTGATGGAGCGTATTGATCAGTACTGTGCGACTCGCATGCCTGGAGAATCAGAGTTCCTGTTTCCCTGGATCGATACAATTGCTCATGTGCAGTGTTCCAACGAGAAGCAGCTTATAGTTCCTGACCACGCAGTTTTCACCAACGACCTTTGCCCAGTCACAATTAGTGGTCTGGTTTCTCTCAAGATTGAGGATGCTACGCGGGCCTCGTATCTTCCTGAAAATCCTATGGCTAAAGCTATTAGGTTTACCCAGACTGCCATGCGTTCTGCGGTTGGGAAAGTGGCTTATGATAAGTTACATCTCGAAACACGATACATCAACAATTTCATAATGAACGAACTCTCCTGTAGATTCTACATACTGGGCTTGAGGTGTCTTCAGTTTGATATAAAGCTTCCGCAGGAGGTGCTAGAAGGAATGGATATCCGTGCAGCAGTCAAACGCATCAAACGCATCAAAGGCATCGATGGCGTAATTCTTGATGAGTCTCAGAAAGAAGAGCTACATGGCCTTTACCAAGCCTTGTCAAAGAATGTTGAGGAAACCAGTGGGACACTTGCTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

239

Amino Acids

27.04

Weight (kDa)

8.34

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 46
AccII CGCG 2 cut(s) 26, 349
AciI CCGC 5 cut(s) 81, 102, 349, 419, 548
AclWI GGATC 3 cut(s) 27, 40, 224
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 512
AcyI GRCGYC 1 cut(s) 43
AfaI GTAC 1 cut(s) 170
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 1 cut(s) 22
AjnI CCWGG 2 cut(s) 187, 212
AloI GAACNNNNNNTCC 2 cut(s) 476, 508
AluBI AGCT 5 cut(s) 78, 259, 386, 544, 652
AluI AGCT 5 cut(s) 78, 259, 386, 544, 652
Alw26I GTCTC 3 cut(s) 34, 50, 642
AlwI GGATC 3 cut(s) 27, 40, 224
AoxI GGCC 3 cut(s) 126, 351, 658
ApeKI GCWGC 5 cut(s) 78, 256, 581, 710, 713
ApoI RAATTY 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 127, 351
AsuHPI GGTGA 1 cut(s) 277
AsuII TTCGAA 1 cut(s) 64
BamHI GGATCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 518
BbvI GCAGC 5 cut(s) 65, 268, 593, 697, 700
BccI CCATC 3 cut(s) 60, 145, 611
BcgI CGANNNNNNTGC 4 cut(s) 166, 200, 209, 243
BciT130I CCWGG 2 cut(s) 189, 214
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 3 cut(s) 34, 50, 642
BfaI CTAG 1 cut(s) 560
BfmI CTRYAG 1 cut(s) 496
BisI GCNGC 6 cut(s) 79, 82, 257, 582, 711, 714
BlsI GCNGC 6 cut(s) 80, 83, 258, 583, 712, 715
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 2 cut(s) 189, 214
BmgT120I GGNCC 2 cut(s) 127, 351
BmiI GGNNCC 2 cut(s) 34, 129
BmrFI CCNGG 2 cut(s) 189, 214
BmrI ACTGGG 2 cut(s) 296, 521
BmsI GCATC 5 cut(s) 85, 331, 603, 612, 621
BmuI ACTGGG 2 cut(s) 296, 521
BpiI GAAGAC 1 cut(s) 518
BpmI CTGGAG 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 64
BpuEI CTTGAG 2 cut(s) 314, 538
Bsa29I ATCGAT 2 cut(s) 219, 615
BsaHI GRCGYC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 212
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bse1I ACTGG 3 cut(s) 302, 516, 696
BseBI CCWGG 2 cut(s) 189, 214
BseCI ATCGAT 2 cut(s) 219, 615
BseDI CCNNGG 1 cut(s) 212
BseGI GGATG 1 cut(s) 346
BseMII CTCAG 2 cut(s) 61, 653
BseNI ACTGG 3 cut(s) 302, 516, 696
BseXI GCAGC 5 cut(s) 65, 268, 593, 697, 700
BsgI GTGCAG 2 cut(s) 257, 600
Bsh1236I CGCG 2 cut(s) 26, 349
BshFI GGCC 3 cut(s) 128, 353, 660
BshVI ATCGAT 2 cut(s) 219, 615
BslFI GGGAC 1 cut(s) 715
BsmAI GTCTC 3 cut(s) 34, 50, 642
BsmBI CGTCTC 2 cut(s) 34, 50
BsmFI GGGAC 1 cut(s) 715
BsnI GGCC 3 cut(s) 128, 353, 660
Bsp119I TTCGAA 1 cut(s) 64
Bsp143I GATC 3 cut(s) 32, 163, 216
BspACI CCGC 5 cut(s) 81, 102, 349, 419, 548
BspANI GGCC 3 cut(s) 128, 353, 660
BspCNI CTCAG 2 cut(s) 60, 652
BspDI ATCGAT 2 cut(s) 219, 615
BspFNI CGCG 2 cut(s) 26, 349
BspLI GGNNCC 2 cut(s) 34, 129
BspPI GGATC 3 cut(s) 27, 40, 224
BspQI GCTCTTC 1 cut(s) 642
BspT104I TTCGAA 1 cut(s) 64
BsrI ACTGG 3 cut(s) 302, 516, 696
BssECI CCNNGG 1 cut(s) 212
BssMI GATC 3 cut(s) 32, 163, 216
BssNI GRCGYC 1 cut(s) 43
Bst2UI CCWGG 2 cut(s) 189, 214
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 642
BstACI GRCGYC 1 cut(s) 43
BstAPI GCANNNNNTGC 1 cut(s) 556
BstBI TTCGAA 1 cut(s) 64
BstC8I GCNNGC 3 cut(s) 76, 185, 351
BstDEI CTNAG 2 cut(s) 47, 639
BstF5I GGATG 1 cut(s) 346
BstFNI CGCG 2 cut(s) 26, 349
BstKTI GATC 3 cut(s) 35, 166, 219
BstMAI GTCTC 3 cut(s) 34, 50, 642
BstMBI GATC 3 cut(s) 32, 163, 216
BstMWI GCNNNNNNNGC 5 cut(s) 350, 556, 600, 609, 618
BstNI CCWGG 2 cut(s) 189, 214
BstNSI RCATGY 1 cut(s) 187
BstSCI CCNGG 2 cut(s) 187, 212
BstSFI CTRYAG 1 cut(s) 496
BstUI CGCG 2 cut(s) 26, 349
BstV1I GCAGC 5 cut(s) 65, 268, 593, 697, 700
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
Bsu15I ATCGAT 2 cut(s) 219, 615
BsuRI GGCC 3 cut(s) 128, 353, 660
BsuTUI ATCGAT 2 cut(s) 219, 615
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 2 cut(s) 245, 703
Cac8I GCNNGC 3 cut(s) 76, 185, 351
Cfr13I GGNCC 2 cut(s) 127, 351
ClaI ATCGAT 2 cut(s) 219, 615
Csp6I GTAC 1 cut(s) 169
CviAII CATG 4 cut(s) 184, 233, 409, 656
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 47, 639
DpnI GATC 3 cut(s) 34, 165, 218
DpnII GATC 3 cut(s) 32, 163, 216
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
Eco32I GATATC 1 cut(s) 574
Eco57I CTGAAG 1 cut(s) 512
EcoRII CCWGG 2 cut(s) 187, 212
EcoRV GATATC 1 cut(s) 574
Esp3I CGTCTC 2 cut(s) 34, 50
FaeI CATG 4 cut(s) 187, 236, 412, 659
FaqI GGGAC 1 cut(s) 715
FatI CATG 4 cut(s) 183, 232, 408, 655
FauI CCCGC 2 cut(s) 109, 342
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 6 cut(s) 79, 82, 257, 582, 711, 714
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 6 cut(s) 79, 82, 257, 582, 711, 714
FspBI CTAG 1 cut(s) 560
GluI GCNGC 6 cut(s) 79, 82, 257, 582, 711, 714
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 3 cut(s) 128, 353, 660
Hin1I GRCGYC 1 cut(s) 43
Hin1II CATG 4 cut(s) 187, 236, 412, 659
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 4 cut(s) 178, 194, 501, 635
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 4 cut(s) 59, 92, 199, 642
Hpy188III TCNNGA 5 cut(s) 269, 331, 365, 452, 629
Hpy8I GTNNAC 1 cut(s) 396
HpyAV CCTTC 1 cut(s) 557
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 3 cut(s) 74, 238, 581
HpyF10VI GCNNNNNNNGC 5 cut(s) 350, 556, 600, 609, 618
HpyF3I CTNAG 2 cut(s) 47, 639
HpySE526I ACGT 1 cut(s) 43
Hsp92I GRCGYC 1 cut(s) 43
Hsp92II CATG 4 cut(s) 187, 236, 412, 659
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 3 cut(s) 32, 163, 216
LguI GCTCTTC 1 cut(s) 642
LmnI GCTCC 1 cut(s) 154
Lsp1109I GCAGC 5 cut(s) 65, 268, 593, 697, 700
LweI GCATC 5 cut(s) 85, 331, 603, 612, 621
MaeI CTAG 1 cut(s) 560
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 2 cut(s) 304, 444
MalI GATC 3 cut(s) 34, 165, 218
MboI GATC 3 cut(s) 32, 163, 216
MboII GAAGA 3 cut(s) 353, 518, 659
MfeI CAATTG 1 cut(s) 225
MflI RGATCY 1 cut(s) 32
MluCI AATT 7 cut(s) 13, 67, 107, 225, 309, 472, 624
MluI ACGCGT 1 cut(s) 24
MlyI GAGTC 2 cut(s) 172, 644
MmeI TCCRAC 2 cut(s) 70, 270
MnlI CCTC 5 cut(s) 331, 364, 513, 547, 682
MslI CAYNNNNRTG 1 cut(s) 144
MspR9I CCNGG 2 cut(s) 189, 214
MunI CAATTG 1 cut(s) 225
MvaI CCWGG 2 cut(s) 189, 214
MvnI CGCG 2 cut(s) 26, 349
MwoI GCNNNNNNNGC 5 cut(s) 350, 556, 600, 609, 618
NdeII GATC 3 cut(s) 32, 163, 216
NlaIII CATG 4 cut(s) 187, 236, 412, 659
NlaIV GGNNCC 2 cut(s) 34, 129
NmuCI GTSAC 1 cut(s) 304
NspI RCATGY 1 cut(s) 187
NspV TTCGAA 1 cut(s) 64
PaeI GCATGC 1 cut(s) 187
PciSI GCTCTTC 1 cut(s) 642
PcsI WCGNNNNNNNCGW 1 cut(s) 353
PfeI GAWTC 2 cut(s) 194, 501
PkrI GCNGC 6 cut(s) 80, 83, 258, 583, 712, 715
PleI GAGTC 2 cut(s) 172, 643
PpsI GAGTC 2 cut(s) 172, 643
Psp6I CCWGG 2 cut(s) 187, 212
PspGI CCWGG 2 cut(s) 187, 212
PspN4I GGNNCC 2 cut(s) 34, 129
PspPI GGNCC 2 cut(s) 127, 351
PsuI RGATCY 1 cut(s) 32
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 144
SapI GCTCTTC 1 cut(s) 642
SatI GCNGC 6 cut(s) 79, 82, 257, 582, 711, 714
Sau3AI GATC 3 cut(s) 32, 163, 216
Sau96I GGNCC 2 cut(s) 127, 351
ScaI AGTACT 1 cut(s) 170
SchI GAGTC 2 cut(s) 172, 644
ScrFI CCNGG 2 cut(s) 189, 214
SfaNI GCATC 5 cut(s) 85, 331, 603, 612, 621
SfcI CTRYAG 1 cut(s) 496
SfuI TTCGAA 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 2 cut(s) 329, 517
SmoI CTYRAG 2 cut(s) 329, 517
SphI GCATGC 1 cut(s) 187
Sse9I AATT 7 cut(s) 13, 67, 107, 225, 309, 472, 624
SsiI CCGC 5 cut(s) 81, 102, 349, 419, 548
SspMI CTAG 1 cut(s) 560
StyD4I CCNGG 2 cut(s) 187, 212
TaaI ACNGT 1 cut(s) 173
TaiI ACGT 1 cut(s) 46
TaqI TCGA 4 cut(s) 64, 219, 453, 615
TasI AATT 7 cut(s) 13, 67, 107, 225, 309, 472, 624
TatI WGTACW 1 cut(s) 168
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 2 cut(s) 194, 501
TscAI CASTG 2 cut(s) 245, 703
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 5 cut(s) 78, 256, 581, 710, 713
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 2 cut(s) 466, 497
TspGWI ACGGA 2 cut(s) 25, 566
TspRI CASTG 2 cut(s) 245, 703
XapI RAATTY 1 cut(s) 107
XceI RCATGY 1 cut(s) 187
XspI CTAG 1 cut(s) 560
ZraI GACGTC 1 cut(s) 44
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.